NO11G02170, NO11G02170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO11G02170 vs. NCBI_GenBank
Match: EWM25015.1 (dihydrouridine synthase [Nannochloropsis gaditana]) HSP 1 Score: 449.9 bits (1156), Expect = 7.300e-123 Identity = 205/253 (81.03%), Postives = 233/253 (92.09%), Query Frame = 0 Query: 43 DLASHAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMRL 296 DL +H A+AW WYR+MGSP+YVCAPMVDQSELAFRLLCRRYGTQLA+SPMVHAACYLREKRSKRN++FFCNT P+D+PLIVQLCGNDP +LLAAAKEICRI+GVCA+DLNLGCPQGIARKGKYGAFLLHQ DLVV+IVSTL++ LDKPVTCKIRLLP+F +T++LC ALV AGCSLLTVHGRTK+QNKHLVG CDWE IR+IK + +PVFANGGI+DLDDV +C+ T VDGVMSSEALLENPGLFSRN+ + Sbjct: 37 DLEAHVARAWRWYRSMGSPRYVCAPMVDQSELAFRLLCRRYGTQLAFSPMVHAACYLREKRSKRNEVFFCNTNPQDWPLIVQLCGNDPGVLLAAAKEICRIEGVCAVDLNLGCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNV 289
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_004023845.1 (t-diRNAhydrouridine synthase, putative [Ichthyophthirius multifiliis] >EGR26961.1 t-diRNAhydrouridine synthase, putative [Ichthyophthirius multifiliis]) HSP 1 Score: 299.7 bits (766), Expect = 1.200e-77 Identity = 143/240 (59.58%), Postives = 183/240 (76.25%), Query Frame = 0 Query: 52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHA-ACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291 +++Y+++G PQY+CAPMVDQSELAFR+LCR+YGT LAY+PM+ + Y + ++S +N F +T PED PLI Q CGNDPE+LL A K I + A+D+N GCPQGIA+KG YG+FLL + DL+ +V L + LD PVTCKIR++ S + T+ L + AGCS+LTVHGRTK+QNK LVGMCDW++I+ IK+ + IPVFANGGI DV RCME TGVDGVMS+EALLENP LFS Sbjct: 12 YQFYKSIGEPQYICAPMVDQSELAFRMLCRKYGTTLAYTPMISSKVVYDQGEKSLKN---FFSTCPEDRPLIAQFCGNDPEVLLEACKYIQK--DCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMVKKLHEELDIPVTCKIRIIRSREKTLELAKRIENAGCSILTVHGRTKEQNKDLVGMCDWDIIKEIKDTLTIPVFANGGIYTFQDVQRCMEYTGVDGVMSAEALLENPALFS 246
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001031833.1 (tRNA-dihydrouridine synthase [Tetrahymena thermophila SB210] >EAR84170.1 tRNA-dihydrouridine synthase [Tetrahymena thermophila SB210]) HSP 1 Score: 294.7 bits (753), Expect = 3.900e-76 Identity = 137/239 (57.32%), Postives = 181/239 (75.73%), Query Frame = 0 Query: 52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291 + +Y+++GSPQYVCAPMVDQSELAFR+LCR+YGT LAY+PM+H+ + N +F +T ED PL Q CGN+P+ LLA A+ + D AID+N GCPQGIA++G+YG++LL + D +V +V L + L PVTCKIR+LP+ + T+ L + AAGCS+LTVHGRTK+QNK VG+CDW++I+ IKEE+ IPVFANGGI +DV +C+E TGVDGVMS+E+LLENP LFS Sbjct: 63 YNFYKSLGSPQYVCAPMVDQSELAFRMLCRKYGTTLAYTPMIHSKVLQDQGYGYLNSVF--STCQEDRPLFAQFCGNNPDALLAGARYV--EDKCDAIDINFGCPQGIAKRGRYGSYLLSEPDTIVALVKKLHENLSIPVTCKIRILPNRQQTIELAKKIEAAGCSILTVHGRTKEQNKDTVGLCDWDIIKIIKEELSIPVFANGGIYTYEDVQKCLEYTGVDGVMSAESLLENPALFS 297
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001458665.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK91268.1 unnamed protein product [Paramecium tetraurelia]) HSP 1 Score: 288.9 bits (738), Expect = 2.100e-74 Identity = 141/248 (56.85%), Postives = 179/248 (72.18%), Query Frame = 0 Query: 47 HAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMR 295 H QAW++YRN+GSP+++CAPMVDQSELAFR+ R+YGT LAY+PM+H+ + E +S +++ F T PED PL QLCG+DP++++ AA I D AIDLN GCPQGIARKG YGAFLL + + V+ IV L Q + PVTCKIR+ K T+ L + +AGCS+LTVHGRTK+QNK VG CDW +I IK+ + IPVFANGGI DV RC++ T VD VMSSEALLENP LFS ++ Sbjct: 4 HIQQAWQFYRNLGSPKFICAPMVDQSELAFRMQTRKYGTTLAYTPMLHSR-IMTESKSYKDEFF--TTCPEDRPLFAQLCGHDPQVIIKAALMI--QDQCDAIDLNFGCPQGIARKGLYGAFLLEKREQVLTIVKELKQNIKVPVTCKIRVFKDRKRTLDLTKDIQSAGCSILTVHGRTKEQNKDFVGQCDWNIIAEIKQLLQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK 246
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001461620.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK94247.1 unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 288.5 bits (737), Expect = 2.800e-74 Identity = 140/248 (56.45%), Postives = 181/248 (72.98%), Query Frame = 0 Query: 47 HAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMR 295 H QAW++Y+++GSP+++CAPMVDQSELAFR+L R+YGT LAY+PM+H+ + E +S +++ F T PED PL QLCG+DP++L+ AA I D AID+NLGCPQGIARKG YGA+LL + + V+ IV L Q ++ PVTCKIR+ K T+ L + AGCS+LTVHGRTK+QNK VG CDW +I IK+ + IPVFANGGI DV RC++ T VD VMSSEALLENP LFS ++ Sbjct: 4 HIQQAWQFYKSLGSPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSR-IMTESKSYKDEFF--TTCPEDRPLFAQLCGHDPQVLIKAALMI--QDQCDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK 246
BLAST of NO11G02170 vs. NCBI_GenBank
Match: OQR94563.1 (tRNA-dihydrouridine synthase [Thraustotheca clavata]) HSP 1 Score: 287.7 bits (735), Expect = 4.800e-74 Identity = 137/245 (55.92%), Postives = 179/245 (73.06%), Query Frame = 0 Query: 48 AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293 A + W+ Y +G P+ + APMVDQSELA+R+L R+YG L Y+PM+HA + R+ S R + ED PL VQ CGNDP+ +LA+AK + D A+DLNLGCPQGIARKG+YGAFL+H+ D+V +IVSTL+ L PV+CKIRLLP ++DT++ C+ LV AGC L +HGRTK+ NK LV CDWE IRR+++E+ IPVFANGGI ++DDV C+EAT +GVMSSE +LE P LF+ N Sbjct: 8 AMRGWKLYNELGKPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDSSYRASAW--QVVKEDRPLFVQFCGNDPQTVLASAKLV--QDNCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSTNLKVPVSCKIRLLPKYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWESIRRLRKELPIPVFANGGIENVDDVKACLEATEAEGVMSSEGILEWPALFTGN 247
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_012196871.1 (hypothetical protein SPRG_02894 [Saprolegnia parasitica CBS 223.65] >KDO32417.1 hypothetical protein SPRG_02894 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 287.3 bits (734), Expect = 6.200e-74 Identity = 141/263 (53.61%), Postives = 190/263 (72.24%), Query Frame = 0 Query: 32 VPQSAT-SSPTFDLASH-AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293 +P +AT SS T + AA+ W+ Y ++ P+ + APMVDQSELA+R+L R+YG L Y+PM+HA + R+ + R+ + PED PL VQ CGNDP I+L AAK + DG A+DLNLGCPQGIARKG+YGAFL+H+ D+V +IVSTL++ L PV+CKIRLLP ++DT++ C+ LV AGC L +HGRTK+ NK LV CDW+ I+R+++E+ IPVFANGGI + +DV C+ AT +GVMSSE +LE P LF+ N Sbjct: 18 IPSTATMSSSTSSVRERAAARGWKLYNDLQQPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDTTYRSTAW--QVVPEDRPLFVQFCGNDPAIVLEAAKHV--QDGCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSRELTVPVSCKIRLLPDYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDSIKRLRKELPIPVFANGGIENDEDVAACLAATEAEGVMSSEGILEFPALFTGN 275
BLAST of NO11G02170 vs. NCBI_GenBank
Match: CBN77406.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 285.4 bits (729), Expect = 2.400e-73 Identity = 139/243 (57.20%), Postives = 180/243 (74.07%), Query Frame = 0 Query: 52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVC-AIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNM 294 +E+YR++GSP + APMVDQSELAFR LCRRYG+ L Y+PM ++ C+ ++++ + PED PLIVQ CG+DP +LLA+AK ++ C AIDLNLGCPQGIARKG+YGAFLL + L+ IVSTLA+ L PVTCK+RLL S +DT+++C LVAAG ++TVHGRTK+Q C+W+ IRRIKE + +PVF+NG IS L+DV RC+ TG DGVMSSE +LE PGLFS N+ Sbjct: 77 YEFYRSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNF---DPHPEDRPLIVQFCGHDPALLLASAK---FVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNV 313
BLAST of NO11G02170 vs. NCBI_GenBank
Match: OQS00413.1 (tRNA-dihydrouridine synthase [Achlya hypogyna]) HSP 1 Score: 283.9 bits (725), Expect = 6.900e-73 Identity = 135/258 (52.33%), Postives = 187/258 (72.48%), Query Frame = 0 Query: 36 ATSSPTFDLASH-AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293 ++S+P + AA+ WE YR++G P+ + APMVDQSELA+R+L R+YG L Y+PM+HA + R+ + R + PED PL VQ CGNDP+ILL +A+ + D A+DLNLGCPQGIARKG+YGAFL+H+ ++V +IV TL++ L PV+CKIRL P+++DT++ C+ LV AGC L +HGRTK+ NK LV CDW+ I+R+++E+ IPVFANGGI + DV+ C+ AT +GVMSSE +LE P LF+ N Sbjct: 25 SSSAPALSVRERAAARGWELYRSLGEPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDATYRATAW--QVVPEDRPLFVQFCGNDPDILLTSARYV--QDNCDAVDLNLGCPQGIARKGRYGAFLMHEPEVVREIVETLSRELTVPVSCKIRLFPNYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDTIKRLRKELPIPVFANGGIENDADVVACLAATEAEGVMSSEGILECPALFTGN 277
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_013759372.1 (hypothetical protein AMSG_02453 [Thecamonas trahens ATCC 50062] >KNC47435.1 hypothetical protein AMSG_02453 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 283.1 bits (723), Expect = 1.200e-72 Identity = 137/247 (55.47%), Postives = 182/247 (73.68%), Query Frame = 0 Query: 45 ASHAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPS-FKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291 +SH A AW++YR++GSP+Y+ APMV+ SELAFRLL RRYG +L +PM+++A ++R + + ++ P D PL+ Q CGNDP+ILL AA ++ D V +D+NLGCPQ IAR+G YGAFLL +T+L+V++V TLA+GL PVTCKIR+L S DT++LC AL AGCS+LTVHGRT+ K L+G CDW I+ IKE + IPVFANGGI +D+ CM AT VDGVM SEA+LE P +F+ Sbjct: 3 SSHIASAWKFYRSLGSPKYIVAPMVNASELAFRLLTRRYGAELCVTPMLNSAVWVRSEEYREKNL---RVAPGDEPLLAQFCGNDPKILLEAALDV--QDRVAGVDINLGCPQNIARRGHYGAFLLEETELLVEMVDTLARGLTVPVTCKIRVLESGVDDTIALCLALQDAGCSILTVHGRTRRMKKDLIGPCDWGAIKAIKEAVDIPVFANGGIECFEDIDECMRATCVDGVMLSEAILERPDIFA 244 The following BLAST results are available for this feature:
BLAST of NO11G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G02170 ID=NO11G02170|Name=NO11G02170|organism=Nannochloropsis oceanica|type=gene|length=1878bpback to top protein sequence of NO11G02170.1 >NO11G02170.1-protein ID=NO11G02170.1-protein|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bpback to top Synonyms
Publications
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