NO11G02570, NO11G02570 (gene) Nannochloropsis oceanica

Overview
NameNO11G02570
Unique NameNO11G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length573
Alignment locationchr11:808560..809132 -

Link to JBrowse

Properties
Property NameValue
Description20S proteasome beta subunit D1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:808560..809132 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR023333Proteasome_suB-type
IPR035206Proteasome_beta2
IPR001353Proteasome_sua/b
Homology
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_005853458.1 (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526] >EKU22901.1 signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 357.5 bits (916), Expect = 2.700e-95
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIA LDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGA+LYF+DYLGSMQK+NFGAQGYA+NFTLSIFDREY+EG+TL EAE +LEKAKKELAVRFLISQPKWIMKVVDKDGVR L
Sbjct:  173 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 362          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: EWM24937.1 (proteasome chain protein [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 2.700e-95
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIA LDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGA+LYF+DYLGSMQK+NFGAQGYA+NFTLSIFDREY+EG+TL EAE +LEKAKKELAVRFLISQPKWIMKVVDKDGVR L
Sbjct:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_002178756.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49454.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 225.7 bits (574), Expect = 1.200e-55
Identity = 108/189 (57.14%), Postives = 146/189 (77.25%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRM 190
            MDT+ G++ +G V++AAD S ARSIL+++T+ DK+ +L SH  +  +GPN D  N  E+V KN+ LYE +ND+KL THA ANF R  LATALRKGP+Q N LLGGFD K GASLY++DY+ ++QK+N+G+QGYA+NF LSI D+EY++ L  A+A +I+E+   EL  RFLISQ  +I+KVVDKDGVR+
Sbjct:    1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVGASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVRL 189          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: CBN79826.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 224.6 bits (571), Expect = 2.700e-55
Identity = 113/194 (58.25%), Postives = 148/194 (76.29%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----KDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            MDTLLGI G+GFV++AADA  ARSIL++K + DKIA L  +K LA AGP +DC + TEY+ KNMALYE NND+KL T AAA FIR  LA ALRKGP+QT LL+GG D+    KD ASL+++DYLG++QK+ +GA GY A FTLS+ DREY +GL+L EA  I++   KEL  RFLI+Q  +++KVV  +G++++
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVV 194          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_009038264.1 (hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens] >EGB07027.1 hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens])

HSP 1 Score: 221.9 bits (564), Expect = 1.700e-54
Identity = 110/190 (57.89%), Postives = 139/190 (73.16%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            M+T +G+ G+G+ ++ AD +AARSI+ FK D+DKI +LD  KLL  +G  AD    TEYVQKN+ALY+ NN L L T A  NFIR  LATALRKGPYQTNLLLGGFD+  GASLY++DY+ S  K+NFG  GY +NF LSI DRE+ EGL  A   +I+ K   EL  RFLI  PK+++K+VDKDG+R+L
Sbjct:    1 METTIGLLGNGYAIVCADQNAARSIVCFKKDEDKIMKLDDFKLLGQSGVGADNVAFTEYVQKNVALYKINNGLSLSTKATNNFIRGDLATALRKGPYQTNLLLGGFDKGVGASLYYIDYMASSNKVNFGCHGYGSNFVLSILDREWTEGLDEAAGLDIINKCIAELQTRFLIHMPKFLIKIVDKDGIRVL 190          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_004341316.1 (proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff] >ELR19231.1 proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 212.2 bits (539), Expect = 1.400e-51
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 0
Query:    2 DTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            D+L+G+ G  +VLIAAD + ARS+L  K D DKI  LDSHKLL A GP  D  + TEYVQ+N+ LY+F N+L LGTHA ANF+R  LA ALR  PYQ NLLLGG DE +G +LYF+DYL SM KL + A GY A F LSI D+ YK+ LTL +  +I+EK   EL  RF+I+ P +++KVVDK+G R++
Sbjct:    3 DSLIGLVGADYVLIAADTTTARSVLKMKLDDDKIMALDSHKLLGAVGPVGDRVHFTEYVQRNLKLYKFRNNLTLGTHATANFVRGELADALRSSPYQVNLLLGGVDE-EGPALYFLDYLASMDKLEYAAHGYCAYFCLSILDKYYKKDLTLEQGIDIIEKCITELRARFIINSPDFVIKVVDKNGTRVV 190          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_008877218.1 (hypothetical protein H310_12064 [Aphanomyces invadans] >ETV94015.1 hypothetical protein H310_12064 [Aphanomyces invadans])

HSP 1 Score: 208.4 bits (529), Expect = 2.000e-50
Identity = 107/198 (54.04%), Postives = 135/198 (68.18%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----------KDGA-SLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGV 188
            M++L GI G  FV++ AD+  ARSILV+K D+DKI  LDSHK++A +GP AD     EY+QKN+ LY+  N + L  HAAANF+R  LA  LRK P Q NLLLG FD            DG  SLY+ DYLGS+ K+N+GAQGY A+F LSI DRE++E LTLAEA++IL+    EL  RFL+    WI K++DKDGV
Sbjct:    1 MESLFGIVGKDFVIVGADSKVARSILVYKDDEDKIQALDSHKVIAGSGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANFVRNELAQRLRKAPVQLNLLLGAFDAANPNVPTADGSDGVPSLYWADYLGSLSKVNYGAQGYGAHFCLSILDREWRENLTLAEAKQILKHCNNELNERFLVRSGTWIYKMIDKDGV 198          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_009844170.1 (hypothetical protein H257_17177 [Aphanomyces astaci] >ETV66395.1 hypothetical protein H257_17177 [Aphanomyces astaci])

HSP 1 Score: 204.9 bits (520), Expect = 2.200e-49
Identity = 106/198 (53.54%), Postives = 134/198 (67.68%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFD---EKDGA--------SLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGV 188
            M++L GI G  FV++ AD+  ARSILV+K D+DK+  LDSHKL+A AGP AD     EY+QKN+ LY+  N + L  HAAAN++R  LA  LRK P Q NLLLG FD     D A        SLY+ DY G++ K+N+GAQGY A+F LSI DRE++E LTLAEA+ IL     EL+ RFL+   KWI KV+DKDG+
Sbjct:    1 MESLFGIVGKDFVILGADSKVARSILVYKDDEDKMQALDSHKLIAGAGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANYVRGELAQRLRKAPVQLNLLLGAFDVANPNDPATAATGGVPSLYWADYFGALNKVNYGAQGYGAHFCLSILDREWRENLTLAEAKVILTHCNNELSERFLVRSGKWIYKVIDKDGI 198          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_002314682.1 (proteasome subunit beta type-2-A [Populus trichocarpa] >XP_011030663.1 PREDICTED: proteasome subunit beta type-2-A [Populus euphratica] >XP_011013878.1 PREDICTED: proteasome subunit beta type-2-A [Populus euphratica] >ABK96308.1 unknown [Populus trichocarpa x Populus deltoides] >PNT15440.1 hypothetical protein POPTR_010G084800v3 [Populus trichocarpa])

HSP 1 Score: 202.2 bits (513), Expect = 1.400e-48
Identity = 94/188 (50.00%), Postives = 138/188 (73.40%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVR 189
            M+ + G+ GDGFV++A+D SA  SILV KT++DKI +LDSHKL+AA+G + D    TEY+QKN+ALY+F N + L T AAANF R  LATALRK PY  N+LL G+D++ G SLY++DY+ ++ K++ GA GY + F LS+ DR Y  G+++ EA E+++K   E+  R +++ P +++K+VD+DG R
Sbjct:    1 MECVFGLVGDGFVIVASDTSAVNSILVHKTNEDKIMKLDSHKLVAASGESGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYMVNILLAGYDKETGPSLYYIDYIATLHKVDRGAFGYGSYFCLSMMDRHYHSGMSVEEAVELVDKCITEIQSRLVVAPPNFVIKIVDRDGAR 188          
BLAST of NO11G02570 vs. NCBI_GenBank
Match: XP_007223462.1 (proteasome subunit beta type-2-A [Prunus persica] >XP_008224283.1 PREDICTED: proteasome subunit beta type-2-A [Prunus mume] >ONI26323.1 hypothetical protein PRUPE_1G017400 [Prunus persica] >ONI26324.1 hypothetical protein PRUPE_1G017400 [Prunus persica])

HSP 1 Score: 201.1 bits (510), Expect = 3.200e-48
Identity = 95/188 (50.53%), Postives = 136/188 (72.34%), Query Frame = 0
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVR 189
            M+++ G+ GDGF ++AAD SA  SILV K+++DKI  LDSHKL+AA+G   D    TEY+QKN+ALY+F N + L T AAANF R  LATALRK PY  N+L+ GFD++ GASLY++DY+ S+ K+  GA GY + F LS+ DR Y  G+++ EA ++++K   E+  R +++ P +++K+VDKDG R
Sbjct:    1 MESIFGLVGDGFAVVAADTSAVHSILVHKSNEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYMVNILMAGFDKEAGASLYYIDYIASLHKVEKGAFGYGSYFALSLMDRHYHSGMSVEEAIDLVDKCIIEIRSRLVVAPPNFVIKIVDKDGAR 188          
The following BLAST results are available for this feature:
BLAST of NO11G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853458.12.700e-9594.21signal peptidase, endoplasmic reticulum-type [Nann... [more]
EWM24937.12.700e-9594.21proteasome chain protein [Nannochloropsis gaditana... [more]
XP_002178756.11.200e-5557.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN79826.12.700e-5558.25conserved unknown protein [Ectocarpus siliculosus][more]
XP_009038264.11.700e-5457.89hypothetical protein AURANDRAFT_60167 [Aureococcus... [more]
XP_004341316.11.400e-5156.61proteasome subunit beta type2, putative [Acanthamo... [more]
XP_008877218.12.000e-5054.04hypothetical protein H310_12064 [Aphanomyces invad... [more]
XP_009844170.12.200e-4953.54hypothetical protein H257_17177 [Aphanomyces astac... [more]
XP_002314682.11.400e-4850.00proteasome subunit beta type-2-A [Populus trichoca... [more]
XP_007223462.13.200e-4850.53proteasome subunit beta type-2-A [Prunus persica] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001979NSK001979Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02570.1NO11G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591565gene_5153Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100086g7gene5559Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02570.1NO11G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02570 ID=NO11G02570|Name=NO11G02570|organism=Nannochloropsis oceanica|type=gene|length=573bp
ATGGACACACTTCTGGGCATAAAAGGCGACGGATTCGTTCTCATTGCTGC
GGACGCCTCGGCGGCCCGTTCCATCCTTGTCTTCAAAACGGACCAAGACA
AAATAGCCCAGTTGGACAGCCATAAGCTCCTCGCCGCGGCGGGACCCAAC
GCTGACTGCAGCAATTTGACCGAGTACGTGCAGAAGAATATGGCATTGTA
TGAGTTTAACAACGATCTGAAGCTAGGCACCCATGCGGCGGCCAACTTTA
TCCGTCGCACTCTGGCCACGGCGTTGCGCAAGGGTCCGTACCAAACCAAT
TTGCTGCTGGGGGGGTTCGATGAGAAGGATGGGGCGTCTCTGTACTTTAT
GGATTACCTGGGCAGCATGCAGAAGCTTAACTTTGGCGCGCAGGGATACG
CAGCGAATTTTACGCTGTCGATCTTTGATAGGGAGTACAAGGAGGGGTTG
ACGCTTGCGGAGGCGGAGGAAATTTTGGAGAAGGCGAAGAAGGAGTTGGC
AGTACGATTTCTGATTTCTCAACCCAAGTGGATCATGAAAGTCGTGGATA
AGGATGGGGTGCGCATGCTTTAG
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protein sequence of NO11G02570.1

>NO11G02570.1-protein ID=NO11G02570.1-protein|Name=NO11G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPN
ADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTN
LLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGL
TLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML*
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Synonyms
Publications