NO11G02400, NO11G02400 (gene) Nannochloropsis oceanica

Overview
NameNO11G02400
Unique NameNO11G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length588
Alignment locationchr11:764848..765435 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransport protein particle bet3 containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:764848..765435 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048193Golgi vesicle transport
GO:0043087regulation of GTPase activity
GO:0065009regulation of molecular function
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR024096NO_sig/Golgi_transp_ligand-bd
IPR037992TRAPPC6/Trs33
IPR007194TRAPP_component
Homology
BLAST of NO11G02400 vs. NCBI_GenBank
Match: XP_005853437.1 (transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU22923.1 transport protein particle bet3 containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 160/183 (87.43%), Postives = 168/183 (91.80%), Query Frame = 0
Query:    1 MVADLPKQPSS----QQGKKAEYAESLFDYLFAAMIDTLRTGGDQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADDEATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIKRS 180
            M ADL K+PSS     Q KK E A+SLFDYLFAAMIDTLRTGGDQGPR EELLAETVRAIGFDVGYRLAES  QGRVL A++LEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRD+KFRWLAPFTA+DE+TRRAAATVLNFPCGLIKGALENLGI STVQAEVAPAVPSCSFTIKI+RS
Sbjct:    8 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRS 190          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: EWM24968.1 (transport protein particle bet3 containing protein [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 160/183 (87.43%), Postives = 168/183 (91.80%), Query Frame = 0
Query:    1 MVADLPKQPSS----QQGKKAEYAESLFDYLFAAMIDTLRTGGDQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADDEATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIKRS 180
            M ADL K+PSS     Q KK E A+SLFDYLFAAMIDTLRTGGDQGPR EELLAETVRAIGFDVGYRLAES  QGRVL A++LEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRD+KFRWLAPFTA+DE+TRRAAATVLNFPCGLIKGALENLGI STVQAEVAPAVPSCSFTIKI+RS
Sbjct:    1 MAADLLKKPSSTSSQHQNKKVECADSLFDYLFAAMIDTLRTGGDQGPRKEELLAETVRAIGFDVGYRLAESIAQGRVLAAESLEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDAKFRWLAPFTANDESTRRAAATVLNFPCGLIKGALENLGINSTVQAEVAPAVPSCSFTIKIRRS 183          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: XP_009042422.1 (hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens] >EGB02881.1 hypothetical protein AURANDRAFT_59697 [Aureococcus anophagefferens])

HSP 1 Score: 146.7 bits (369), Expect = 7.300e-32
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 0
Query:   42 GPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADD-EATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            GP+  E  +      G++VGYR  E   Q R L AD LE  V+KFICK+ W EIF KQIDKLQTN++GVFVL+D  FRWLA  ++DD EA +R  A +L FPCG+++GAL NLGI++TV AE    +PSCSF+I+I+
Sbjct:   19 GPQPGETASSRPELHGYEVGYRFVERIAQARALAADHLE--VIKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 152          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: CCI44811.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 144.4 bits (363), Expect = 3.600e-31
Identity = 74/139 (53.24%), Postives = 95/139 (68.35%), Query Frame = 0
Query:   40 DQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTAD-DEATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            +Q     E   + +  +GFDVGYR AE   + R  P   + ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D  FRWL+ F+A  DE+TR  A   L FPCG I+GAL NLGI + V A+V  ++P C F IKIK
Sbjct:   41 EQSRAMREDFLKKLEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 176          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: CCI44812.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 142.9 bits (359), Expect = 1.100e-30
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 0
Query:   53 VRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTAD-DEATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            +  +GFDVGYR AE   + R  P   + ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D  FRWL+ F+A  DE+TR  A   L FPCG I+GAL NLGI + V A+V  ++P C F IKIK
Sbjct:    9 LEGLGFDVGYRFAERYAKDR--PRMTMPLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSASADESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-SLPGCLFNIKIK 131          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: XP_009039529.1 (hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens] >EGB05689.1 hypothetical protein AURANDRAFT_7703, partial [Aureococcus anophagefferens])

HSP 1 Score: 141.7 bits (356), Expect = 2.400e-30
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   57 GFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADD-EATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            G++VGYR  E   Q R L AD LE   +KFICK+ W EIF KQIDKLQTN++GVFVL+D  FRWLA  ++DD EA +R  A +L FPCG+++GAL NLGI++TV AE    +PSCSF+I+I+
Sbjct:   12 GYEVGYRFVERIAQARALAADHLE--AIKFICKDVWNEIFGKQIDKLQTNHRGVFVLKDYTFRWLARVSSDDAEAMKRVTANILQFPCGVLRGALANLGIVATVTAEYG-TLPSCSFSIRIQ 130          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: CCA17537.1 (trafficking protein particle complex subunit 6B put [Albugo laibachii Nc14])

HSP 1 Score: 140.2 bits (352), Expect = 6.800e-30
Identity = 73/139 (52.52%), Postives = 93/139 (66.91%), Query Frame = 0
Query:   40 DQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTAD-DEATRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            +Q     E L + +  +GFDVGYR AE   + R  P     ++V+KFICKEFWI +FKKQIDKLQTN++GVFVL+D  FRWL+ F++   E+TR  A   L FPCG I+GAL NLGI + V A+V   +P C F IKIK
Sbjct:   41 EQNRAMREDLLKKLEGLGFDVGYRFAERYAKDR--PRMLEHLDVIKFICKEFWISVFKKQIDKLQTNHRGVFVLQDFSFRWLSSFSSSTSESTREMALVYLVFPCGFIRGALTNLGITAIVNADVT-TLPGCLFNIKIK 176          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: XP_008863329.1 (hypothetical protein H310_01802 [Aphanomyces invadans] >ETW07236.1 hypothetical protein H310_01802 [Aphanomyces invadans])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 79/178 (44.38%), Postives = 116/178 (65.17%), Query Frame = 0
Query:   12 QQGKKA--EYAESLFDYLFA----AMIDTLRTGGDQGPR-----NEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADDEA-TRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            QQG+    E AES F  L+A    +M++   T  ++ P      ++EL A+ + A G+DVGYR  E   + R  P     ++V+KF+CK+FWI IFKKQIDKLQTN++GVFVL+D  FRW+   + +++A +++ A   L FPCGL++GAL NLGI++ V A++  AVP C F IK++
Sbjct:    2 QQGQSGPHEVAESCFLQLYAEAVRSMVERHPTSAEKSPEDVWTPSDELTAK-LEAFGYDVGYRFVERFSRDR--PRMLEPLDVIKFLCKDFWIHIFKKQIDKLQTNHRGVFVLQDFNFRWIQALSGENDAESKQKALVFLIFPCGLLRGALANLGILAIVNADL-NAVPGCVFNIKLR 175          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: XP_002909490.1 (trafficking protein particle complex subunit 6B [Phytophthora infestans T30-4] >EEY58304.1 trafficking protein particle complex subunit 6B [Phytophthora infestans T30-4])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 76/171 (44.44%), Postives = 107/171 (62.57%), Query Frame = 0
Query:   18 EYAESLFDYLFAAMIDTLRTG-------GDQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFT-ADDEATRRAAATVLNFPCGLIKGALENLGIISTVQAEV--APAVPSCSFTIKIKR 179
            E A+  F  LF  ++ ++  G        ++   + E +   + A+G+DVG R AE + + R  P     ++V+KF+CK+FWI IFKKQIDKLQTN++GVFV++D  FRWLA  + A D+ TR  A   L FPCGLI+GAL NLG+ + V A+V    A+P C F IKIK+
Sbjct:    3 EVADGCFQQLFGEIVRSMVEGAAATTPTAEEEAAHREAVIIKLEAMGYDVGCRFAERSARDR--PRMLEPLDVIKFVCKDFWIAIFKKQIDKLQTNHRGVFVVQDFSFRWLAGISAATDQETREMALLFLVFPCGLIRGALANLGLTAIVNADVPDVRALPGCLFNIKIKQ 171          
BLAST of NO11G02400 vs. NCBI_GenBank
Match: OQR81006.1 (trafficking protein particle complex subunit 6B [Achlya hypogyna])

HSP 1 Score: 136.7 bits (343), Expect = 7.600e-29
Identity = 70/161 (43.48%), Postives = 106/161 (65.84%), Query Frame = 0
Query:   18 EYAESLFDYLFAAMIDTLRTGGDQGPRNEELLAETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQIDKLQTNNQGVFVLRDSKFRWLAPFTADDEA-TRRAAATVLNFPCGLIKGALENLGIISTVQAEVAPAVPSCSFTIKIK 178
            E AE+ F +L+   ++        G  + +L A+ + A G+DVGYR  E   + R    + L+  ++KFICK+FWI +FKKQIDKLQTN++GVFVL+D  FRW+   +A+ +A +++ A   L FPCG+++GAL NLG+++ V A++  AVP C F IKI+
Sbjct:    4 EVAETSFLHLYGEAVERHEAATGSGVLDNDLTAK-LEAFGYDVGYRFVERFSRDRARLVEPLD--IIKFICKDFWIHVFKKQIDKLQTNHRGVFVLQDFNFRWIHALSAETDAESKQKALIFLVFPCGVLRGALANLGLLAIVNADL-NAVPGCVFNIKIR 160          
The following BLAST results are available for this feature:
BLAST of NO11G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853437.11.200e-8287.43transport protein particle bet3 containing protein... [more]
EWM24968.11.200e-8287.43transport protein particle bet3 containing protein... [more]
XP_009042422.17.300e-3254.74hypothetical protein AURANDRAFT_59697 [Aureococcus... [more]
CCI44811.13.600e-3153.24unnamed protein product [Albugo candida][more]
CCI44812.11.100e-3057.14unnamed protein product [Albugo candida][more]
XP_009039529.12.400e-3058.20hypothetical protein AURANDRAFT_7703, partial [Aur... [more]
CCA17537.16.800e-3052.52trafficking protein particle complex subunit 6B pu... [more]
XP_008863329.11.200e-2944.38hypothetical protein H310_01802 [Aphanomyces invad... [more]
XP_002909490.11.200e-2944.44trafficking protein particle complex subunit 6B [P... [more]
OQR81006.17.600e-2943.48trafficking protein particle complex subunit 6B [A... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002015NSK002015Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02400.1NO11G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591508gene_5135Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100186g7gene5521Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02400.1NO11G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02400 ID=NO11G02400|Name=NO11G02400|organism=Nannochloropsis oceanica|type=gene|length=588bp
ATGGTGGCCGACCTCCCCAAGCAGCCTTCGTCGCAACAAGGTAAGAAAGC
GGAATACGCCGAGTCCTTATTTGACTACCTTTTTGCTGCCATGATTGATA
CGCTGCGTACGGGCGGGGATCAAGGGCCCCGGAACGAGGAGCTGCTGGCA
GAGACAGTGCGTGCTATTGGCTTCGACGTCGGGTATCGCCTGGCGGAATC
CACGGTCCAAGGCCGGGTGCTGCCTGCGGACGCGCTGGAAGTTAACGTGA
TGAAGTTCATTTGCAAGGAGTTCTGGATCGAGATTTTTAAGAAGCAGATT
GACAAGCTGCAGACGAATAATCAAGGGGTCTTTGTTCTGCGCGATTCCAA
ATTTCGGTGGCTCGCCCCATTTACAGCCGATGACGAAGCAACCCGCCGTG
CGGCCGCCACGGTGCTCAATTTTCCTTGTGGTCTCATAAAAGGCGCTTTG
GAAAACTTGGGAATCATATCAACGGTGCAAGCAGAGGTGGCCCCGGCGGT
GCCATCGTGTTCGTTTACCATCAAGATCAAGCGGAGTGGGGGTAGTGCCG
TGAATTCTGCTTATGCGTCGAGCAATAGCAGGACGTAA
back to top

protein sequence of NO11G02400.1

>NO11G02400.1-protein ID=NO11G02400.1-protein|Name=NO11G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MVADLPKQPSSQQGKKAEYAESLFDYLFAAMIDTLRTGGDQGPRNEELLA
ETVRAIGFDVGYRLAESTVQGRVLPADALEVNVMKFICKEFWIEIFKKQI
DKLQTNNQGVFVLRDSKFRWLAPFTADDEATRRAAATVLNFPCGLIKGAL
ENLGIISTVQAEVAPAVPSCSFTIKIKRSGGSAVNSAYASSNSRT*
back to top
Synonyms
Publications