NO11G02170, NO11G02170 (gene) Nannochloropsis oceanica

Overview
NameNO11G02170
Unique NameNO11G02170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1878
Alignment locationchr11:701587..703464 -

Link to JBrowse

Properties
Property NameValue
DescriptionDihydrouridine synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:701587..703464 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
Homology
BLAST of NO11G02170 vs. NCBI_GenBank
Match: EWM25015.1 (dihydrouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 449.9 bits (1156), Expect = 7.300e-123
Identity = 205/253 (81.03%), Postives = 233/253 (92.09%), Query Frame = 0
Query:   43 DLASHAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMRL 296
            DL +H A+AW WYR+MGSP+YVCAPMVDQSELAFRLLCRRYGTQLA+SPMVHAACYLREKRSKRN++FFCNT P+D+PLIVQLCGNDP +LLAAAKEICRI+GVCA+DLNLGCPQGIARKGKYGAFLLHQ DLVV+IVSTL++ LDKPVTCKIRLLP+F +T++LC ALV AGCSLLTVHGRTK+QNKHLVG CDWE IR+IK  + +PVFANGGI+DLDDV +C+  T VDGVMSSEALLENPGLFSRN+ +
Sbjct:   37 DLEAHVARAWRWYRSMGSPRYVCAPMVDQSELAFRLLCRRYGTQLAFSPMVHAACYLREKRSKRNEVFFCNTNPQDWPLIVQLCGNDPGVLLAAAKEICRIEGVCAVDLNLGCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNV 289          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_004023845.1 (t-diRNAhydrouridine synthase, putative [Ichthyophthirius multifiliis] >EGR26961.1 t-diRNAhydrouridine synthase, putative [Ichthyophthirius multifiliis])

HSP 1 Score: 299.7 bits (766), Expect = 1.200e-77
Identity = 143/240 (59.58%), Postives = 183/240 (76.25%), Query Frame = 0
Query:   52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHA-ACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291
            +++Y+++G PQY+CAPMVDQSELAFR+LCR+YGT LAY+PM+ +   Y + ++S +N   F +T PED PLI Q CGNDPE+LL A K I +     A+D+N GCPQGIA+KG YG+FLL + DL+  +V  L + LD PVTCKIR++ S + T+ L   +  AGCS+LTVHGRTK+QNK LVGMCDW++I+ IK+ + IPVFANGGI    DV RCME TGVDGVMS+EALLENP LFS
Sbjct:   12 YQFYKSIGEPQYICAPMVDQSELAFRMLCRKYGTTLAYTPMISSKVVYDQGEKSLKN---FFSTCPEDRPLIAQFCGNDPEVLLEACKYIQK--DCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMVKKLHEELDIPVTCKIRIIRSREKTLELAKRIENAGCSILTVHGRTKEQNKDLVGMCDWDIIKEIKDTLTIPVFANGGIYTFQDVQRCMEYTGVDGVMSAEALLENPALFS 246          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001031833.1 (tRNA-dihydrouridine synthase [Tetrahymena thermophila SB210] >EAR84170.1 tRNA-dihydrouridine synthase [Tetrahymena thermophila SB210])

HSP 1 Score: 294.7 bits (753), Expect = 3.900e-76
Identity = 137/239 (57.32%), Postives = 181/239 (75.73%), Query Frame = 0
Query:   52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291
            + +Y+++GSPQYVCAPMVDQSELAFR+LCR+YGT LAY+PM+H+     +     N +F  +T  ED PL  Q CGN+P+ LLA A+ +   D   AID+N GCPQGIA++G+YG++LL + D +V +V  L + L  PVTCKIR+LP+ + T+ L   + AAGCS+LTVHGRTK+QNK  VG+CDW++I+ IKEE+ IPVFANGGI   +DV +C+E TGVDGVMS+E+LLENP LFS
Sbjct:   63 YNFYKSLGSPQYVCAPMVDQSELAFRMLCRKYGTTLAYTPMIHSKVLQDQGYGYLNSVF--STCQEDRPLFAQFCGNNPDALLAGARYV--EDKCDAIDINFGCPQGIAKRGRYGSYLLSEPDTIVALVKKLHENLSIPVTCKIRILPNRQQTIELAKKIEAAGCSILTVHGRTKEQNKDTVGLCDWDIIKIIKEELSIPVFANGGIYTYEDVQKCLEYTGVDGVMSAESLLENPALFS 297          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001458665.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK91268.1 unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 288.9 bits (738), Expect = 2.100e-74
Identity = 141/248 (56.85%), Postives = 179/248 (72.18%), Query Frame = 0
Query:   47 HAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMR 295
            H  QAW++YRN+GSP+++CAPMVDQSELAFR+  R+YGT LAY+PM+H+   + E +S +++ F   T PED PL  QLCG+DP++++ AA  I   D   AIDLN GCPQGIARKG YGAFLL + + V+ IV  L Q +  PVTCKIR+    K T+ L   + +AGCS+LTVHGRTK+QNK  VG CDW +I  IK+ + IPVFANGGI    DV RC++ T VD VMSSEALLENP LFS  ++
Sbjct:    4 HIQQAWQFYRNLGSPKFICAPMVDQSELAFRMQTRKYGTTLAYTPMLHSR-IMTESKSYKDEFF--TTCPEDRPLFAQLCGHDPQVIIKAALMI--QDQCDAIDLNFGCPQGIARKGLYGAFLLEKREQVLTIVKELKQNIKVPVTCKIRVFKDRKRTLDLTKDIQSAGCSILTVHGRTKEQNKDFVGQCDWNIIAEIKQLLQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK 246          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_001461620.1 (hypothetical protein [Paramecium tetraurelia strain d4-2] >CAK94247.1 unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 288.5 bits (737), Expect = 2.800e-74
Identity = 140/248 (56.45%), Postives = 181/248 (72.98%), Query Frame = 0
Query:   47 HAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMR 295
            H  QAW++Y+++GSP+++CAPMVDQSELAFR+L R+YGT LAY+PM+H+   + E +S +++ F   T PED PL  QLCG+DP++L+ AA  I   D   AID+NLGCPQGIARKG YGA+LL + + V+ IV  L Q ++ PVTCKIR+    K T+ L   +  AGCS+LTVHGRTK+QNK  VG CDW +I  IK+ + IPVFANGGI    DV RC++ T VD VMSSEALLENP LFS  ++
Sbjct:    4 HIQQAWQFYKSLGSPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSR-IMTESKSYKDEFF--TTCPEDRPLFAQLCGHDPQVLIKAALMI--QDQCDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDWTIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIK 246          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: OQR94563.1 (tRNA-dihydrouridine synthase [Thraustotheca clavata])

HSP 1 Score: 287.7 bits (735), Expect = 4.800e-74
Identity = 137/245 (55.92%), Postives = 179/245 (73.06%), Query Frame = 0
Query:   48 AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293
            A + W+ Y  +G P+ + APMVDQSELA+R+L R+YG  L Y+PM+HA  + R+  S R   +      ED PL VQ CGNDP+ +LA+AK +   D   A+DLNLGCPQGIARKG+YGAFL+H+ D+V +IVSTL+  L  PV+CKIRLLP ++DT++ C+ LV AGC  L +HGRTK+ NK LV  CDWE IRR+++E+ IPVFANGGI ++DDV  C+EAT  +GVMSSE +LE P LF+ N
Sbjct:    8 AMRGWKLYNELGKPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDSSYRASAW--QVVKEDRPLFVQFCGNDPQTVLASAKLV--QDNCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSTNLKVPVSCKIRLLPKYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWESIRRLRKELPIPVFANGGIENVDDVKACLEATEAEGVMSSEGILEWPALFTGN 247          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_012196871.1 (hypothetical protein SPRG_02894 [Saprolegnia parasitica CBS 223.65] >KDO32417.1 hypothetical protein SPRG_02894 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 287.3 bits (734), Expect = 6.200e-74
Identity = 141/263 (53.61%), Postives = 190/263 (72.24%), Query Frame = 0
Query:   32 VPQSAT-SSPTFDLASH-AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293
            +P +AT SS T  +    AA+ W+ Y ++  P+ + APMVDQSELA+R+L R+YG  L Y+PM+HA  + R+  + R+  +     PED PL VQ CGNDP I+L AAK +   DG  A+DLNLGCPQGIARKG+YGAFL+H+ D+V +IVSTL++ L  PV+CKIRLLP ++DT++ C+ LV AGC  L +HGRTK+ NK LV  CDW+ I+R+++E+ IPVFANGGI + +DV  C+ AT  +GVMSSE +LE P LF+ N
Sbjct:   18 IPSTATMSSSTSSVRERAAARGWKLYNDLQQPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDTTYRSTAW--QVVPEDRPLFVQFCGNDPAIVLEAAKHV--QDGCDAVDLNLGCPQGIARKGRYGAFLMHEPDVVREIVSTLSRELTVPVSCKIRLLPDYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDSIKRLRKELPIPVFANGGIENDEDVAACLAATEAEGVMSSEGILEFPALFTGN 275          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: CBN77406.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 285.4 bits (729), Expect = 2.400e-73
Identity = 139/243 (57.20%), Postives = 180/243 (74.07%), Query Frame = 0
Query:   52 WEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVC-AIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNM 294
            +E+YR++GSP  + APMVDQSELAFR LCRRYG+ L Y+PM ++ C+      ++++    +  PED PLIVQ CG+DP +LLA+AK    ++  C AIDLNLGCPQGIARKG+YGAFLL +  L+  IVSTLA+ L  PVTCK+RLL S +DT+++C  LVAAG  ++TVHGRTK+Q       C+W+ IRRIKE + +PVF+NG IS L+DV RC+  TG DGVMSSE +LE PGLFS N+
Sbjct:   77 YEFYRSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNF---DPHPEDRPLIVQFCGHDPALLLASAK---FVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNV 313          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: OQS00413.1 (tRNA-dihydrouridine synthase [Achlya hypogyna])

HSP 1 Score: 283.9 bits (725), Expect = 6.900e-73
Identity = 135/258 (52.33%), Postives = 187/258 (72.48%), Query Frame = 0
Query:   36 ATSSPTFDLASH-AAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRN 293
            ++S+P   +    AA+ WE YR++G P+ + APMVDQSELA+R+L R+YG  L Y+PM+HA  + R+  + R   +     PED PL VQ CGNDP+ILL +A+ +   D   A+DLNLGCPQGIARKG+YGAFL+H+ ++V +IV TL++ L  PV+CKIRL P+++DT++ C+ LV AGC  L +HGRTK+ NK LV  CDW+ I+R+++E+ IPVFANGGI +  DV+ C+ AT  +GVMSSE +LE P LF+ N
Sbjct:   25 SSSAPALSVRERAAARGWELYRSLGEPKTILAPMVDQSELAYRMLVRKYGVDLCYTPMIHARMF-RDDATYRATAW--QVVPEDRPLFVQFCGNDPDILLTSARYV--QDNCDAVDLNLGCPQGIARKGRYGAFLMHEPEVVREIVETLSRELTVPVSCKIRLFPNYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDTIKRLRKELPIPVFANGGIENDADVVACLAATEAEGVMSSEGILECPALFTGN 277          
BLAST of NO11G02170 vs. NCBI_GenBank
Match: XP_013759372.1 (hypothetical protein AMSG_02453 [Thecamonas trahens ATCC 50062] >KNC47435.1 hypothetical protein AMSG_02453 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 283.1 bits (723), Expect = 1.200e-72
Identity = 137/247 (55.47%), Postives = 182/247 (73.68%), Query Frame = 0
Query:   45 ASHAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPS-FKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFS 291
            +SH A AW++YR++GSP+Y+ APMV+ SELAFRLL RRYG +L  +PM+++A ++R +  +  ++      P D PL+ Q CGNDP+ILL AA ++   D V  +D+NLGCPQ IAR+G YGAFLL +T+L+V++V TLA+GL  PVTCKIR+L S   DT++LC AL  AGCS+LTVHGRT+   K L+G CDW  I+ IKE + IPVFANGGI   +D+  CM AT VDGVM SEA+LE P +F+
Sbjct:    3 SSHIASAWKFYRSLGSPKYIVAPMVNASELAFRLLTRRYGAELCVTPMLNSAVWVRSEEYREKNL---RVAPGDEPLLAQFCGNDPKILLEAALDV--QDRVAGVDINLGCPQNIARRGHYGAFLLEETELLVEMVDTLARGLTVPVTCKIRVLESGVDDTIALCLALQDAGCSILTVHGRTRRMKKDLIGPCDWGAIKAIKEAVDIPVFANGGIECFEDIDECMRATCVDGVMLSEAILERPDIFA 244          
The following BLAST results are available for this feature:
BLAST of NO11G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25015.17.300e-12381.03dihydrouridine synthase [Nannochloropsis gaditana][more]
XP_004023845.11.200e-7759.58t-diRNAhydrouridine synthase, putative [Ichthyopht... [more]
XP_001031833.13.900e-7657.32tRNA-dihydrouridine synthase [Tetrahymena thermoph... [more]
XP_001458665.12.100e-7456.85hypothetical protein [Paramecium tetraurelia strai... [more]
XP_001461620.12.800e-7456.45hypothetical protein [Paramecium tetraurelia strai... [more]
OQR94563.14.800e-7455.92tRNA-dihydrouridine synthase [Thraustotheca clavat... [more]
XP_012196871.16.200e-7453.61hypothetical protein SPRG_02894 [Saprolegnia paras... [more]
CBN77406.12.400e-7357.20conserved unknown protein [Ectocarpus siliculosus][more]
OQS00413.16.900e-7352.33tRNA-dihydrouridine synthase [Achlya hypogyna][more]
XP_013759372.11.200e-7255.47hypothetical protein AMSG_02453 [Thecamonas trahen... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002041NSK002041Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02170.1NO11G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556024gene_5109Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g29gene5499Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02170.1NO11G02170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02170 ID=NO11G02170|Name=NO11G02170|organism=Nannochloropsis oceanica|type=gene|length=1878bp
CAGCTCTCCGCCTCCTGGCTGTCTCTACACTTCGTTTATGCCGTTTTCTC
ATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACAGA
TATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCCCC
AATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCCAG
GCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCCCC
CATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGgtacgtga
tggagagaggggtcgacttataggggcggaatagcagatgtggaagaaag
ggatagtggttgagaggctatactacgtgtacgtatgtatgtgacagaat
gatgtctgtgagtatgtacgatgtgtatgtatgtatatttgtgtattata
ttgatatatattgtacaaatatatgtatattatattgtgtattgtactgt
atgtattgtgtattatgtgtattatgtatgtgtgtctcgccctcatcctt
accacgcagcccccaagggtacaataggcaccctaaactcaatcagagtg
cactctcaacatcccttgactgcatctcatcctctccttcccttcccttc
ccccaaacagTCGCTACGGCACCCAACTCGCCTACTCCCCCATGGTTCAC
GCTGCCTGCTACCTTCGTGAAAAACGGAGCAAGCGAAACGATATTTTTTT
CTGCAACACCACTCCTGAAGACTATCCCCTCATCGTCCAGCTATGTGGAA
ATGATCCTGAAATTCTCTTGGCTGCTGCCAAGGAAATTTGCCGCATCGAC
GGCGTGTGCGCGATCGACCTAAATCTCGGCTGCCCCCAAGGAATAGCTCG
CAAGGGTAAATACGGCGCGTTTTTACTGCACCAGACTGATTTGGTCGTGA
AAATTGTTTCTACTCTGGCTCAGGGGCTGGATAAACCCGTGACGTGTAAA
ATTCGTTTATTGCCTTCTTTTAAGGATACGATGTCGTTGTGCCATGCCCT
GGTAGCGGCAGGTTGTTCCCTTTTGACGGTGCATGGGCGAACCAAGGATC
AGAACAAACATTTGGTGGGCATGTGCGATTGGGAGATGATTAGGCGGATA
AAGGAAGAGATGGTGATTCCGGTGTTCGCGAACGGTGGGATTAGTGACTT
GGATGATGTGCTGAGGTGTATGGAGGCCACGGGAGTGGACGGGGTCATGA
GCTCTGAAGCGCTTTTGGAAAATCCGGGGCTGTTCTCGAGGAATATGAGG
TTAAGTAAGCAAGGAGAGAAAGTAAAGGAGGTGTATAGACCTGGGGGGGG
GAGAAGAGGGAAGAAAAGAAGAGAGGGAAGGAAGGCAACGATCGCCGCCG
ACAGCAACAGGAAGAGGAACGCAGCCTCCGCCGATCTAATCAATTGGATC
TCGCTGAGGAATACTTGCAAATAGTCGATCAACACCCCCCCGAGAGGCTC
AAATGCGTCCGAGCCCATGTCTTCAAAATGGCATTCACGGGCGTGCAGCT
CTACGAGGATTTAAGGGATAATTTGGTGGTGGCGGAGACAGTGGAGGAAA
TAAAGGAAGTGGTCAGAGAGATAAGGAGGAGAGCCGTGGAGGAAGGGAGG
GAGGAAGGGGTGGGAGAACGATCGTGGTATTGGCGACATTGGACAGAGGA
GAAGGATGGGGGAGGAGAGAGTGGGGTGTTGGAAGTGGTGGAGCACGACG
GTGTGGGGGAGGAGGGGTTCGATGGCATGGGCTGTCTTTTCGGAGGCGAG
GAGGGAGATTGAAGAGGTAGAGGAGAGGGGAAAAGGAGAATGTGAAGAAA
GAAAGAAAGTACAAACACGCTGCTAGGT
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protein sequence of NO11G02170.1

>NO11G02170.1-protein ID=NO11G02170.1-protein|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPLSSVLLAPSALKHTDMTAPDPASEHTAGGVPQSATSSPTFDLASHAAQ
AWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLR
EKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAID
LNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPS
FKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVI
PVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMRLSKQGE
KVKEVYRPGGGRRGKKRREGRKATIAADSNRKRNAASADLINWISLRNTC
K*
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Synonyms
Publications