NO11G02450, NO11G02450 (gene) Nannochloropsis oceanica

Overview
NameNO11G02450
Unique NameNO11G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4946
Alignment locationchr11:777470..782415 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:777470..782415 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020467K_chnl_volt-dep_Kv1.4
Homology
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BLAST of NO11G02450 vs. NCBI_GenBank
Match: EWM24922.1 (hypothetical protein Naga_100092g8 [Nannochloropsis gaditana])

HSP 1 Score: 453.8 bits (1166), Expect = 1.700e-123
Identity = 447/1214 (36.82%), Postives = 535/1214 (44.07%), Query Frame = 0 
Query:    1 MEPPAMRPSVGGAPRRRASMAPGAS---VSSSLRGGLMPIAINGTSTSATTKSILKQSQPQRRRESLAVISRLAAHQKQQDHYDENHGPPAREEPRLPFHRSSRQQHRKPAPDPASGNEENVAHAFNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPQRLQQDASTMLIRLRQALARVQGESQRLSTFAQQPRLKTHGGAASAAAHPRPSAEVLDMCRRLVAATESAVRNLQVLFPMVMVRE-----VEGGRXXXXXXXXXXDEMEMESAQGKALMPAGLGVPSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXEEGEIREETYTPKSLAPLGSRRSMAGSPVTTAAVSA-TAAESEELRSLVEDVGLQLVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLWSPPSMSDLGLSHFTRRFIEAAKE----EGKEGEDGNDKTMRVHGRNDASSSIMSASXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPTISMPCADGMREFPSPVFRTGVKLRHP----PSEQHRHFSSSASRKGAYTHAXXXXXXXXXXXXXXRSPALFEPQSVNKQGVRRSLHAPYLAPLIPPF--PSSPLLESVDRGQQPDEHHTSFASSTATPAMHSPSLLHRHPTTAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPELTSPAKTPFRVLPSGGGXXXXXXXXXXXXXXXXXXSTARCIRLLQFPPVSAGGTVRGRMEGGIEGGRSSDGRRSMSRTPAGGAAAAVAGGEGVREGGEDVMVMGEEESFTANYPDLIRHSTSFVFSPNRLLGLGLDEDGREGGR--EXXPRYYLRSAEK--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVQTPVSNTRKSPRIARMALERE-----GGSVRHGPG-RGGLFASDVEAEAENG-GREGP-VCRPIPAVGSDEYAKTPSFIQMQVTREMLNGAIGAFNAYVRERTGGRNGEMDALPLDRVTEVIAQGDAGKTVLLSLIHLKRVGISVTAQGQKAYKIW 1172
            M+  + RP++GGAPRRRASMAP AS   + SS  G   P+      T+   KSILK SQ Q RR+SLAV SRL  HQ    H       P + EPRLPFHRSSR+QHR+P P P+S ++EN+  A                                                                 ATPQRLQQDASTM  RLRQALAR +GES+RL+  A Q   K  G   S   + RPSAEVLDMCRRLVAAT+ AV+ L +LFP     +          XXXXXX    D  ++ + +  +++    G   A  XXXXXXXXXXXXXXXX                    +  +LA      S AG+           A E   L+ LVE+VG QL +                                                                                    R L SPPSM+DLGLS FTRRFIE AKE    EGK  E    ++ R     DASS  +S S       R                                               TP I MP A G+REFPSPVFRTGVKLRHP    P  + R     AS   + T +              RSP LFEPQS+NKQG+RRSLHAP     +PP   PS P     D   +  +HH+  +SSTATPAM SPSLL RH + AG                                                            PELTSPAKTPFRVLPSG                    STARCIRLLQFPP+SAG   + ++EG   GG    G+R +SRTPAG  AAAV  G   RE  E  M+MGE+ESF+ NYPDL R S SFVFSPNR++GLGL+ +G   G   E  PRYYLRSAEK                                                                                     +  ++TRKSPRIAR  LERE       + + G G R  LFA+DVEAE E G  + GP  CRPIP V  +E+A+ PSFIQ+QVTREMLN AI  FN++++ +  G    + ALPLD+VTE+IAQGD  KT+LLSL HLKRVG+S+T QGQ+AYKIW
Sbjct:    1 MDHASFRPALGGAPRRRASMAPSASSLTLLSSASGNFTPV-----PTTTAIKSILKPSQVQPRRDSLAVPSRLTVHQNV--HVTAGAQAP-KAEPRLPFHRSSRKQHRRPEPQPSSTDQENLTSA-------------PLSKHAASMGVHAAKPHLSTGNVAVPTHASLKTPSHKKATAKLGGTAGKVSCATPQRLQQDASTMWTRLRQALARAEGESERLTKMAIQEPSKQGG---SQRGNARPSAEVLDMCRRLVAATDDAVKTLHLLFPGASFEDRREXXXXXXXXXXXXXLPQSDATDVGAGRHPSIVEEEEGEEEAXXXXXXXXXXXXXXXXXXPGHSGGA-------------SKGNLAAASETESGAGTSTAEGLTEQDDATERSALQRLVEEVGEQLKQ---------------EEEKEERGTGAIVSPDRGGRAGDGIEDETVRKEEAGEAAGEDDGMGKEKVRMVVEEGEASEPGARRPGGRDLESPPSMADLGLSQFTRRFIETAKEGTWGEGKGRESARKESSR---EADASSQELSPSSPTLPLERGAAAAATGPK-------------------------------------TPVIVMPTAQGVREFPSPVFRTGVKLRHPTGSTPGTRPRPNHLGASSHSSSTSS------------SCRSPNLFEPQSLNKQGLRRSLHAP---ASLPPSARPSHPPSTRHDDDTEL-QHHSFVSSSTATPAMQSPSLLQRHASLAG----------------------RQCLGQPLSLSSQASGPPRGPSVRPSTSSWAARSNDPTPELTSPAKTPFRVLPSG-----LDQGAGEDEERDGTPSTARCIRLLQFPPLSAGS--KDKVEGTGSGGMKR-GKR-LSRTPAG--AAAVEAGTRDREDREG-MMMGEDESFSYNYPDLTRQSASFVFSPNRMVGLGLEAEGGGAGAEGETGPRYYLRSAEKKARELAVVRAEEEEAARQAASVRALAAARRSPRLASLDKHGARVSDSAGQSANEGEGKQEIMTRAPSAKPFASSPAVPAASPMPASSTTHTRKSPRIARSTLEREVTAAYQATAKVGSGKRQSLFAADVEAEVEAGPDKAGPQPCRPIPEVPEEEFARAPSFIQIQVTREMLNDAIKVFNSHMKGKQHGGKSGVQALPLDQVTEIIAQGDLSKTILLSLAHLKRVGMSMTTQGQRAYKIW 1072
The following BLAST results are available for this feature:
BLAST of NO11G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24922.11.700e-12336.82hypothetical protein Naga_100092g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001966NSK001966Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02450.1NO11G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591520gene_5141Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100092g8gene5573Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02450.1NO11G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02450 ID=NO11G02450|Name=NO11G02450|organism=Nannochloropsis oceanica|type=gene|length=4946bp
ATGGAGCCACCTGCCATGCGCCCCAGCGTTGGTGGTGCGCCCCGGCGGAG
AGCGTCGATGGCACCGGGGGCCTCCGTGTCCTCTTCGTTGCGAGGTGGCC
TGATGCCCATCGCTATTAACGGCACCAGCACATCAGCCACGACCAAGAGC
ATTCTCAAGCAATCCCAGCCGCAACGACGCCGGGAGTCCTTGGCCGTCAT
TTCTCGGCTGGCGGCGCATCAAAAGCAACAGGACCACTACGATGAGAACC
ATGGCCCTCCTGCCCGGGAGGAGCCACGTCTCCCCTTCCACCGATCCTCC
CGCCAACAACACCGCAAGCCAGCCCCCGATCCAGCTTCCGGGAATGAGGA
AAACGTCGCCCATGCCTTTAACACCACAATTTTGAGCAGCAGCAGTAGCA
GCAGGACTGGCAGCAGCAGCAGCTTCCTTGCCAAGCCAGTTGCGTCGACC
ATCTCCGCCGCTGCCACCACCCTCTCTTGCGCTGCTTCTAACCCCACCAC
CCCAGCACGCAAGCCTAAGCCTCCAGCCAAGCTTAGTGGCACGGCCAGTA
AAATCTCGACTGCCACCCCTCAACGCCTTCAGCAAGACGCGAGCACAATG
TTGATCCGCTTGAGACAAGCCTTGGCGAGGGTTCAAGGAGAAAGTCAACG
CTTGTCGACCTTCGCGCAACAACCACGACTGAAGACACATGGTGGTGCTG
CTAGTGCTGCTGCTCATCCTCGTCCTTCTGCCGAGGTGCTCGATATGTGC
CGAAGATTGGTGGCGGCCACGGAGTCGGCAGTGAGGAATCTGCAGGTGTT
GTTTCCGATGGTGATGGTGCGAGAGGTAGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGGGTGGGGAGAGGGATGAGATGGAAATGGAAAGCGCTCAGGGG
AAGGCATTGATGCCAGCGGGTCTAGGGGTGCCCTCTGCTGCTGGTCGTCG
TCCTTCTATCGTGGCGGAGGAGGAAGAAGAGGAGGGAGGGAGGGAAGAAG
AGGAGAGTGACGAGGAGAGCTTGGAGGAGGGAGAGATACGGGAGGAGACA
TACACACCCAAGAGTTTGGCCCCTCTCGGAAGTAGGAGGTCTATGGCCGG
CTCGCCCGTTACTACAGCAGCAGTATCAGCCACAGCTGCAGAGTCAGAGG
AGTTGCGAAGCTTGGTGGAGGATGTGGGGCTGCAGCTGGTGGAGGGCGAG
GAGGAGGAGGAGGAGGAGGCAAGGGACGACAAGAAGGCAGAGGAGAAGGA
GGTAGGAGTAAGGGAGGATGACGTTGCTACTACTGCTGGCGTGAGCTCTG
CTGCTGTTGAGGCGGAAGCGGCGTCACTGAGTGAGGAGATGACGGAGGAG
GAGAACGAGAAGGAGGACGGAGACGAGGAGGACGAAGAGGAAGGGGTGGA
GGGGGGGGGGAGACAGCAGCGGCAGAGGCAGCAGCAGAAGGACAAACGCT
CCTTGTGGAGgtggtggcagaaaatgaaaacgaggaggaggaggaggagg
agataccccgtccacgggaccttgatagCCCACCGAGCATGTCTGACTTG
GGCCTCTCTCACTTCACGCGTCGTTTCATCGAGGCTGCGAAGGAGGAGGG
CAAAGAGGGCGAAGATGGCAATGACAAGACCATGCGGGTTCATGGGAGAA
ACGACGCCTCTTCTTCCATCATGTCCGCTAGCCCGGCCTCCCCTGTCTTG
CCCCGAGAGAAAAGCTCTGCAGCAGCAGCAGCAGCCGCAGCAGCAACACC
ACCGGCACCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAAGCAGCAGCAGAACCTCCCGGGACG
CCCACCATCTCGATGCCATGTGCGGATGGCATGCGAGAGTTCCCCTCACC
CGTCTTCCGCACAGGGGTCAAGCTCCGACACCCCCCCAGCGAGCAACACC
GACACTTCTCCTCCTCTGCCTCCAGAAAAGGGGCGTACACGCACGCCTCG
GGCGGCTCCTCCACCTCCTCCTCCACCTCCTCCTCCTGTCGCTCTCCCGC
TCTCTTTGAGCCCCAAAGCGTCAACAAGCAAGGAGTCCGTCGCTCACTGC
ACGCGCCTTACCTGGCACCCCTCATCCCCCCTTTCCCTTCCTCCCCTCTG
CTGGAAAGCGTCGACCGAGGGCAACAGCCCGACGAGCACCACACCTCCTT
CGCTTCCTCCACTGCCACCCCGGCCATGCACAGCCCCTCCCTTCTCCACC
GCCACCCGACCACAGCAGGGGCCACGGGCAGAAGCAGTAATAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAAGATGGGTAGTAGCAACACCAA
TCGCTCCCTCGCTCTTCTCCGAGGCAGTGGTACTGTTGCTCGCTCCCCTT
CCTACTCGGCTGCGTCTGCCGCTGCTTCTGCGCGTTCCGACGATCCCACC
CCAGAACTGACCTCGCCCGCGAAGACTCCTTTCCGTGTTCTCCCCTCGGG
GGGAGGGGAGAGTGGAGGTGATGGAGGAGGAGGGGAGGGAGGGAGTGAAG
GAGGGACGCCGAGTACGGCTAGATGCATTCGATTGTTGCAATTCCCACCT
GTGAGCGCTGGGGGGACAGTTCGAGGAAGGATGGAGGGAGGAATAGAAGG
AGGGAGGAGCAGTGACGGTCGTAGGTCCATGAGTCGGACGCCTGCAGGAG
GGGCTGCGGCTGCTGTTGCTGGAGGGGAGGGAGTGAGAGAGGGAGGGGAG
GATGTGATGGTGATGGGGGAGGAGGAAAGTTTTACGGCCAATTATCCTGA
CTTGATCCGTCACTCGACGAGCTTCGTCTTCTCACCCAACCGGCTGCTAG
GGCTGGGGTTGGATGAGGACGGGAGGGAAGGAGGGAGGGAGGGAGGGCCT
CGGTACTACTTGCGGAGTGCGGAGAAGAAGGCGAGGGAGTTGGCGATCGC
AAAGAAAGAGGAGGAGGCGGCGGCAAGACGGGCAGCGGCGGCTCGTGCTC
TGGCTGCGGCCAGACGAAGCCCGCGGCTTGCGTCTCTGAGCAAAAGCCCC
ACAAGCAGTGCAATGAGCGTAGTTGCATCGTCTGCTTCTACAACGACCAT
GCCGTCCTCTTCCCCCTCGGTGGTGGCGTCGACCGTCCAAACTCCCGTGA
GCAACACGCGGAAGTCCCCCCGCATCGCGCGGATGGCGTTGGAACGAGAG
GGTGGGAGTGTGCGGCATGGGCCAGGACGAGGCGGTTTGTTTGCGTCTGA
TGTAGAGGCGGAGGCCGAAAACGGAGGTAGGGAGGGACCCGTGTGTCGAC
CGATCCCCGCGGTGGGGTCCGATGAATACGCAAAGACACCAAGCTTTATT
CAGATGCAAGTGACCAGAGAGATGTTGAATGGGGCGATTGGCGCGTTTAA
TGCCTATGTGCGGGAGAGGACAGGAGGGAGGAACGGGGAGATGGACGCCT
TGCCTTTGGATAGGGTGACGGAGGTGATTGCACAGGGGGATGCGGGCAAG
ACGGTATTGCTCTCTCTCATTCATTTGAAGCGGGTGGGTATCTCTGTGAC
AGCGCAGGGGCAGAAGGCGTACAAAATTTGGAAGTAAGGGAGGGAGAGAG
AAAGGGAGAAAAGTAGAGAGAGAGAACGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGTGAATGAGAG
AGTGTGTGTGTGAAAATGAGAGATGCGAAGCAGCTAGCACGATTCATTCG
AATTGAAAAAAAAAAGAACTAAATGGCAAAGGAAGACAGCCGAGTGTTTT
CATCCAGAAAGCTTTGTCCGAGCAGAGGGGAGGCCGTAGCTTGTCTGTCT
GTCTCTGTTTGTTAGCGTGTGGGCATATGTCCCTCTTGTGCGGACGAAAA
ATATGATGGAAAGCGAAAAATAAAGCTGAAGATAATGATACACAGGGGTG
ACTTTCACGAGATAAGCCAAAATTTTCGTTTAGCTGGTATGCACACCAGT
GGAACAAAAAAAGTAATGCAAACTCAACATTTTCATCCACTTTACTCGTA
TCAAAGCCAAAAAAATGTGCTAGAGCTACCTCCCGAGGTCTACTGCCACT
TCTTTTTGTGCCGAGACCGTTGATCCTTCTCCAATTCCGTGGCAGGAAAT
GTGCCAGGAGCGCGGATACTCTCCCAGGGCCATCACTTTGTCTTCTTCTT
CCCCTCCAACTGGCTCGCCCCCAGGTGGCCCACCACATACAGGGGCATGA
AAAAACAAACCACCTTCCTGGATATCCCCCTACGCCAGCAACACCAACGC
AGGCCCGGGGCAGAGCCCTATCATTCCCCACCCGATCCCAAACACGGCCT
CGCCCACCACAAGCTTCAGTCAACCTAAGGCTTGGGGGTGGGGTAGGGGG
TAGGGGGTGGGGGTGGGGTTGCCTACGAGAGGCCACAAAAATCAAAGTAT
GCGACAAATGCCACACCACCTGGATCTACTCTAGTAAAAGGCGAGAGAGA
TTTCCATGGTTGATGGTGAGGCTGTGCTGGTAGATATGACGTACACCTTT
GATGTATATTCGAATGAAGCCAAAACAAAAGAGTGATTCAGTTTTGTGTA
TACTACTGCCTTCCAGACTTGCATTTTTCTTCGTGCAAGCTTGACTTAAC
AATAGAGTAGCGTGGTGAGCTTTGTAAGGTGTGAATGTTGGTGCCTGCGG
CGTTGGTTTTCTGTGGTGCTCGCCTGATGTCTCGCAGCCAGCCATCCATC
CGATTCCGTCTCACGAAAGATGGGGGAGGTTACATTTTCTCATATGTCGG
CAAATTTCTTCATTGTCAAGGGCCAGCAACCGCTGGCAATGACGAAGACG
ACACCAATGGATTTATAAGAACCTGTTCTATTTTTTTTCATCGTAGCTTA
GCAGGTTAAATCAGGTTCCCAGCACTTGACAGGGGGAGAAAACTCA
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protein sequence of NO11G02450.1

>NO11G02450.1-protein ID=NO11G02450.1-protein|Name=NO11G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1173bp
MEPPAMRPSVGGAPRRRASMAPGASVSSSLRGGLMPIAINGTSTSATTKS
ILKQSQPQRRRESLAVISRLAAHQKQQDHYDENHGPPAREEPRLPFHRSS
RQQHRKPAPDPASGNEENVAHAFNTTILSSSSSSRTGSSSSFLAKPVAST
ISAAATTLSCAASNPTTPARKPKPPAKLSGTASKISTATPQRLQQDASTM
LIRLRQALARVQGESQRLSTFAQQPRLKTHGGAASAAAHPRPSAEVLDMC
RRLVAATESAVRNLQVLFPMVMVREVEGGREGGREGGGERDEMEMESAQG
KALMPAGLGVPSAAGRRPSIVAEEEEEEGGREEEESDEESLEEGEIREET
YTPKSLAPLGSRRSMAGSPVTTAAVSATAAESEELRSLVEDVGLQLVEGE
EEEEEEARDDKKAEEKEVGVREDDVATTAGVSSAAVEAEAASLSEEMTEE
ENEKEDGDEEDEEEGVEGGGRQQRQRQQQKDKRSLWSPPSMSDLGLSHFT
RRFIEAAKEEGKEGEDGNDKTMRVHGRNDASSSIMSASPASPVLPREKSS
AAAAAAAAATPPAPGGGGGGGGGGGGGGGGGGGGGEAAAEPPGTPTISMP
CADGMREFPSPVFRTGVKLRHPPSEQHRHFSSSASRKGAYTHASGGSSTS
SSTSSSCRSPALFEPQSVNKQGVRRSLHAPYLAPLIPPFPSSPLLESVDR
GQQPDEHHTSFASSTATPAMHSPSLLHRHPTTAGATGRSSNSSSSSSSSS
SSSKMGSSNTNRSLALLRGSGTVARSPSYSAASAAASARSDDPTPELTSP
AKTPFRVLPSGGGESGGDGGGGEGGSEGGTPSTARCIRLLQFPPVSAGGT
VRGRMEGGIEGGRSSDGRRSMSRTPAGGAAAAVAGGEGVREGGEDVMVMG
EEESFTANYPDLIRHSTSFVFSPNRLLGLGLDEDGREGGREGGPRYYLRS
AEKKARELAIAKKEEEAAARRAAAARALAAARRSPRLASLSKSPTSSAMS
VVASSASTTTMPSSSPSVVASTVQTPVSNTRKSPRIARMALEREGGSVRH
GPGRGGLFASDVEAEAENGGREGPVCRPIPAVGSDEYAKTPSFIQMQVTR
EMLNGAIGAFNAYVRERTGGRNGEMDALPLDRVTEVIAQGDAGKTVLLSL
IHLKRVGISVTAQGQKAYKIWK*
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Synonyms
Publications