NO11G02270, NO11G02270 (gene) Nannochloropsis oceanica

Overview
NameNO11G02270
Unique NameNO11G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr11:733313..735226 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:733313..735226 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002027NSK002027Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02270.1NO11G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591463gene_5121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02270.1NO11G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02270 ID=NO11G02270|Name=NO11G02270|organism=Nannochloropsis oceanica|type=gene|length=1914bp
ATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTAGCAGCCAAGACGACCA
TGAACATCATCCGACCAGCAGCAGCCGGCCCACACACCAATACCAGGACG
ACGACAGCCCACCTGCAGCCACACACAGTACAGCTGACGACAAGTTGGCA
TGGCTGCAACAGAATTTGGGGATGCATATGCTAGATGGTGCCAGTGGCAA
TCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACGGCGATGCCCCACACTC
TCTTGCCCTTGCTGTACAAATTGACGACACAAGTGCGAGCATTTCAGGAG
CAAAATACGGAGCTCATGTTCGATCTGAAAAAGAATCGAGCTGAAGCGGA
GCGACTGATGCAAGAAAGGGCCAGTATGTACGACAAGGTGGATGCCGCCC
ATCAGGACCGACAAGCCGCCGAGAGCATGCTGGCCTCCATGCGGGCCGAG
ACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGAAGAATGAGCTCCATGG
GCGCTTGGCACGTTCAACTTGGAAAGACTTAACCATCCGCGCGCAGCTCA
AGAAGAAGGATATGGAGTACGAGAAGCTTCAGAAGCAATTGACGCGTAGC
ATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCGGCACCGCGCGAGGCAC
GGTGAATCGCGTCCGAAGCATCGACATCACCCCCAAACCGTTGGTATACA
GCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGCCTCTCGGGCGGCGTTG
GCGGCTTGCGACCACCGACAGACCTTGTTGTTGGAGGAGAATGCTGAGCT
TCGGGAGACCCTCAGGTGCATGTATGCAGAGATTCAGGGACTGCAAGATC
AATACGGCGATTTGGTTGAAGAAGTAGAGAGTTGTCGAATCTGGTACCAC
GAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGACCTCGTTGCTTTCACC
ACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCCCCTCAGCCGACGAGCC
GCCGATTCGAAGTGGAGGCATTTGAGATGCCTCCGGAGTGGTTGAGGCGT
GTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTGAAATGCGTCGGCGATA
CGATAGACTGCGGGAGGTGATCATAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAGCATGAGGTGGAGGAGGAGGGAGAGGGAATTGCGTCG
GCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGTTGCAGCGGGAGGTGAG
ACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAGGTGGTGGCGATGCAGG
AAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGACACAGGCCACGAAGGC
GGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGGAGGGAGGGCGTCAACG
CTTGTCCTCTGATTCGTGGATGGCGGACAACGGGCATGTGGATTCCCGGA
CTGTGCAACCAGAGGAGAACGAGCAACAGCAGCCGCGGCTAGAGGAAGAG
GAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGCTAAAAGCAGATTTGAT
AGCATTTGGGATGGAGGACAAGCAACAAGACTCTGTTGGTGGTACTACTG
CTACTTTCGCTGCTTTGGAAGTTACGCCAATCAAGAAGATGGACGCCCAC
GGAGATGGGCAATGGAAGGTGACACGAGCTCCATTGCGGTCTCTGTCGGG
AGGTGGAGGCAACCTGTTATCGCCCATGCTGCAGGCGCGAATTGCGGGCT
TGGACCATGACATGTACAAGCCCAATAGGAACAAAGAAGAGGGTCTGGAT
GGTGGCACGCCGCGGGGACGGTCATCTTTGCAGGCGGCCTTGGGGTTGCT
CAGTCCGATAGAGCATCATGACCCTTTTGGGAATTGTCGCCACCCGGCTA
AAAAGACTCTTTAA
back to top

protein sequence of NO11G02270.1

>NO11G02270.1-protein ID=NO11G02270.1-protein|Name=NO11G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MEFFVPVGKSGSSQDDHEHHPTSSSRPTHQYQDDDSPPAATHSTADDKLA
WLQQNLGMHMLDGASGNLTGAELEAALTAMPHTLLPLLYKLTTQVRAFQE
QNTELMFDLKKNRAEAERLMQERASMYDKVDAAHQDRQAAESMLASMRAE
TAALEKRWSEEKNELHGRLARSTWKDLTIRAQLKKKDMEYEKLQKQLTRS
IGSSSGSKSTTGTARGTVNRVRSIDITPKPLVYSGGSSDLVGDEASRAAL
AACDHRQTLLLEENAELRETLRCMYAEIQGLQDQYGDLVEEVESCRIWYH
EELAKAKGAAGTSLLSPPLKGEEESIFSPQPTSRRFEVEAFEMPPEWLRR
VVGEELRANMAEMRRRYDRLREVIIKQQQQQQQQQQQQHEVEEEGEGIAS
ALRDLTAEKKALQREVRRVQARLYETEEVVAMQEVVIKGALFGEDTGHEG
GSQGGRRPHAGEGGRQRLSSDSWMADNGHVDSRTVQPEENEQQQPRLEEE
ERGTLEEIAEKLKADLIAFGMEDKQQDSVGGTTATFAALEVTPIKKMDAH
GDGQWKVTRAPLRSLSGGGGNLLSPMLQARIAGLDHDMYKPNRNKEEGLD
GGTPRGRSSLQAALGLLSPIEHHDPFGNCRHPAKKTL*
back to top
Synonyms
Publications