NO11G02430, NO11G02430 (gene) Nannochloropsis oceanica

Overview
NameNO11G02430
Unique NameNO11G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1973
Alignment locationchr11:770837..772809 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna-lysidine synthetase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:770837..772809 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0016879ligase activity, forming carbon-nitrogen bonds
GO:0016879ligase activity, forming carbon-nitrogen bonds
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0008033tRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR012094tRNA_Ile_lys_synt
IPR011063tRNA-lysidine/thiocyt_synth
IPR012796Lysidine-tRNA-synth_C
Homology
BLAST of NO11G02430 vs. NCBI_GenBank
Match: EWM24970.1 (trna -lysidine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 567.4 bits (1461), Expect = 5.400e-158
Identity = 304/598 (50.84%), Postives = 387/598 (64.72%), Query Frame = 0
Query:   70 SATVTTTPSQGHDDAARLLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRE-----------------LQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIG------MKNAIS------------------------------LWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEI-----GL-EGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEE---WDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRXXXXXXXXXXXXXXXXXXXXXXXXXVLGLYPTGHVAAA---PAGANVNVQPLGLRFKR 603
            S T  T+P   ++ ++ LLD +EA LKGPC L + +G+ P H +V+AVSGGADSMALLHLL R+R RW+PPL LTVAHFNHGLRPEA  +EE FV +AAA L VP+H   W E ER+++  +Q RAR WRR ECERL++E                 + +        +   AQGVIATAHHADDSLETW +KLLRG H+SH +GM PRAG YVKPLL++ K RLVRFLE +GL W+ED SNQ +KYKRNKVRL+LLPLMAE+AGGE AL ARMEEM  QS+GLE+W+   A  WE RHSA APLD+V +G EL +G      + +A+S                              LWAPL RLL+EELLHR  AR + GA+SL+Y Q+RR MEQL+RDE+E +GG KKKL+WRL++G+GW+L RQG VLR+++++      G+ +  +  +S+ + G+   +PTGW++ A R+  S S SS     W ++LPHVPTGARL LRHRQ+GDRFHP WR   +KLKDFLR QNVPLHRR                         V+GL+P G VAA        N  ++PL +R  +
Sbjct:   72 SVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAV-KEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRR------DEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMK 662          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_005853726.1 (hypothetical protein NGA_2025700, partial [Nannochloropsis gaditana CCMP526] >EKU22633.1 hypothetical protein NGA_2025700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 288.1 bits (736), Expect = 6.300e-74
Identity = 159/345 (46.09%), Postives = 209/345 (60.58%), Query Frame = 0
Query:  306 LKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIG------MKNAIS------------------------------LWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEI-----GL-EGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEE---WDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRXXXXXXXXXXXXXXXXXXXXXXXXXVLGLYPTGHVAAA---PAGANVNVQPLGLRFKR 603
            L+LLPLMAE+AGGE AL ARMEEM  QS+GLE+W+   A  WE RHSA APLD+V +G EL +G      + +A+S                              LWAPL RLL+EELLHR  AR + GA+SL+Y Q+RR MEQL+RDE+E +GG KKKL+WRL++G+GW+L RQG VLR+++++      G+ +  +  +S+ + G+   +PTGW++ A R+  S S SS     W ++LPHVPTGARL LRHRQ+GDRFHP WR   +KLKDFLR QNVPLHRR                         V+GL+P G VAA        N  ++PL +R  +
Sbjct:    1 LRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRR------DEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMK 339          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: KOO24294.1 (tRNA -lysidine synthetase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 224.6 bits (571), Expect = 8.500e-55
Identity = 181/522 (34.67%), Postives = 239/522 (45.79%), Query Frame = 0
Query:   99 CGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRA--RWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEAS--------AWEGRHSAEAPLDIVQSGNELCI------------GMKNAISLWAPLSRLLK----------EELLHRFVARVTKGA-----------ISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHET--------GLTFSVPTGWEVEAKRIE----------------------ISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            CGL  G        ++++VSGG+DS+ALL +L  + +  +WD    L   HFNHG R E ++EEEVFVR+ AA   VPMHV    E +RA    +QER R WRR E   ++  L          +    +G +   HHADD LET  +K LRG HLS+  GM  + G +V+PLL  RK  LV +L + G EW+ED SN + KYKRN+VRL+LLPL+ E+ GG   L AR+  +  QS  L EWL H+AS         W     A   L + +   ++ +            G++ A S  A  S L            E +     ARV  GA            S+ Y Q+ R   QLER             EW LD+    ++ R GD+L V         A       ET        G+T   P GW+V  +  E                      I    ++    + L  VP  A L LR  + GDRFHP WR   I L +FLRGQ V L RR
Sbjct:    2 CGLGAGA------PVLISVSGGSDSVALLRVLVELNSQLQWD----LAAVHFNHGFRRE-SEEEEVFVRSLAAEHGVPMHVRRLAEADRALANGVQERTRAWRRTESLAILSSLDAAPEHGSGGR-EQPRGAVMLGHHADDQLETIVLKGLRGCHLSNLHGMRWQDGPFVRPLLGQRKSELVAYLRALGQEWREDASNAVPKYKRNRVRLQLLPLLEELTGG--GLHARIGVLEQQSAQLREWL-HQASHAHLTADPFWSTSAGARG-LSVARLRQQVPMVQDEVLHLLVRDGVEAAESSAADASELEMESPSEIGDEIESVEGAEGARVVAGAPERPSEGSSDGYSVPYAQLVRLRTQLERPST----------EWTLDLAGCCIVQRVGDLLTVAPTRPARRPAETTTEDEETLRGSVALDGVTVRFPVGWDVRVRWAEDGGGVAEAHATSAEAAAGAAGAIPDDAAAMHEVITLHSVPPDAVLELRTPRPGDRFHPLWREAPIGLTNFLRGQRVALERR 497          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: CBJ48957.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 223.4 bits (568), Expect = 1.900e-54
Identity = 168/478 (35.15%), Postives = 231/478 (48.33%), Query Frame = 0
Query:  113 IVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQT----TAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSG--NELCIGMKNAISLW--------------APLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEI-------GLEG---ASRMISMHETGLTFSVPTGWEV------EAKRIEISLSPSS-------EEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            ++V VSGG+DS+ALL  L R    + PPL +  AHFNHGLR + +  ++  V   A +L+VP+HV  W   E   T    + +QERAR WRRAE + ++ +                +GVIATAHH DD  ET  +K LRG H+++ +GMA  +  +V+PLL   K  L+ FL      W+ED SNQ+ KY RN+VRL+L+PL+ E+AGG  AL  R+EE++ QS    + +  EA  WE  H +    D    G  +E                          AP S + +EE   +   R   G      G     + +L R+E          L  R  V         GD+LR+ +          GLEG   + + I  H T       T WE+      E   + +     S        E  ++L +V  GARL +R ++DGDRF PAWR    KLKDFLRGQ VPLHRR
Sbjct:   35 VLVLVSGGSDSVALLLALERAAKTFQPPLRVEAAHFNHGLRGKDSDADQDLVVKMADSLRVPLHVRRWKGPEEGGTGGPGSGMQERARRWRRAEAKDILAKSMTEAGAG-----RGGRGVIATAHHKDDQTETVLLKALRGAHITNIQGMAWHSDPFVRPLLGAHKTELLDFLVRGRHAWREDGSNQVAKYARNRVRLQLIPLLRELAGGTKALDTRVEELSRQSHFARQMVEREALRWERAHLSGCRFDDEAGGCRDEXXXXXXXXXXXXXXXXXXXXXXXXDVAP-SGIRREEFPLQAFLRKGPGGDGSEQGWAGSDLPELVREE----------LLHRFIV---------GDLLRIEQSPADGGIMVSGLEGRTVSEQGIVRHSTDAAI---TPWEMVVSPWGEGGSVGLGEEGDSGHGEGRATEAGMVLFNVAAGARLHVRRKKDGDRFRPAWRDRPAKLKDFLRGQGVPLHRR 484          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: EJK54930.1 (hypothetical protein THAOC_25393 [Thalassiosira oceanica])

HSP 1 Score: 208.0 bits (528), Expect = 8.300e-50
Identity = 158/487 (32.44%), Postives = 222/487 (45.59%), Query Frame = 0
Query:  109 PFHTIVVAVSGGADSMALLHLLAR-------------------VRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVW---------GEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRA---------------GIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKR---IEISLSPSSEEWDLILPHVPTGARLLLRHRQD--GDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            P   +++AVSGG+DS+ALLH + R                   V   +D P  + VAHFNH  R E +  +E+ V +      +P H   W          EV   +    Q  AR WRR E + L+ +L              A G I TAHH DD+ ET  +KLLRG+HL++  GM  R+               G +VKP L +RK ++V FL S   EW+EDESN  +KYKRNK+R +L+PL++E+AGG+ A+  R   +  QS+ +   LA           A+  LD +   +E  +              L  EE LH +V+R T G + L Y Q+ R   Q+             +L+W LD+G  W L R GD L V +     EG        + G     P  W V   R    E  + P   E  L    +  G+ L+++  +D     F P W+   IK+ +FLRGQ VPL RR
Sbjct:  112 PVVVLLLAVSGGSDSIALLHSVLRSVESSVIDDERTLCLKLGVVGDEYDVPCQVHVAHFNHEQRGENSDGDEMLVESLCRESGLPFHCYRWSDGSTCLESSEVNGNKDVFSQNTARRWRRRELKNLLSDL--------VPSKGHAFGAILTAHHRDDADETILLKLLRGSHLTNLAGMEARSDPFELGGSDQRSRMLGYFVKPCLELRKTQIVDFLTSNSYEWREDESNSSNKYKRNKIRNELMPLLSEIAGGDEAIHTRFRNLEQQSREIGMDLALR---------AQQHLDEMNCDSEFRLDANGRFD-------LAHEEALHLWVSRATCGRLCLAYDQMTRIRGQILM--------HPTRLQWELDIGKRWRLKRNGDCLTVSR-----EG-------QDDGTDLVRPMTWTVHPSRECYSEGDIGPDGVE--LAFDGIAEGSPLVVKRVKDIGNLSFKPPWKENPIKITEFLRGQRVPLSRR 552          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_005829663.1 (hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712] >EKX42683.1 hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712])

HSP 1 Score: 204.5 bits (519), Expect = 9.100e-49
Identity = 154/490 (31.43%), Postives = 244/490 (49.80%), Query Frame = 0
Query:   79 QGHDDAARLLDEIEASLKGPCGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARW----DPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVE----RAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGI---YVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWE-GRH--SAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKR-------IEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            QG    + L  ++  +L+G CG+      +P  ++VV VSGG+DS AL+ LL  VR       +  LS+ V HF+HGLR E ++EE  FV   A    +P ++    E +    R  +  +QE  R WRR     +  ++++        +P   +  + +AHH+DD LET  MKLLRG H+S   GM  +  +    ++PLL++ K+ LVR+L+    +W+ED SN    YKRNKVR++L+PL+ ++ GG+ AL +RM  ++ QS  L++W+     A + GR       PLD                  +A    LL+  ++H+F++      I L+Y Q+ +  +QLE   N         L W LD+G GW + R G +L V ++E  L   S  I + +  +   V   W V           +E       E+    + +VP G+++++R +  GDRF P       +LK FLR Q +P+  R
Sbjct:   62 QGGSKISPLGRKVMQTLEGRCGM-----QLP-ASLVVGVSGGSDSTALMLLLDEVRQEHEGGEEGQLSINVVHFDHGLRAE-SKEEAKFVEGLARDRGMPFYMQALDEADAARFRENSGGMQEYTRIWRRKVMGEVAAKIKE------QSRPD-TKVYLVSAHHSDDQLETILMKLLRGAHISKLHGMKYKDDLDPPMLRPLLDISKQELVRYLKDLQQDWREDSSNHESTYKRNKVRIQLIPLLQDLCGGKHALASRMNGLSHQSMQLQQWMEEVTPAIKFGRRFDKRTLPLDF----------------FYAESRELLRNSVIHQFISSEASDLI-LSYTQLLKIAQQLEEHPN--------NLNWSLDLGKGWQVLRSGPLLMVDREEGELPNGSVDI-LGDVNVGVEVDGPWSVMVTAGQKPPPPVEGKRRVLPEDVCFTIHNVPAGSQMIVRTKLAGDRFFPKGVGKDERLKHFLRFQRIPVKER 511          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: OLP85529.1 (tRNA(Ile)-lysidine synthase [Symbiodinium microadriaticum])

HSP 1 Score: 193.4 bits (490), Expect = 2.100e-45
Identity = 164/472 (34.75%), Postives = 228/472 (48.31%), Query Frame = 0
Query:   99 CGLPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHV-VVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWE--------GRHSAEAP-----LDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVI--KDEIGLEGAS----RMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHP--AWRSGSIKLKDFL-RGQNVPLHRR 548
            CGL  G        +V+ VSGG+DS+ALL L+++V   +    +L V HFNHGLR E+A EE  FV   A +     H+    G   +A    +Q  AR WRR E  +L+  L+            +  G +  AHHADD +ET  +KLLRG HL+   GM    G + +PLL +RK+ L  FL+S G EWKED SNQ   Y+RN++RL+L+PL+ E+ GGE AL  R E +  QS+ L   L                G H A AP       ++   + L + ++  I  +  L  ++++ELL RFVA  T     L+Y  VR     L   +N +E        W L  G GW L +      V+  K+E   E  +    R++     GL+  V  G  +E      S S + +     L  VP  A + LR  Q GDRF P  + R+ +IKL  FL R   VP   R
Sbjct:  319 CGLDVGP-----RPLVLCVSGGSDSVALLLLVSQVAQTYG--WNLHVLHFNHGLRQESASEES-FVEGLALSADAKFHLRRADGAGLKAAAGGLQAAARAWRRQEALQLLESLE--------GSAASGSGAVLLAHHADDQVETQLLKLLRGGHLARLSGMNLMEGRFARPLLGIRKQELQAFLKSVGQEWKEDASNQEPVYQRNRIRLQLVPLLTELIGGEDALHGRFEALAEQSEQLSSMLEDACKEVGGPSFPESFGEHEAGAPEAQEMQRVLDISSFLGLKVEELICCFGQLPEMVRQELLWRFVA--TGCGSMLSYPAVRAIAGGL-ASKNSSE-----PFTWPL--GSGWQLRKMAKPELVLSHKEESQEEAWTVEDLRVLHNFAPGLSLRVARGGTLE------SHSEAGDSSCRFLLDVPLNATVALRGAQPGDRFCPGLSSRARAIKLTYFLHREMKVPTEAR 758          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: GAX24903.1 (tRNA(Ile)-lysidine synthase [Fistulifera solaris])

HSP 1 Score: 193.0 bits (489), Expect = 2.800e-45
Identity = 139/460 (30.22%), Postives = 222/460 (48.26%), Query Frame = 0
Query:  113 IVVAVSGGADSMALLHLLARVRARWDP--------------PLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRRAECERLVRELQQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHTKGMAPRAG-------IYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAW--EGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSG--SIKLKDFLRGQNVPLHRR 548
            ++  +SGG DS+AL H L  ++ + D                  L   HF+H  R E +  +  FV        VP   V W +  ++  +  QE+AR WRR    R +++L              A G I TAHH DDS ET  +KLLRG+HL+   GMAP           +V+PLL++ K +L+ +L+  G  W+EDESN+ D Y RN+VR +L+PLM +V GG+ A   R++ M  QS+ L   LA + + +  E  H      D       +    K+   L      L+ EE L+ +VA         TY Q++R + Q+      T+  +++K  W L++G GW + R+GD+LR+++  + L+   R  +     +  ++P  W+ ++  +++ +    E++   +  + T +        D     P WR G   + LK+FLRGQ V LH R
Sbjct:   80 LLAGISGGCDSVALFHALQDIQQKDDSIPGSWTFVQNSYSITFLLHAIHFDHQQRGENSNADREFVEALCQQYNVPCTTVFWNDDHQSHESFSQEKARNWRRNHMRRRLQKL---------IADGNATGFIVTAHHLDDSNETLLLKLLRGSHLTKLAGMAPIVTDEMNDNLYWVRPLLSLSKNQLIAYLQDNGYVWREDESNEKDIYLRNRVRNELIPLMKDVMGGDVAFQKRLDSMEAQSQKLRCDLAAKVALFFQENIHQ-----DTACPSRTILHIPKDTDHL-----DLVFEEALYDWVANGCTNH-QCTYEQLQRLIRQI------TDYPQRRK--WSLNIGGGWDVQREGDILRIVESILPLDSVDRGHATQSVEIAVTLPEDWKSDSAHLQVQV--PKEKFSKQIKFISTTSSY-----DDNLLITPPWRRGRSPLNLKEFLRGQKVALHNR 504          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_005773520.1 (hypothetical protein EMIHUDRAFT_241637 [Emiliania huxleyi CCMP1516] >EOD21091.1 hypothetical protein EMIHUDRAFT_241637 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 184.5 bits (467), Expect = 9.800e-43
Identity = 163/489 (33.33%), Postives = 216/489 (44.17%), Query Frame = 0
Query:  106 GTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHV----VVWGEVERAQTTAIQERARGWRRAECERLVREL------QQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHT-----------KGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWL--AHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVI---------------------KDEIGLEGASRMISMHETGLTFSVPTGWEVE---AKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            G  P   +VV+VSGG DS+ALLHLL  ++ RW   L L V HFNHGLRPE+  +EE FV   A    +P+HV      W E   +Q   IQER+R WRRAE   L+ EL      Q             A  ++A AHHADD              +S T           +GM  RAG +V+PLL VRKE L  +L + G  W+ED +N    YKRN++RL+LLPL+ E+ GG   L+AR+   + QS  L EWL  AH AS    +H A  P     +    C           P SR              T G +SLT   +RR                    EW L++  GW+L R G  + +                      +D   ++ +   +++ E G+    P    V    AK     L P +    L L  + +   L LR  + GDRFHP  R   + L  FLRG +VPL  R
Sbjct:   46 GATPGQRLVVSVSGGCDSVALLHLLLALQPRW--RLRLHVLHFNHGLRPESG-DEEAFVHALAERHSLPVHVRRLPAGWRE---SQPGGIQERSREWRRAESLALLDELDAAGPPQFSSADADFADEPGAASLVALAHHADDQAGXXXXXXXGTRRVSVTCLGVGRRRRNLRGMEWRAGRFVRPLLGVRKEELSAYLGALGEGWREDATNAEPTYKRNRIRLQLLPLLEELTGG--GLLARLGAASEQSAQLREWLDQAH-ASNTPLQHPAPTP-----TARSNC-----------PPSRRTPH----------TVGRLSLTRDALRR--------------------EWVLELSGGWLLRRTGATVSIAGAEVAAAEPAEKGHVPLTASERDTTAVQASVAELAVGEAGVRLRHPAELAVRAGVAKGPRAELPPGA--LALRLGGLGSERELTLREWRRGDRFHPQGRRAPVSLSHFLRGLDVPLDER 477          
BLAST of NO11G02430 vs. NCBI_GenBank
Match: XP_005775249.1 (hypothetical protein EMIHUDRAFT_195201 [Emiliania huxleyi CCMP1516] >EOD22820.1 hypothetical protein EMIHUDRAFT_195201 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 184.5 bits (467), Expect = 9.800e-43
Identity = 163/489 (33.33%), Postives = 216/489 (44.17%), Query Frame = 0
Query:  106 GTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNHGLRPEAAQEEEVFVRNAAATLQVPMHV----VVWGEVERAQTTAIQERARGWRRAECERLVREL------QQXXXXXXXXKPTAAQGVIATAHHADDSLETWAMKLLRGTHLSHT-----------KGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYKRNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWL--AHEASAWEGRHSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGAISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLRVI---------------------KDEIGLEGASRMISMHETGLTFSVPTGWEVE---AKRIEISLSPSSEEWDLILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRR 548
            G  P   +VV+VSGG DS+ALLHLL  ++ RW   L L V HFNHGLRPE+  +EE FV   A    +P+HV      W E   +Q   IQER+R WRRAE   L+ EL      Q             A  ++A AHHADD              +S T           +GM  RAG +V+PLL VRKE L  +L + G  W+ED +N    YKRN++RL+LLPL+ E+ GG   L+AR+   + QS  L EWL  AH AS    +H A  P     +    C           P SR              T G +SLT   +RR                    EW L++  GW+L R G  + +                      +D   ++ +   +++ E G+    P    V    AK     L P +    L L  + +   L LR  + GDRFHP  R   + L  FLRG +VPL  R
Sbjct:   45 GATPGQRLVVSVSGGCDSVALLHLLLALQPRW--RLRLHVLHFNHGLRPESG-DEEAFVHALAERHSLPVHVRRLPAGWRE---SQPGGIQERSREWRRAESLALLDELDAAGPPQFSSADADFADEPGAASLVALAHHADDQAGXXXXXXXGTRRVSVTCLGVGRRRRNLRGMEWRAGRFVRPLLGVRKEELSAYLGALGEGWREDATNAEPTYKRNRIRLQLLPLLEELTGG--GLLARLGAASEQSAQLREWLDQAH-ASNTPLQHPAPTP-----TARSNC-----------PPSRRTPH----------TVGRLSLTRDALRR--------------------EWVLELSGGWLLRRTGATVSIAGAEVAAAEPAEKGHVPLTASERDTTAVQASVAELAVGEAGVRLRHPAELAVRAGVAKGPRAELPPGA--LALRLGGLGSERELTLREWRRGDRFHPQGRRAPVSLSHFLRGLDVPLDER 476          
The following BLAST results are available for this feature:
BLAST of NO11G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24970.15.400e-15850.84trna -lysidine synthetase [Nannochloropsis gaditan... [more]
XP_005853726.16.300e-7446.09hypothetical protein NGA_2025700, partial [Nannoch... [more]
KOO24294.18.500e-5534.67tRNA -lysidine synthetase [Chrysochromulina sp. CC... [more]
CBJ48957.11.900e-5435.15conserved unknown protein [Ectocarpus siliculosus][more]
EJK54930.18.300e-5032.44hypothetical protein THAOC_25393 [Thalassiosira oc... [more]
XP_005829663.19.100e-4931.43hypothetical protein GUITHDRAFT_164075 [Guillardia... [more]
OLP85529.12.100e-4534.75tRNA(Ile)-lysidine synthase [Symbiodinium microadr... [more]
GAX24903.12.800e-4530.22tRNA(Ile)-lysidine synthase [Fistulifera solaris][more]
XP_005773520.19.800e-4333.33hypothetical protein EMIHUDRAFT_241637 [Emiliania ... [more]
XP_005775249.19.800e-4333.33hypothetical protein EMIHUDRAFT_195201 [Emiliania ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002012NSK002012Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02430.1NO11G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639668gene_5138Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100186g4gene5524Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02430.1NO11G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02430 ID=NO11G02430|Name=NO11G02430|organism=Nannochloropsis oceanica|type=gene|length=1973bp
CAGGTCAGGACGTTGAGGGGCTCCTGGCCGCCATGATAACCAGGCATCTT
TAAGCACAAGCACCCTCGCCACCATCTACTACCGTCAGGCCTTTACATTG
GCATCGTACATGTCCTGGAGGAGGCTGTGGCGTCCACGCAGCCAGATCAT
CCCCGTCATTGCCATGCTTCTGCTGCGGGGCTCATTCACTACTCATGTGC
GGGCCGCGACTGTCGTCGTCCCCAGCACAAGTGGCAGGACAGCAGCATTC
ATTCTTCCCATCAACACAAGAACACGCGCTCACCCGCTTCATCGGACACC
TTCCATCTACTCCTCATCTGCTACTGTGACCACTACCCCATCCCAAGGTC
ACGATGACGCTGCCCGCCTACTAGATGAGATCGAAGCCTCTCTCAAAGGC
CCTTGTGGCTTACCCAACGGCCAGGGAACCATGCCGTTTCACACCATCGT
TGTCGCTGTTTCGGGTGGAGCAGATTCCATGGCTTTATTGCACCTCTTGG
CCCGGGTTCGTGCCCGATGGGACCCGCCTCTCAGCCTTACTGTCGCGCAT
TTCAATCACGGCTTGCGTCCCGAGGCAGCGCAGGAAGAAGAGGTGTTTGT
CCGCAACGCAGCAGCAACTTTGCAGGTACCCATGCACGTCGTAGTGTGGG
GAGAGGTGGAGCGGGCGCAAACCACGGCCATCCAAGAACGGGCCCGGGGT
TGGCGCCGAGCCGAATGCGAGCGACTCGTGCGGGAGCTGCAGCAGCAGCA
GAGAGGAGGAGCAGCAGCAAAACCAACAGCAGCGCAAGGTGTGATTGCCA
CGGCGCACCATGCCGACGATTCTCTTGAGACCTGGGCGATGAAACTCTTG
CGAGGGACACATTTAAGCCACACAAAAGGAATGGCACCACGCGCGGGCAT
TTATGTCAAGCCCCTGTTAAACGTCCGCAAAGAAAGACTCGTTCGCTTCC
TGGAATCCCAAGGCCTGGAATGGAAAGAAGACGAGTCCAACCAGATTGAT
AAGTACAAACGGAATAAGGTACGTTTGAAGTTGTTGCCATTGATGGCTGA
GGTGGCCGGGGGCGAAGCTGCCTTGATGGCAAGGATGGAGGAGATGACCT
GCCAAAGCAAGGGGTTGGAGGAGTGGTTGGCCCATGAGGCGAGTGCCTGG
GAGGGACGCCATTCAGCAGAGGCACCGTTGGATATCGTTCAAAGTGGGAA
TGAATTGTGTATCGGTATGAAAAATGCGATTTCTCTATGGGCGCCCTTGT
CTCGTCTGCTCAAGGAAGAATTGTTGCACCGCTTCGTGGCCCGTGTCACA
AAAGGTGCCATCAGCTTGACTTACGGCCAAGTTCGTCGAACGATGGAGCA
ACTGGAGAGAGATGAGAATGAGACGGAGGGAGGACGGAAAAAGAAGTTAG
AATGGCGCCTGGATGTAGGAGACGGGTGGGTGTTGGGTCGGCAGGGCGAT
GTGTTACGGGTAATAAAGGATGAAATAGGTCTAGAAGGAGCAAGCCGTAT
GATCTCCATGCACGAGACAGGCCTCACTTTTTCCGTGCCTACAGGTTGGG
AAGTAGAGGCGAAGCGCATAGAGATCTCTCTTTCTCCTTCATCAGAAGAG
TGGGATTTGATCCTCCCTCATGTCCCCACGGGAGCCCGTCTCCTGCTTCG
GCACCGGCAAGACGGCGACCGCTTCCACCCTGCATGGCGCTCGGGTTCTA
TCAAGCTCAAAGACTTTCTGCGGGGTCAAAATGTGCCCTTGCACCGACGG
GACGAGATCTTACTGGTGGTGTTGCTGTCGGCCAGTGGGAAGGAGGAGGA
GGAGGAGGCGGAGGAGGAGGAAAGAGTATTGGGTCTCTACCCAACAGGGC
ACGTGGCAGCGGCGCCTGCGGGAGCAAATGTTAATGTACAACCTTTGGGG
TTGCGATTTAAAAGAGAGGGATTATGAACGTGTAAAAAGTAATGTAAAGA
AAAAAGAATCGGAAAGAATGACA
back to top

protein sequence of NO11G02430.1

>NO11G02430.1-protein ID=NO11G02430.1-protein|Name=NO11G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MSWRRLWRPRSQIIPVIAMLLLRGSFTTHVRAATVVVPSTSGRTAAFILP
INTRTRAHPLHRTPSIYSSSATVTTTPSQGHDDAARLLDEIEASLKGPCG
LPNGQGTMPFHTIVVAVSGGADSMALLHLLARVRARWDPPLSLTVAHFNH
GLRPEAAQEEEVFVRNAAATLQVPMHVVVWGEVERAQTTAIQERARGWRR
AECERLVRELQQQQRGGAAAKPTAAQGVIATAHHADDSLETWAMKLLRGT
HLSHTKGMAPRAGIYVKPLLNVRKERLVRFLESQGLEWKEDESNQIDKYK
RNKVRLKLLPLMAEVAGGEAALMARMEEMTCQSKGLEEWLAHEASAWEGR
HSAEAPLDIVQSGNELCIGMKNAISLWAPLSRLLKEELLHRFVARVTKGA
ISLTYGQVRRTMEQLERDENETEGGRKKKLEWRLDVGDGWVLGRQGDVLR
VIKDEIGLEGASRMISMHETGLTFSVPTGWEVEAKRIEISLSPSSEEWDL
ILPHVPTGARLLLRHRQDGDRFHPAWRSGSIKLKDFLRGQNVPLHRRDEI
LLVVLLSASGKEEEEEAEEEERVLGLYPTGHVAAAPAGANVNVQPLGLRF
KREGL*
back to top
Synonyms
Publications