NO11G02120, NO11G02120 (gene) Nannochloropsis oceanica

Overview
NameNO11G02120
Unique NameNO11G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr11:684530..685555 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:684530..685555 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0006260DNA replication
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR013970Rfa2
Homology
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BLAST of NO11G02120 vs. NCBI_GenBank
Match: XP_009822584.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV87721.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 70.1 bits (170), Expect = 5.900e-9
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0 
Query:   30 APRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDG-MEEIMSYDLGDCFDMGNYQQLLTFSMGQYRPLF 131
            APRV+ A + QF G  V +VG +E      AVL    +  + VH +  PG  Y++ +VEV+G V  DG ++E      GD FD+ NY +L+  + G++ PLF
Sbjct:    7 APRVNKAIMAQFVGHTVSLVGSIESWTGSQAVLKTSDNGFVTVHPQ--PGADYSSKFVEVIGAVQSDGTLKEFKCTSFGDDFDLTNYDKLVQLTHGKFSPLF 106
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BLAST of NO11G02120 vs. NCBI_GenBank
Match: CCA17220.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA23695.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-8
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 0 
Query:   29 SAPRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDG-MEEIMSYDLGDCFDMGNYQQLLTFSMGQYRPLF 131
            +APRV+   +R F G+ V +VG VE  N P AV+    D  M V+V+  PG+ Y + YVEV+GRV  +G +EE      G+ FDM  Y Q++  +  ++R LF
Sbjct:    5 TAPRVNQKLLRNFIGKTVALVGNVEHHN-PTAVVLRSSD-GMTVNVQPKPGSDYGSKYVEVIGRVLENGTIEEFKVTLFGEKFDMETYNQMVELAHTEFRHLF 105
[Close]
BLAST of NO11G02120 vs. NCBI_GenBank
Match: XP_008861586.1 (hypothetical protein H310_00545 [Aphanomyces invadans] >ETW10175.1 hypothetical protein H310_00545 [Aphanomyces invadans])

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-8
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 
Query:   30 APRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDG-MEEIMSYDLGDCFDMGNYQQLLTFSMGQYRPLF 131
            APRV+ A + QF G  V +VG +E      AVL    +  + VH +  PG  Y++ YVEV+G V  DG ++E      GD FD+ NY +L+    G+Y  LF
Sbjct:    7 APRVNKAILAQFVGHTVSLVGSIESWTGSQAVLKTSDNGFVTVHPQ--PGADYSSKYVEVIGSVQPDGSLKEFKCTSFGDDFDLKNYDKLVQLIHGKYSTLF 106
[Close]
BLAST of NO11G02120 vs. NCBI_GenBank
Match: OQS07623.1 (hypothetical protein THRCLA_20108 [Thraustotheca clavata])

HSP 1 Score: 67.8 bits (164), Expect = 2.900e-8
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = 0 
Query:   30 APRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDG-MEEIMSYDLGDCFDMGNYQQLLTFSMGQYRPLF 131
            APRV+ A +  +  + V +VG +E      AV+       + VH   +PG  Y++ YVEV+G+V HDG ++E      GD FDM NY +L+    G++ P+F
Sbjct:    7 APRVNKATMVNYINRTVALVGSMESWTGSNAVIKSSDGGLVTVH--PSPGADYSSKYVEVIGQVQHDGSIQEFKCTSFGDDFDMANYDKLVMLIHGKFAPMF 106
[Close]
BLAST of NO11G02120 vs. NCBI_GenBank
Match: XP_012198082.1 (hypothetical protein SPRG_04105 [Saprolegnia parasitica CBS 223.65] >KDO31491.1 hypothetical protein SPRG_04105 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.2 bits (152), Expect = 7.200e-7
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 0 
Query:   30 APRVDAADIRQFQGQVVRIVGKVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDG-MEEIMSYDLGDCFDMGNYQQLLTFSMGQYRPLF 131
            APRV+ A +  +  + V +VG +E      A++    D  + V V  APG  Y++ ++EV+G V  DG ++E      GD FD+GNY +L+T   G++ P+F
Sbjct:    7 APRVNKALMASYVNRTVALVGSMESWTGNSAIIKAS-DGGL-VTVIPAPGADYSSKFIEVIGLVQPDGSLQEFKCTSFGDNFDLGNYDKLVTLMHGKFAPMF 106
The following BLAST results are available for this feature:
BLAST of NO11G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009822584.15.900e-938.24hypothetical protein, variant [Aphanomyces astaci]... [more]
CCA17220.11.300e-840.78conserved hypothetical protein [Albugo laibachii N... [more]
XP_008861586.11.300e-839.22hypothetical protein H310_00545 [Aphanomyces invad... [more]
OQS07623.12.900e-836.27hypothetical protein THRCLA_20108 [Thraustotheca c... [more]
XP_012198082.17.200e-735.29hypothetical protein SPRG_04105 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002046NSK002046Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02120.1NO11G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591394gene_5103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02120.1NO11G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02120 ID=NO11G02120|Name=NO11G02120|organism=Nannochloropsis oceanica|type=gene|length=1026bp
GCACAGTACAATTAAAACACCTGTAAGGTGGTGTGGTGGGGATGAGAAGA
ACCATGAGGGCGAGTAGGTTGCGTTGCGAAAGGGTTGAGCAAGCCATATC
ATTATAGAGACAGAGGCCGGGCACAGCCCGCCTTAACGTTCGGAGTCGTC
GGGGAAGTGCTTCTTCTTCTGCTTGAGCCTTTCACACCTTACCTATCCAC
GACAACACATAGAACTTAGGCAGCTTGATCTGCCCTACCTCTTGGTTGTT
GCTGGAAAGCCCCTGCGAGCTTTCTCCTTCCTCTGTCCTCATCGAGCAGA
CATTACGACCCTGGAGCACGACGTGTAAAGAAGAGCGCGAAGTGCCTTGT
TCTTCATGCACCGCCTAAAAGACCTCATCCAGCAAGGCACAAGCTCCACT
GCCTCAAgtacgcgcgctgccggtcctcgtccctctaccacctatttcat
tcacgtatccctcctcttccctcatatacaaacagAAACTTCTCCCAAAA
TGGAGCAGCAACTGCTAAGCGCGCCCCGAGTAGACGCTGCGGACATTCGC
CAATTCCAGGGCCAGGTGGTGCGCATCGTGGGAAAGGTAGAGCAAGGTAA
TCACCCCGTGGCGGTGTTGGCGTGTGGGCCGGACACTTCGATGCGCGTGC
ACGTCAAGATGGCCCCCGGGAATCAGTACAACACCGCCTACGTAGAGGTC
ATGGGGCGGGTAAACCATGATGGGATGGAGGAGATTATGAGCTATGATTT
GGGGGATTGCTTTGACATGGGCAATTATCAGCAGCTTCTGACATTCAGTA
TGGGGCAGTACCGTCCGCTCTTTGCGTAGACCAGGAAAGAGCAGGGAATG
AGGGAGATGAGGAGGGAAGGAGGGAGGGGAAGGGTTTGAAGAAGAAATGA
CACGCACATACATTTACGCAAGCACGAGGTAGACAAAGCAAGGATAAGTA
GATGCATGCTTATAGTGTCGTGTCAGGAACTGTAGAGTGAACACAAAAGC
AAAAAAAATGACGGGCCATGTTGGAA
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protein sequence of NO11G02120.1

>NO11G02120.1-protein ID=NO11G02120.1-protein|Name=NO11G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MHRLKDLIQQGTSSTASKTSPKMEQQLLSAPRVDAADIRQFQGQVVRIVG
KVEQGNHPVAVLACGPDTSMRVHVKMAPGNQYNTAYVEVMGRVNHDGMEE
IMSYDLGDCFDMGNYQQLLTFSMGQYRPLFA*
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Synonyms
Publications