NO11G02490, NO11G02490 (gene) Nannochloropsis oceanica

Overview
NameNO11G02490
Unique NameNO11G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2166
Alignment locationchr11:792114..794279 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:792114..794279 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO11G02490 vs. NCBI_GenBank
Match: EWM24915.1 (hypothetical protein Naga_100092g3 [Nannochloropsis gaditana])

HSP 1 Score: 154.5 bits (389), Expect = 5.100e-34
Identity = 151/365 (41.37%), Postives = 177/365 (48.49%), Query Frame = 0 
Query:    1 MSDVKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDRKAAELIVGAYSDVNLATKIAHDDTKALLHEARKKAV---------------------------------------------------------SAVTTPQHEAPVEAPKPVPAPAEQTGGRWRSRRVMVEQGL-APPLPGGSGSSSNGGKIEEFPALGGFPSLGGTAGTAAAGTVPTKAVAATGTWGRVGGE----------EEAAHVTVVSDVVEXXXXXXXXXXXXXXXXXXXXXXXCAPPAAPVVREAEAVAPAGPLAT------------AKATTKGDADVEALAEGVAVVDLKGKFGTKKKKKKAIDMDA 286
            MSDVKSLFRKKTKQA KAK EPVK T EEEEDDEWGV  KPTEQLY+G+RKA ELI GAY+DVNLA K+AHDDTKA+ H+ RKKAV                                                          ++++P   +P         P +++  RWRSRRV+ EQGL  PPL  GS SSS                                 V A G WG+V             E+   VT       XXXXXXXXXXXXXXXXXXX      P +    +E+  VAP    AT             +   +G+  V+ +AEGVA VDLK KFGTKKKKKK ID+DA
Sbjct:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCVYRGVQDVAFSKNLPLIDYHILLGIYCSLSSPLFSSPSPFLPVSLLPPDRSDRRWRSRRVLAEQGLIPPPLDSGSNSSS----XXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVAAGRWGQVADTSSSRTTGQKIEKEGGVTPAPAGTXXXXXXXXXXXXXXXXXXXXNAVLSTPSSQGKEKESTFVAPTVTGATESLNVQDSSVGVRQEKVEGNVAVDVIAEGVATVDLKSKFGTKKKKKKHIDIDA 361
[Close]
BLAST of NO11G02490 vs. NCBI_GenBank
Match: XP_005855251.1 (hypothetical protein NGA_0082000 [Nannochloropsis gaditana CCMP526] >EKU21108.1 hypothetical protein NGA_0082000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 96.3 bits (238), Expect = 1.700e-16
Identity = 55/88 (62.50%), Postives = 60/88 (68.18%), Query Frame = 0 
Query:    1 MSDVKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDRKAAELIVGAYSDVNLATKIAHDDTKALLHEARKKAVSA 89
            MSDVKSLFRKKTKQA KAK EPVK T EEEEDDEWGV  KPTEQLY+G+RKA EL+                   A+ H+ RKKAVSA
Sbjct:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVVPKPTEQLYLGNRKARELM-------------------AVFHDVRKKAVSA 69
[Close]
BLAST of NO11G02490 vs. NCBI_GenBank
Match: XP_005854300.1 (omega-6 fatty acid desaturase delta-12 [Nannochloropsis gaditana CCMP526] >EKU22061.1 omega-6 fatty acid desaturase delta-12 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 
Query:   26 TVEEEEDDEWGVTSKPTEQLYMGDRKAAELIVGAYSDVNLATKIAHDDTK 76
            T EEEEDDEWGV  KPTEQLY+G+RKA ELI GAY+DVNLA K+AHDDTK
Sbjct:  288 TAEEEEDDEWGVVPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTK 337
The following BLAST results are available for this feature:
BLAST of NO11G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24915.15.100e-3441.37hypothetical protein Naga_100092g3 [Nannochloropsi... [more]
XP_005855251.11.700e-1662.50hypothetical protein NGA_0082000 [Nannochloropsis ... [more]
XP_005854300.11.700e-1380.00omega-6 fatty acid desaturase delta-12 [Nannochlor... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001973NSK001973Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02490.1NO11G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|54852gene_5147Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100092g3gene5568Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02490.1NO11G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02490 ID=NO11G02490|Name=NO11G02490|organism=Nannochloropsis oceanica|type=gene|length=2166bp
ACCACAGAAAGCAAGAAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCC
CCTGTCTTGGCCCTACCCGAAGACAGGTGTACGGCTACGGCAGGAGCCAC
ACCCCTGCAATATTACCACATAATCAACATTTTTGGCGTCTCCGAGCAAG
CAATGTCCGACGTCAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGgta
cgtatgtaccctgtactagggggccgtggagtgccggggcggggagtcta
ctctgagagagcaaggccagcacatccccgtctttctccatgtatctggc
cgatgcgcttctcacgaccactctcaagccctttaccgccttcccatcct
ccctatgtatacagGTCAAGGCCAAGGCTGAGCCCGTTAAGCTgtaagta
catctccttctctccgcttgctcccctttctcgcctttctttttccaact
ttgtttgctcgcccttgttgcctctgtttcctcccatccatatagatctc
ttccactaacgcgcatatctactcttctcacagGACGGTCGAAGAGGAGG
AAGACGATGAGTGGGGGGTGACCTCCAAGCCCACAGAGCAGCTGTACATG
GGAGATCGCAAGGCCGCGGAATTAATgtacgtaaaggcagtgatttgttt
gacgtcatacaagtaaagacgggtataaagattgattaagtgcacaggtg
gtactcccgcaaatcgtcccagtcgtccatccattgaactgtctgtagtc
ttcctttctttcgtgtccatctttattatatgtctctcttcccgtctttt
ccgtaaccccttttggtaaggtaccattgtgacaggtcgctcattccctc
ctgctctcatggcgcatctaacctccgaccttgcctccctccctctattc
ctcgacagCGTCGGCGCCTACTCGGACGTCAATCTGGCCACCAAGATCGC
GCATGACGACACCAAgtaagtaactgacgggaagcaagggcgggaataaa
attgtcactgcatacccaagccgcttagcttttcccggtgttggggtttc
cttcctactccttccacctttctcccttcgcagtagccccgttgctcctc
ctcacacccttggccctctttctcccaaaccgctcaaatcatttcttgaa
ctcaatagGGCACTCCTCCACGAAGCCAGAAAAAAGGCCGTGTCTGCCGT
CACCACTCCTCAGCATGAGGCCCCCGTCGAAGCCCCCAAGCCCGTCCCCG
CACCCGCCGAGCAAACCGGgtatgtttgtttagtgttgagcttgttggtt
tccgtcccactcgccatttttttcctctaagcacgatctttctattgtta
tataaaggggtcatcataactcatcctcttctctcctcatctctcccgtc
ttctcctatatccctatctccctccctccctccacctttctcctcaaaca
tagGGGCCGCTGGCGCTCCCGACGTGTCATGGTTGAGCAAGGCCTCGCCC
CTCCTCTCCCTGGCGGCAGCGGCAGCAGCAGCAACGGAGGCAAGATTGAA
GAATTTCCTGCCCTCGGCGGCTTCCCTTCCCTCGGAGGCACTGCCGGTAC
CGCGGCTGCTGGCACGGTGCCTACCAAAGCTGTGGCAGCGACGGGCACAT
GGGGTCGCGTCGGAGGGGAGGAGGAGGCAGCACATGTCACAGTTGTATCA
GACGTCGTGGAGACGCAGGAGAAGAAGGAACCGACGCCCACAGCTGCAGC
TACCCCACCAGCGACGGAGAAGGAGGATAAATGCGCGCCCCCTGCTGCAC
CGGTAGTGAGAGAGGCGGAAGCTGTGGCACCAGCAGGGCCACTTGCAACA
GCGAAAGCGACAACAAAAGGGGACGCAGATGTTGAGGCGCTGGCGGAGGG
CGTGGCGGTGGTGGACCTGAAGGGTAAATTTGGCACCAAGAAAAAGAAGA
AGAAGGCGATTGATATGGATGCGTGAGGAGAAGAGGGGTATAAAGAAGGG
AAGGGGCGAGGGATGGATCTTTCCAATTGGCTGTCAAAAGAGCGGGGAAG
GGTGGGAAGAGGGGAACAATGTCGTTTTCAAAGTTAGAAGAAATACAAGG
CAGGCTAAGATGCTGGCCAAAAAGGAAAAAAGAGCGAAACGCCGCTTGGA
ACTCGTCATGAGTTTA
back to top

protein sequence of NO11G02490.1

>NO11G02490.1-protein ID=NO11G02490.1-protein|Name=NO11G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSDVKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDR
KAAELIVGAYSDVNLATKIAHDDTKALLHEARKKAVSAVTTPQHEAPVEA
PKPVPAPAEQTGGRWRSRRVMVEQGLAPPLPGGSGSSSNGGKIEEFPALG
GFPSLGGTAGTAAAGTVPTKAVAATGTWGRVGGEEEAAHVTVVSDVVETQ
EKKEPTPTAAATPPATEKEDKCAPPAAPVVREAEAVAPAGPLATAKATTK
GDADVEALAEGVAVVDLKGKFGTKKKKKKAIDMDA*
back to top
Synonyms
Publications