NO11G02540, NO11G02540 (gene) Nannochloropsis oceanica

Overview
NameNO11G02540
Unique NameNO11G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2200
Alignment locationchr11:801810..804009 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:801810..804009 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02540 vs. NCBI_GenBank
Match: EWM24943.1 (hypothetical protein Naga_100086g2 [Nannochloropsis gaditana])

HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26
Identity = 98/314 (31.21%), Postives = 144/314 (45.86%), Query Frame = 0 
Query:   31 LIHIRLADGVDRSPEASHPSSSYLNPPGPXXXXXXXXXXXXTITRPPARPYGPRLLRGLAGDIFSVTEGGYHYKLKMFDSVSQRKTTENEPLLLGVWDRWEVVEREEEV--------VGEMGKRRGKALSLRMVYMDGATCMANTSVVRTVLVDFLCAA---SPIPRADE--SAASAAIITDGDA---VALSNDDDSTGTNLVDRVVKAREEGRVVQEGEDAAAVFVQEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVDFRLSDARESSVCLHHLTLHSPIPCAVLHKELASFA 329
            ++HIRLADGVDR    S        PP              T    PARP GPRLLR + G+ F++T+ G++Y +KMF +V++R+ +EN P++LGVWD+WE+V  +EE           ++G+  G ++S RM+Y  G  C  NTSV+++V VDFLC A   + +P  D   SA   A ++D D    V    ++    T+L  R   A++ G                                                              + ++FRL DA E+  C H LTL SP+PCAVL +++   A
Sbjct:   34 VVHIRLADGVDRRSLQSTAEEPPTIPP------VDTPSSTSTPLPAPARPSGPRLLREMDGESFALTKDGHNYNVKMFQTVTRRRPSENTPVVLGVWDKWEMVNGKEEAEDVNIACKEAQVGEGHGVSMSFRMLYRHGDPCPHNTSVLQSVTVDFLCLAPSFTTVPGLDSGASAGKPASVSDMDGSSHVTTWEEEADGQTSLGTRPGVAKDMG--------------------------------------------------------------QGLNFRLMDAVETPPCHHRLTLDSPVPCAVLARDMVDVA 279
The following BLAST results are available for this feature:
BLAST of NO11G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24943.11.300e-2631.21hypothetical protein Naga_100086g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001976NSK001976Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02540.1NO11G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100086g2gene5563Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02540.1NO11G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02540 ID=NO11G02540|Name=NO11G02540|organism=Nannochloropsis oceanica|type=gene|length=2200bp
GTTTGGTTGAGTTGAGAGTATCAGATTATCGTATATTGCTTTGACTTCAA
TATTCATTTTTACATGCACCCGCGAGGATGGCTTTGAAGGCGTGCGGGAG
CACGCCGACACTCTACATATAGATGATGGATGCACTTTTTCTAACCTCCT
GCCTTGCGAAGTCCTTTATGGCTGGGTCCCCTTGGTTCAGCAGTGGAACC
AAAAGGCAAAACAAAGACGGTACTCGGAATTGCCCTTCTGTCGCGTTATT
TCTTTAGGTCCGCCCTCAAGGTCCACGAAAGCCACCAGCGAGGTGTGCAA
GTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTCTAGGAGTGAAACGG
CAGAAAAAAGAACTATATATTGTATGTGATAGTATAGTATAATACCATGG
CCACTATCATCATCCTCCCCTCCCCTCATTTGCCTAATTCAACCCTGCTC
TGTCTGCCCTTTACCGATATAGAGAGACTCTCAGCTATATCACAACGGTA
CCCAACCACAGGCATATATCACCGCATTTTGCTAGCCCGGAGACCGTTGC
CCGCTTCTATCGCCCACAAATCGCTGCTGCTTGAACAAAATGGCCCACAC
AGAGCGCTCCTCCCTCGTCGTTTTCCACCTCTTATCCCTGCTACTTCTCA
GCACTCATGCCCTTGATACCGATGTGAACCTCATTCATATCCGCCTGGCC
GACGGGGTCGACCGTTCACCGGAAGCCTCCCACCCTTCTTCCTCCTATCT
TAATCCCCCCGGTCCGCCTCAGCACCCTTCCTCCACCTCTGCCACCAAGA
GCACCATTACACGCCCCCCGGCCCGGCCGTACGGCCCTCGACTCTTGCGT
GGGCTGGCCGGAGATATCTTTAGCGTGACGGAAGGAGGATATCATTACAA
ACTGAAAATGTTTGACAGCGTCTCACAAAGAAAGACGACGGAAAATGAAC
CCTTGTTGTTGGGGGTGTGGGATCGGTGGGAAGTTGTGGAGAGAGAGGAG
GAAGTGGTAGGGGAAATGGGGAAAAGGAGGGGAAAGGCTTTGTCGCTTCG
GATGGTATACATGGATGGGGCCACATGCATGGCGAACACGAGCGTCGTTC
GCACTGTATTGGTGGACTTCTTGTGTGCCGCTTCCCCTATTCCTCGTGCT
GATGAATCTGCTGCTTCTGCTGCTATCATTACCGATGGTGATGCTGTTGC
TCTTTCCAATGATGATGACAGCACTGGCACGAATCTCGTCGATCGAGTTG
TAAAGGCAAGGGAGGAGGGCAGAGTAGTCCAAGAGGGTGAAGACGCGGCT
GCAGTCTTCGTTCAGGAGGTGCAGCAGCAGCCGCAGCAGATATCAGCCGC
AACAGCAACAGCAACAGCAATTTTATCGAAGATGGAAGCAGAGGCAGCAA
GCTATATTTCTACACACACTTATTCTCCGTCTCCTCCCCCTCCTCCTCCA
CCTCAAGAAGTAGTCGATTTTAGGTTATCTGACGCCCGGGAATCCTCGGT
TTGTCTGCATCACCTCACTCTCCACTCTCCTATCCCTTGCGCGGTCCTTC
ACAAAGAGCTTGCTTCCTTTGCAACGCAAGACTTGATAAAAGGAGAGGAC
GATGCGGAGGAGGAGGCGAAGAGAGGAGGGGGAACAAAGAGACAAAGGAA
GAAGAAGAGCAAGGGGAAGAAGGTGGGGAGGAAAAGAGGGATGGTTCCCC
TGATAGAAGGAGTGACACGATGGGTGGAAGAGTTTTGGGGAAAGGCGGTG
AGAGCAACGGCTAATAGTTTAGCCAGCTCCAATGACATCACATCGTCTTC
CTCCTCCTCCGCCTCGTCTTCTGTCTGTACTTGCCCTTGTGCTGTTGACA
CAGGTGCCGCTGCTCCTGCTGCTCCTGCTTCTGTTGCTGTTTGCGGCGAG
GTAGGGGAGAAGGAAAAGGACCGAATCGAGGCTCTGATAAATGAGGTAGG
TGAGCTGCGTTCGCAGCTAGCGGATTTCTTAGAAGAGATGCGAGGAGGGA
GGGAGGGAGGGAGGGAGGAGTGGGATCGATGATGGTTGCACCGATGGATT
GCGAGGGAGATGTGCCATGCGATCTAGTGTAAAGTAGAAGATAAACAGGA
GAAGATGATGGGTGAGAGAAGGCGGGGGGGAGGTGGCGGTTGATTTTTCG
GGAAAGATTACAAAATAAAAAGGCTGCATGTACATGCACGCGGGGTAGGT
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protein sequence of NO11G02540.1

>NO11G02540.1-protein ID=NO11G02540.1-protein|Name=NO11G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MAHTERSSLVVFHLLSLLLLSTHALDTDVNLIHIRLADGVDRSPEASHPS
SSYLNPPGPPQHPSSTSATKSTITRPPARPYGPRLLRGLAGDIFSVTEGG
YHYKLKMFDSVSQRKTTENEPLLLGVWDRWEVVEREEEVVGEMGKRRGKA
LSLRMVYMDGATCMANTSVVRTVLVDFLCAASPIPRADESAASAAIITDG
DAVALSNDDDSTGTNLVDRVVKAREEGRVVQEGEDAAAVFVQEVQQQPQQ
ISAATATATAILSKMEAEAASYISTHTYSPSPPPPPPPQEVVDFRLSDAR
ESSVCLHHLTLHSPIPCAVLHKELASFATQDLIKGEDDAEEEAKRGGGTK
RQRKKKSKGKKVGRKRGMVPLIEGVTRWVEEFWGKAVRATANSLASSNDI
TSSSSSSASSSVCTCPCAVDTGAAAPAAPASVAVCGEVGEKEKDRIEALI
NEVGELRSQLADFLEEMRGGREGGREEWDR*
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Synonyms
Publications