NO11G02820, NO11G02820 (gene) Nannochloropsis oceanica

Overview
NameNO11G02820
Unique NameNO11G02820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1120
Alignment locationchr11:892105..893224 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme/RWD
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:892105..893224 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR014806Ufc1
Homology
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: EWM24956.1 (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 4.000e-78
Identity = 134/178 (75.28%), Postives = 153/178 (85.96%), Query Frame = 0 
Query:   80 PHGPPAPPAAPSFDR--QLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPSGTTVK 256
            P   P PP   S D    +++EIP+L TRAGPRD + W++RVKEEMQA+IALVRINKEKDNDWF INP NK CTRWEGKCWTYHQGV+FEF +HF+VP SYPATCPDL++P LDGKTAKIYRGGRICLD+HFQPLWARNVPKFG+AHALALGLGPWLSLE+PSLV A +LP +GTT +
Sbjct:   15 PASEPMPPVWASTDHAPHVLEEIPMLHTRAGPRDGNQWISRVKEEMQAVIALVRINKEKDNDWFQINPVNKLCTRWEGKCWTYHQGVRFEFTIHFDVPASYPATCPDLIIPHLDGKTAKIYRGGRICLDLHFQPLWARNVPKFGIAHALALGLGPWLSLEIPSLVSAGLLPVTGTTAR 192
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: XP_011398975.1 (Ubiquitin-fold modifier-conjugating enzyme 1 [Auxenochlorella protothecoides] >KFM26079.1 Ubiquitin-fold modifier-conjugating enzyme 1 [Auxenochlorella protothecoides])

HSP 1 Score: 227.6 bits (579), Expect = 4.300e-56
Identity = 97/154 (62.99%), Postives = 122/154 (79.22%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQIL 248
            R  VQ+IPLL  +AGPRD+DAW AR+KEE+QALI  + INK  D DWFTI PTNK  T W+GKCW  H+ VK+EF+  F++P +YP T P++ LPELDGKTAK+YRGG+ICL IHF+PLWA+N P FG+AHAL LGL PWL+ EVP LV++ ++
Sbjct:   10 RATVQKIPLLTVKAGPRDKDAWQARLKEEIQALIKYIEINKRGDLDWFTIKPTNKEGTHWQGKCWYIHELVKYEFNFQFDIPATYPTTAPEIELPELDGKTAKMYRGGKICLTIHFKPLWAKNSPHFGVAHALCLGLAPWLAAEVPYLVESGVV 163
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: XP_009520752.1 (hypothetical protein PHYSODRAFT_285084 [Phytophthora sojae] >EGZ25464.1 hypothetical protein PHYSODRAFT_285084 [Phytophthora sojae])

HSP 1 Score: 225.7 bits (574), Expect = 1.600e-55
Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPP 250
            ++ VQ+IPLL TRAGPRD + W  R+KEE  ALI  V++NKE DNDWFTI  +NK  TRW GKCW++H G+++EFDL FE+P +YP   P+L +PEL+GKT+K+YRGG+ICL IHF PLW +NVP+FG+AHALALGL PWL+ EVP LV+  ++ P
Sbjct:   10 KRTVQKIPLLTTRAGPRDGEQWTKRLKEEYLALIQYVKMNKEADNDWFTIE-SNKAGTRWTGKCWSFHNGLRYEFDLEFEIPATYPVANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVITP 164
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: XP_008615011.1 (hypothetical protein SDRG_10780, partial [Saprolegnia diclina VS20] >EQC31612.1 hypothetical protein SDRG_10780, partial [Saprolegnia diclina VS20])

HSP 1 Score: 225.7 bits (574), Expect = 1.600e-55
Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPP 250
            ++ VQ++PLL TRAGPRD DAW+AR+KEE  ALI  V++NK  DNDWFTI  +N   T W G CW++H G+++EF++ FE+P +YP T P++ LPELDGKTAK+YRGG+ICL +HF+PLW RNVP+FG+AHALALGL PWL+ EVP L++  ++ P
Sbjct:   10 KRTVQKLPLLTTRAGPRDGDAWIARLKEEYTALIQYVQMNKAADNDWFTI-ASNANGTHWTGTCWSFHNGLRYEFEMEFEIPATYPVTNPEICLPELDGKTAKMYRGGKICLTVHFEPLWQRNVPRFGIAHALALGLAPWLAAEVPDLIERGMISP 164
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: POM67834.1 (Ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 225.7 bits (574), Expect = 1.600e-55
Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPP 250
            ++ VQ+IPLL TRAGPRD + W  R+KEE  ALI  V++NKE DNDWFTI  +NK  TRW GKCW++H G+++EFDL FE+P +YP   P+L +PEL+GKT+K+YRGG+ICL IHF PLW +NVP+FG+AHALALGL PWL+ EVP LV+  ++ P
Sbjct:   10 KRTVQKIPLLTTRAGPRDGEDWTKRLKEEYLALIQYVKMNKEADNDWFTIE-SNKAGTRWSGKCWSFHNGLRYEFDLEFEIPATYPVANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVITP 164
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: XP_024585937.1 (ubiquitin-fold modifier-conjugating enzyme 1 [Plasmopara halstedii] >CEG49568.1 ubiquitin-fold modifier-conjugating enzyme 1 [Plasmopara halstedii])

HSP 1 Score: 224.9 bits (572), Expect = 2.800e-55
Identity = 96/154 (62.34%), Postives = 125/154 (81.17%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQIL 248
            ++ VQ+IPLL TRAGPRD +AW  R+KEE  ALI  V++NKE DNDWF I  +NK+ TRW GKCW++H G+++EFDL FE+P +YPA  P+L +PEL+GKT+K+YRGG+ICL IHF PLW +NVP+FG+AHALALGL PWL+ EVP LV+  ++
Sbjct:   10 KRAVQKIPLLTTRAGPRDGEAWTKRLKEEYLALIQYVKMNKEADNDWFIIE-SNKSGTRWTGKCWSFHNGLRYEFDLEFEIPATYPAANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVI 162
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: ETI31882.1 (ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica P1569] >ETK72241.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica] >ETL25694.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica] >ETL78903.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica] >ETM32176.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica] >ETO60600.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica P1976] >ETP01707.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica CJ01A1] >ETP29867.1 ubiquitin-fold modifier-conjugating enzyme 1 [Phytophthora parasitica P10297])

HSP 1 Score: 224.6 bits (571), Expect = 3.600e-55
Identity = 95/156 (60.90%), Postives = 126/156 (80.77%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPP 250
            ++ VQ+IPLL TRAGPRD ++W  R+KEE  ALI  V++NKE DNDWFTI  +NK+ TRW GKCW+++ G+++EFDL FE+P +YP   P+L +PEL+GKT+K+YRGG+ICL IHF PLW +NVP+FG+AHALALGL PWL+ EVP LV+  ++ P
Sbjct:   10 KRTVQKIPLLTTRAGPRDGESWTKRLKEEYLALIQYVKMNKEADNDWFTIE-SNKSGTRWTGKCWSFYNGLRYEFDLEFEIPATYPVANPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVITP 164
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: XP_024398035.1 (ubiquitin-fold modifier-conjugating enzyme 1-like [Physcomitrella patens] >PNR37254.1 hypothetical protein PHYPA_020362 [Physcomitrella patens])

HSP 1 Score: 223.8 bits (569), Expect = 6.200e-55
Identity = 96/151 (63.58%), Postives = 121/151 (80.13%), Query Frame = 0 
Query:   97 VQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQIL 248
            VQ+IPLL TRAGPRD + W  R KEE  ALI  + +NKE+DNDWF I+P N+  T+W+GKCW  H  +K+EFDL FE+PV+YP T P+L LPELDGKTAK+YRGG+ICL IHF+PLW++N P+FG+AHAL LGLGPWL+ E+P LVD  ++
Sbjct:   12 VQKIPLLSTRAGPRDGEKWTQRRKEEFMALIKYMEMNKERDNDWFRISP-NQDGTKWKGKCWYIHNLLKYEFDLQFEIPVTYPMTAPELELPELDGKTAKMYRGGKICLTIHFKPLWSKNCPRFGIAHALCLGLGPWLAAEIPHLVDTGVI 161
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: GAQ83932.1 (Ubiquitin-fold modifier-conjugating enzyme [Klebsormidium nitens])

HSP 1 Score: 223.8 bits (569), Expect = 6.200e-55
Identity = 95/162 (58.64%), Postives = 124/162 (76.54%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPSGTTVK 256
            + +VQ+IPLL  +AGPRD + W  R+KEE QALIA +++NK  DNDWF I+  N   T+W+GKCW  H  +K+EFDL F++P +YPAT P+L LPELDGKTAK+YRGG+ICL IHF+PLWA+NVP FG+AHAL LG+GPWL+ E+P LV+  ++     T K
Sbjct:    9 KAVVQKIPLLTVKAGPRDGEDWKKRLKEEYQALIAYMQMNKANDNDWFRISAANPEGTKWKGKCWYIHNLLKYEFDLQFDIPATYPATAPELELPELDGKTAKMYRGGKICLTIHFKPLWAKNVPHFGVAHALCLGMGPWLAAEIPHLVETGMIQHKDNTAK 170
[Close]
BLAST of NO11G02820 vs. NCBI_GenBank
Match: GAX98554.1 (ubiquitin-fold modifier-conjugating enzyme 1 [Pythium insidiosum])

HSP 1 Score: 223.8 bits (569), Expect = 6.200e-55
Identity = 95/156 (60.90%), Postives = 125/156 (80.13%), Query Frame = 0 
Query:   94 RQLVQEIPLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPP 250
            ++ VQ+IPLL TRAGPRD + W  R+KEE  ALI  V++NKE DNDWFTI  +NK  TRW GKCW+++ G+++EFDL FE+P +YP + P+L +PEL+GKT+K+YRGG+ICL IHF PLW +NVP+FG+AHALALGL PWL+ EVP LV+  ++ P
Sbjct:   10 KRTVQKIPLLTTRAGPRDGEEWTKRLKEEYLALIQYVKMNKEADNDWFTIE-SNKAGTRWTGKCWSFYNGLRYEFDLEFEIPATYPVSNPELCIPELEGKTSKMYRGGKICLTIHFAPLWQKNVPRFGVAHALALGLAPWLAAEVPDLVERGVITP 164
The following BLAST results are available for this feature:
BLAST of NO11G02820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24956.14.000e-7875.28Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
XP_011398975.14.300e-5662.99Ubiquitin-fold modifier-conjugating enzyme 1 [Auxe... [more]
XP_009520752.11.600e-5561.54hypothetical protein PHYSODRAFT_285084 [Phytophtho... [more]
XP_008615011.11.600e-5560.26hypothetical protein SDRG_10780, partial [Saproleg... [more]
POM67834.11.600e-5561.54Ubiquitin-fold modifier-conjugating enzyme 1 [Phyt... [more]
XP_024585937.12.800e-5562.34ubiquitin-fold modifier-conjugating enzyme 1 [Plas... [more]
ETI31882.13.600e-5560.90ubiquitin-fold modifier-conjugating enzyme 1 [Phyt... [more]
XP_024398035.16.200e-5563.58ubiquitin-fold modifier-conjugating enzyme 1-like ... [more]
GAQ83932.16.200e-5558.64Ubiquitin-fold modifier-conjugating enzyme [Klebso... [more]
GAX98554.16.200e-5560.90ubiquitin-fold modifier-conjugating enzyme 1 [Pyth... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002004NSK002004Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02820.1NO11G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591662gene_5183Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100148g4gene5531Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02820.1NO11G02820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02820 ID=NO11G02820|Name=NO11G02820|organism=Nannochloropsis oceanica|type=gene|length=1120bp
ATGGCCGGTTATGGTGACGTGGGAGTGTTGCGGGTGGATGGCCCGGGAAC
CAGACAGAGGGACACCCAACGCCAGCCAAGCGATACCACGGTGGTCTTAG
AATGCCTGTGCTATCAGTGCAGTGCGCAGTGTGGGGAGGATTGTGgtagg
gtatggttggtcgaggctttaggcagaaggagaagtgattagatggggag
gagggaggctaaggcattgttgcctggcctcacatccacgcccaggcccc
agtcaccccctgtcaaggacacgataataaagcgcacagaatcgaggaga
tctctttagccttttgcttgctggatataaatcgtagggagaaagaagcg
aaattgatcggttggtatagcaatagctttcctcgcgccatcttgcccac
acgcctttcttgtgctctttgttgaccaaaaacactcctgcagggacaca
aaacgcaatcatccagccccgccaccctcttatcacataccctcaagACA
GGTCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCATCA
GAATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGGCCC
ACCGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAGAAA
TCCCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGGCTG
GCGAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGATAAA
CAAGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAACCT
GCACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAATTT
GAGTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTGCCC
CGACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACCGCG
GGGGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGGAAT
GTGCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCCGTG
GTTGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCACCGT
CGGGGACGACGGTCAAGTAG
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protein sequence of NO11G02820.1

>NO11G02820.1-protein ID=NO11G02820.1-protein|Name=NO11G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAGYGDVGVLRVDGPGTRQRDTQRQPSDTTVVLECLCYQCSAQCGEDCDR
SFAGAMDAAPIPPSSSELSSKPPAQSSITPHGPPAPPAAPSFDRQLVQEI
PLLRTRAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTC
TRWEGKCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRG
GRICLDIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPS
GTTVK*
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Synonyms
Publications