NO11G02330, NO11G02330 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO11G02330 vs. NCBI_GenBank
Match: EWM24983.1 (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 348.2 bits (892), Expect = 2.700e-92 Identity = 173/255 (67.84%), Postives = 203/255 (79.61%), Query Frame = 0 Query: 66 PFGFRELKAKYKGAR-GGASFPDLRDEDVATMEAEMEKTGRVTAPRNVFGIDHISKEMTQAWEEGMLPPQLYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRGXXXXXXXXXXEEELLKKIPSLTI 320 PFGFRELKAK+K + GG PD+R+ED +E EMEKTGRVT PRN+FGI HISKEMT+AWEEG+LPPQLYP +A GLEGP D YWP NLETTLP +SDRLYP+ +R FSPEE++ M EA++GGVC+GK QRRG+QPL CKK+DL E+ F+NVAVLAQF+SP+GMIKPRRMSGLCAKCQRKVART+KQARHLGV+PHT GVDLYQRL+ +GE G + P L R+G EELLK+ PSLTI Sbjct: 68 PFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYP----RAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKG-DAVEEKEKKREELLKQTPSLTI 317
BLAST of NO11G02330 vs. NCBI_GenBank
Match: EWM24984.1 (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 239.6 bits (610), Expect = 1.400e-59 Identity = 120/185 (64.86%), Postives = 142/185 (76.76%), Query Frame = 0 Query: 135 LYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQGEGEKAGGLVRAPLLSRRGXXXXXXXXXXEEELLKKIPSLTI 320 L PP + EGP D YWP NLETTLP +SDRLYP+ +R FSPEE++ M EA++GGVC+GK QRRG+QPL CKK+DL E+ F+NVAVLAQF+SP+GMIKPRRMSGLCAKCQRKVART+KQARHLGV+PHT GVDLYQRL+ +GE G + P L R+G EELLK+ PSLTI Sbjct: 54 LAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKG-DAVEEKEKKREELLKQTPSLTI 237
BLAST of NO11G02330 vs. NCBI_GenBank
Match: CBJ48787.1 (putative 30S ribosomal protein S18 [Ectocarpus siliculosus]) HSP 1 Score: 73.2 bits (178), Expect = 1.700e-9 Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0 Query: 195 CQGKKQRRGSQPLRCKKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDL 273 C GKKQ + + P C+ D+ E+ + +L +F++ GMI R +GLCAKCQRKVA TVK AR +G+VP S ++ Sbjct: 278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEV 355
BLAST of NO11G02330 vs. NCBI_GenBank
Match: CEO94403.1 (hypothetical protein PBRA_000188, partial [Plasmodiophora brassicae]) HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7 Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 0 Query: 120 KEMTQAWEEGMLPPQLYPPESAQAPGLEGPEDLYWPGNLETTLPRDSDRLYPSKSDRAFSPEEMQEMYEADIGGVCQGKKQRRGSQPLRC--KKVDLNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQRLQG 279 + MT+ W M P + + P + PE+L PR SD K SP ++ D +C K GS+ RC K N + TN+ +L F++ +GMI P R +G+CAK QRK+ R +K+AR LG++P+ S + + ++G Sbjct: 324 RTMTEFWARRMKFQGKLPADPYENPTIL-PEELQ---------PRVSDLDPDKKPAELVSP----DLIIFDACPLCNKPKTGPGSR-ARCWVKPEQANTISHTNIELLNSFVTELGMIMPARKTGMCAKYQRKITRAIKRARQLGLMPYISKLQFGKEIEG 469
BLAST of NO11G02330 vs. NCBI_GenBank
Match: XP_003082895.2 (Ribosomal protein S18 [Ostreococcus tauri] >CEG02014.1 Ribosomal protein S18 [Ostreococcus tauri]) HSP 1 Score: 64.7 bits (156), Expect = 6.000e-7 Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 0 Query: 173 KSDRAFSP---EEMQEMYEADIG--GVCQGKKQRRGSQPLRCKKVD---LNEVVFTNVAVLAQFLSPVGMIKPRRMSGLCAKCQRKVARTVKQARHLGVVPHTSGVDLYQR 276 +SDR F P E +++ A+ G G + P+R K V+ L F + L QF+S G I P+R G+ AK QRK++R +K AR +G++P+TS + +QR Sbjct: 78 RSDRLFYPGQAYEAEDLAGANAGTRGAAHTVAAKTVKHPMRGKAVEATLLERTSFEDARFLTQFVSDTGKIYPKRRLGVSAKAQRKISRAIKTARQMGILPYTSRLPQFQR 188 The following BLAST results are available for this feature:
BLAST of NO11G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G02330 ID=NO11G02330|Name=NO11G02330|organism=Nannochloropsis oceanica|type=gene|length=1259bpback to top protein sequence of NO11G02330.1 >NO11G02330.1-protein ID=NO11G02330.1-protein|Name=NO11G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bpback to top Synonyms
Publications
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