NO11G02180, NO11G02180 (gene) Nannochloropsis oceanica

Overview
NameNO11G02180
Unique NameNO11G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr11:703640..704862 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:703640..704862 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO11G02180 vs. NCBI_GenBank
Match: EWM19967.1 (hypothetical protein Naga_102579g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 278.9 bits (712), Expect = 2.100e-71
Identity = 133/198 (67.17%), Postives = 160/198 (80.81%), Query Frame = 0
Query:  135 RDVVPKARGLVSMVYKSHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHTMAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGGVVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMREALEADERCSAWHRRYERMFPPGTTELVRDSL 333
            RDVVPKA+G VSMVYKSH A+Q YH SA+FFLVT+RDPYDMVCSM  MFRP+F TDF +A+ SC  MA NE+RI  L  A+  G+AL VHHSAL++ E M +VVEAMA  W V GG +DARGVAREVLEL++PP G+FPVAHPR+ELHA+HIT S++T++DC  +R ALEAD  C AWH RYE+ FPPGT +LVRDS+
Sbjct:    1 RDVVPKAKGQVSMVYKSHWADQEYHNSADFFLVTHRDPYDMVCSMGNMFRPVFFTDFKRAISSCRGMADNEKRI--LRVASKSGSALHVHHSALYSAESMAQVVEAMALKWNVTGGKIDARGVAREVLELRAPPEGIFPVAHPRTELHADHITASSSTKKDCTELRRALEADSVCRAWHDRYEQSFPPGTAQLVRDSI 196          
BLAST of NO11G02180 vs. NCBI_GenBank
Match: EWM24604.1 (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 256.5 bits (654), Expect = 1.100e-64
Identity = 123/248 (49.60%), Postives = 166/248 (66.94%), Query Frame = 0
Query:   81 PRLAAPLIVACLANMRTVSTTAYNLARVLMERVDPNSASGWEKDVTGTNTDILIRDVVPKARGLVSMVYKSHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHTMAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGGVVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMREALEADERCSAWHRRYERMFPPGTTELV 329
            PRL +PL VACL++ RTVSTTA+NL R+LMERVD NS SGWE DV G+  +  + D++PK  G VS VYKSH     +H+ A+F +VTYRDPY+++CSM +MF+P       +A+  C  MA+NE  I + A   G   +L ++   L + EGMTEVV  +   W VQGG +D R + REV++L+SPP GVF VA+PRSELH +HIT S +T+ DC  ++E L  D+ C AWH  Y  MFP G+  ++
Sbjct:   94 PRLPSPLTVACLSSQRTVSTTAFNLVRILMERVDANSISGWEHDVVGSRPNERLEDILPKVHGKVSTVYKSHAGGAEHHQHADFVVVTYRDPYEIMCSMGRMFQPKIFRSEHKAVEKCRKMARNEAGIKDWAGREGT-RSLHINSDVLKSAEGMTEVVRLLMEKWGVQGGSLDPRSITREVMDLESPPEGVFSVANPRSELHPHHITGSGDTEGDCDVLKEVLAQDQVCRAWHDTYAAMFPEGSPSIL 340          
BLAST of NO11G02180 vs. NCBI_GenBank
Match: EWM24996.1 (hypothetical protein Naga_100068g30, partial [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 3.100e-22
Identity = 73/130 (56.15%), Postives = 88/130 (67.69%), Query Frame = 0
Query:    5 RNWPVNYSASRMVLVLLSLIFGAQLVIIARYEKPSPATTTAAVAGQDV-AAPAAVSLTADASTSSQSSSLDTVDPPLPRLAAPLIVACLANMRTVSTTAYNLARVLMERVDPNSASGWEKDVTGTNTDIL 134
            R W      S  +L LL LIF AQL II        ++++++ AG++  A P   SL   A++ S S ++   DPPLPRL+ PLIVACLANMRTVSTTAYNLARVLMERVDPNS SGWEKDVTG+   IL
Sbjct:    3 RRWASKQKPSSQLLSLLGLIFCAQLYIIFH------SSSSSSCAGKEQHAIPTPASL---AASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDPNSVSGWEKDVTGSKKRIL 123          
BLAST of NO11G02180 vs. NCBI_GenBank
Match: EWM24994.1 (hypothetical protein Naga_101727g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 2.100e-18
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 0
Query:    5 RNWPVNYSASRMVLVLLSLIFGAQLVIIARYEKPSPATTTAAVAGQDVAAPAAVSLTADASTSSQSSSLDTVDPPLPRLAAPLIVACLANMRTVSTTAYNLARVLMERVDPNSASGWEKD 125
            R W      S  +L+LL LIF AQL II        +++++    +  A P   SL   A++ S S ++   DPPLPRL+ PLIVACLANMRTVSTTAYNLARVLMERVD NS SGWEK+
Sbjct:   25 RRWTSKQKPSSQLLLLLGLIFCAQLYIIFH------SSSSSCAGKEQHAIPTPASL---AASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLMERVDSNSVSGWEKN 135          
The following BLAST results are available for this feature:
BLAST of NO11G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM19967.12.100e-7167.17hypothetical protein Naga_102579g1, partial [Nanno... [more]
EWM24604.11.100e-6449.60hypothetical protein Naga_100171g10 [Nannochlorops... [more]
EWM24996.13.100e-2256.15hypothetical protein Naga_100068g30, partial [Nann... [more]
EWM24994.12.100e-1853.33hypothetical protein Naga_101727g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002039NSK002039Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02180.1NO11G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591417gene_5110Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g30gene5500Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02180.1NO11G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02180 ID=NO11G02180|Name=NO11G02180|organism=Nannochloropsis oceanica|type=gene|length=1223bp
ACAGGCGAGGCGCAAGGGGGTACAGAATATCACACGCAAGCAAACACCAA
AACAATTACAATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCAT
CCCGCATGGTGTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTC
ATAATTGCGCGTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGT
GGCAGGTCAAGATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATG
CCTCCACCAGCTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTG
CCACGCTTGGCCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTAC
CGTCTCAACGACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGG
ACCCTAATTCCGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACT
GACATCTTAATTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCAT
GGTGTACAAATCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATT
TCTTCTTGGTGACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCC
AAGATGTTTCGGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTC
TTGCCATACCATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAG
CTGCGGGGCCTGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACA
CTGGAGGGTATGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGT
GCAAGGAGGTGTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGC
TACAGTCACCACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAG
TTACATGCGAACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGC
GCCGATGAGGGAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATA
GGCGATATGAGAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGAC
AGCTTGAAGACACGACGTTGAGATGAAAGAAGGGTGAGGTACGCCTGAGC
TTGGTAGCAATACACTACCTCAGTATGTACGTGTAGGGGTGTTGTCATTT
AACTAGGGGAGCGAAGAAGAAAGGCATTTATGCATATACATATACATTTA
CATATATAAATACACATATAAAC
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protein sequence of NO11G02180.1

>NO11G02180.1-protein ID=NO11G02180.1-protein|Name=NO11G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGRYRNWPVNYSASRMVLVLLSLIFGAQLVIIARYEKPSPATTTAAVAGQ
DVAAPAAVSLTADASTSSQSSSLDTVDPPLPRLAAPLIVACLANMRTVST
TAYNLARVLMERVDPNSASGWEKDVTGTNTDILIRDVVPKARGLVSMVYK
SHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHT
MAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGG
VVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMR
EALEADERCSAWHRRYERMFPPGTTELVRDSLKTRR*
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Synonyms
Publications