NO11G02330, NO11G02330 (gene) Nannochloropsis oceanica

Overview
NameNO11G02330
Unique NameNO11G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1259
Alignment locationchr11:745843..747101 -

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Properties
Property NameValue
Description30s ribosomal protein s18
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:745843..747101 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR036870Ribosomal_S18_sf
IPR001648Ribosomal_S18
Homology
BLAST of NO11G02330 vs. NCBI_GenBank
Match: EWM24983.1 (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 348.2 bits (892), Expect = 2.700e-92
Identity = 173/255 (67.84%), Postives = 203/255 (79.61%), Query Frame = 0
Query:   66 PFGFRELKAKYKGAR-GGASFPDLRDEDVATMEAEMEKTGRVTAPRNVFGIDHISKEMTQAWEEGMLPPQLYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRGXXXXXXXXXXEEELLKKIPSLTI 320
            PFGFRELKAK+K +  GG   PD+R+ED   +E EMEKTGRVT PRN+FGI HISKEMT+AWEEG+LPPQLYP    +A GLEGP D YWP NLETTLP +SDRLYP+  +R FSPEE++ M EA++GGVC+GK QRRG+QPL CKK+DL E+ F+NVAVLAQF+SP+GMIKPRRMSGLCAKCQRKVART+KQARHLGV+PHT GVDLYQRL+ +GE  G   + P L R+G           EELLK+ PSLTI
Sbjct:   68 PFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYP----RAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKG-DAVEEKEKKREELLKQTPSLTI 317          
BLAST of NO11G02330 vs. NCBI_GenBank
Match: EWM24984.1 (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 239.6 bits (610), Expect = 1.400e-59
Identity = 120/185 (64.86%), Postives = 142/185 (76.76%), Query Frame = 0
Query:  135 LYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRGXXXXXXXXXXEEELLKKIPSLTI 320
            L PP    +   EGP D YWP NLETTLP +SDRLYP+  +R FSPEE++ M EA++GGVC+GK QRRG+QPL CKK+DL E+ F+NVAVLAQF+SP+GMIKPRRMSGLCAKCQRKVART+KQARHLGV+PHT GVDLYQRL+ +GE  G   + P L R+G           EELLK+ PSLTI
Sbjct:   54 LAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKG-DAVEEKEKKREELLKQTPSLTI 237          
BLAST of NO11G02330 vs. NCBI_GenBank
Match: CBJ48787.1 (putative 30S ribosomal protein S18 [Ectocarpus siliculosus])

HSP 1 Score: 73.2 bits (178), Expect = 1.700e-9
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  195 CQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDL 273
            C GKKQ + + P  C+  D+ E+   +  +L +F++  GMI  R  +GLCAKCQRKVA TVK AR +G+VP  S  ++
Sbjct:  278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEV 355          
BLAST of NO11G02330 vs. NCBI_GenBank
Match: CEO94403.1 (hypothetical protein PBRA_000188, partial [Plasmodiophora brassicae])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 0
Query:  120 KEMTQAWEEGMLPPQLYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRC--KKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQG 279
            + MT+ W   M      P +  + P +  PE+L          PR SD     K     SP    ++   D   +C   K   GS+  RC  K    N +  TN+ +L  F++ +GMI P R +G+CAK QRK+ R +K+AR LG++P+ S +   + ++G
Sbjct:  324 RTMTEFWARRMKFQGKLPADPYENPTIL-PEELQ---------PRVSDLDPDKKPAELVSP----DLIIFDACPLCNKPKTGPGSR-ARCWVKPEQANTISHTNIELLNSFVTELGMIMPARKTGMCAKYQRKITRAIKRARQLGLMPYISKLQFGKEIEG 469          
BLAST of NO11G02330 vs. NCBI_GenBank
Match: XP_003082895.2 (Ribosomal protein S18 [Ostreococcus tauri] >CEG02014.1 Ribosomal protein S18 [Ostreococcus tauri])

HSP 1 Score: 64.7 bits (156), Expect = 6.000e-7
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 0
Query:  173 KSDRAFSP---EEMQEMYEADIG--GVCQGKKQRRGSQPLRCKKVD---LNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQR 276
            +SDR F P    E +++  A+ G  G       +    P+R K V+   L    F +   L QF+S  G I P+R  G+ AK QRK++R +K AR +G++P+TS +  +QR
Sbjct:   78 RSDRLFYPGQAYEAEDLAGANAGTRGAAHTVAAKTVKHPMRGKAVEATLLERTSFEDARFLTQFVSDTGKIYPKRRLGVSAKAQRKISRAIKTARQMGILPYTSRLPQFQR 188          
The following BLAST results are available for this feature:
BLAST of NO11G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24983.12.700e-9267.8430s ribosomal protein s18 [Nannochloropsis gaditan... [more]
EWM24984.11.400e-5964.8630s ribosomal protein s18 [Nannochloropsis gaditan... [more]
CBJ48787.11.700e-944.87putative 30S ribosomal protein S18 [Ectocarpus sil... [more]
CEO94403.11.200e-731.06hypothetical protein PBRA_000188, partial [Plasmod... [more]
XP_003082895.26.000e-735.14Ribosomal protein S18 [Ostreococcus tauri] >CEG020... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002021NSK002021Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02330.1NO11G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591485gene_5128Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100122g3gene5516Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02330.1NO11G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02330 ID=NO11G02330|Name=NO11G02330|organism=Nannochloropsis oceanica|type=gene|length=1259bp
ACAGTCGTCATCACGCATGCACCTACTATTACGACGCAGCGCCAGCGCGG
CAGTCACTGTAGCAGGCAGAAACAGCAACAATGCCGCGGTCCGGTGCTTC
ACCGCGGTGGGTGGAACCAGGGGAGGACCCAAGGCAGGGGGAGGCAAGAA
GGACGGCAAGAACGATGGCGGCACAGCAGCAGCAGCCGCGGCCGTGACCA
AGGAGAAAGATCCTTTTGGCTTCAGAGAGCTTAAGGCCAAGTACAAGGGT
GCACGGGGGGGGGCAAGTTTCCCCGACTTGCGGGATGAGGACGTGGCAAC
GATGGAAGCGGAGATGGAAAAAACAGGGAGGGTGACGGCGCCGAGGAACG
TGTTTGGGATAGACCATATCAGCAAGGAGATGACCCAAGCATGGGAGGAA
GGCATGTTACCCCCGCAGTTGTACCCGCCCGAGTCGGCGCAGGCACCCGG
ATTgtaagtgtaggagttgtttgtgtatgtacatatatgatttttcggtt
gccgtttcacctcagatatgctcaccctcctcggcctctcccccctctct
ctatgataatcaccgtatctcactctctctatcatctcttcctccctttc
ttccatcctccctcccccaaaacagGGAAGGCCCAGAGGATCTCTACTGG
CCAGGCAATCTTGAGACCACCCTCCCCCGCGACAGCGACCGCCTCTACCC
GTCCAAATCAGATCGCGCATTCTCCCCAGAAGAAATGCAAGAAATGTACG
AAGCAGACATCGGTGGAGTCTGCCAGGGGAAGAAGCAACGGCGTGGCTCC
CAGCCATTGAGGTGCAAAAAAGTAGATTTGAATGAAGTGGTGTTCACGAA
TGTGGCAGTGTTGGCTCAGTTTTTGTCGCCTGTGGGTATGATTAAGCCTC
GGCGAATGTCTGGATTGTGTGCTAAATGCCAACGAAAGGTGGCGAGGACC
GTGAAGCAAGCAAGACACCTGGGAGTGGTGCCTCATACGAGTGGAGTGGA
TCTGTACCAGCGGCTGCAGGGTGAGGGGGAGAAGGCAGGCGGCTTGGTGA
GGGCGCCGTTGTTGTCGAGGAGAGGAGGGGAGGGAGGAGGAAGGGGTGGG
ATGGCAGAGGAGGAATTACTAAAGAAGATTCCGAGTTTGACAATATAGGC
AGACAAATCGTGAAGTGTTGAGTTTGTCGGGAATGAAGCGAGGGACGGGC
GGAGAATGGGGGAGAATGAAAAGACAAAAGTATCCGCAACAAACGAATTT
AGAAGAGAA
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protein sequence of NO11G02330.1

>NO11G02330.1-protein ID=NO11G02330.1-protein|Name=NO11G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MHLLLRRSASAAVTVAGRNSNNAAVRCFTAVGGTRGGPKAGGGKKDGKND
GGTAAAAAAVTKEKDPFGFRELKAKYKGARGGASFPDLRDEDVATMEAEM
EKTGRVTAPRNVFGIDHISKEMTQAWEEGMLPPQLYPPESAQAPGLEGPE
DLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQ
RRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRK
VARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRGGEGG
GRGGMAEEELLKKIPSLTI*
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Synonyms
Publications