NO11G02100, NO11G02100 (gene) Nannochloropsis oceanica

Overview
NameNO11G02100
Unique NameNO11G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3675
Alignment locationchr11:676445..681044 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:676445..681044 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02100 vs. NCBI_GenBank
Match: EWM25014.1 (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana])

HSP 1 Score: 624.8 bits (1610), Expect = 2.400e-175
Identity = 327/454 (72.03%), Postives = 350/454 (77.09%), Query Frame = 0 
Query:   71 KIQAEKLLVSIPTDSLDTSSIIASDPADAHRLALTAANAASVA-----SHGEVGEEEGDEGLRLIINQQVALVPSQTSAVLSQNQESRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVLGSPVLMEGEKSDGRVDYSPKNYHIECKRCAKRFLGKNALRNFELHAIFWALYRAHPAIARAG---------XXXXXXXXXXXXXXXXXNEGK-----DMP------SGLEGPXXXXXXXXXXXXAVKAAAQVLGEHHQLNYPCNSVSRDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQGRAWLQIPAGKTWECCKLADPNSTQNVLWCRGGKALEAYETLRSHIFSWHDSGVFTACRHCNRVYQNTRAFLSHGCVKKSPAGLLDDPYKDDTAVASCSQSMWSFLEVSPDFAQLFYQLQSLPTDRKEEVFDRVSKRLKST 500
            KIQAEKLLVSIPT+SLD SS+IASDPA A RLALTAA AAS++     S GE        G R IINQQVALVPSQTS +LSQNQESR+KNLEKIPPEAVRALEATLSAIPAWGVRITKEKLE LG  VLGSPVLMEGE+S+  VDY+PKNYHI+C+ C K FLGKNALRNFELHAIFW LYR+HPAI R G                          N G      DMP       GL               AV+AAAQV   HHQLNYPCNSV+RDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQ RAWLQIPA KTWE CKLADP S Q+VLWCRGGKALEAYETLRSHIF+WHDSGVFT+C HC RVYQNTRAFL HGCVKKSP G+  D  KDDTAVASCSQSM SFLEVSPDFAQLFYQL+SLP++R+EEVFDRVSKRL+ST
Sbjct:  281 KIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEXXXXXXXAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRST 734
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BLAST of NO11G02100 vs. NCBI_GenBank
Match: EWM23237.1 (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 1.900e-44
Identity = 105/219 (47.95%), Postives = 133/219 (60.73%), Query Frame = 0 
Query:  152 SRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVL--GSPVLMEGEKSDGRVDYSPKNYHIECKRCAKRFLGKNALRNFELHAIFWALYRAHPAIARAGXXXXXXXXXXXXXXXXXNEGKDMPSGLEGPXXXXXXXXXXXXAVKAAAQVLGEHHQLNYPCNSVSRDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQGRAWLQIPAG 369
            SR K L ++P   ++AL+  LS +PAW  RITKEKLE LG VV+   SPVL    ++D    Y+PK++HI+C+ C K F GKNALRNFELHAIFW LY AHPA+                          +PS                   +A ++V  EH  L YPCNS++RDVVV+ME+RKPVLCNNQ+K++ L+G L HDT+ FQGRAWLQIP G
Sbjct:  320 SRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALL-------------------------LPS------------------TQADSKVEKEHGGL-YPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIPNG 494
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BLAST of NO11G02100 vs. NCBI_GenBank
Match: XP_005855705.1 (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >EKU20657.1 hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 0 
Query:  147 SQNQESRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVL--GSPVLMEGEKSDGRVDYSPKNYHIECKR 224
            +Q QE R+ NLEK       AL+  LS +PAW  RITKEKLE LG VV+   SPVL    ++D    Y+PK++HI+ KR
Sbjct:  324 TQAQELRLSNLEK-------ALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKQKR 395
The following BLAST results are available for this feature:
BLAST of NO11G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25014.12.400e-17572.03hypothetical protein Naga_100068g20 [Nannochlorops... [more]
EWM23237.11.900e-4447.95hypothetical protein Naga_100917g1 [Nannochloropsi... [more]
XP_005855705.12.500e-749.37hypothetical protein NGA_0645600, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002048NSK002048Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02100.1NO11G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G02100.2NO11G02100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G02100.3NO11G02100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591387gene_5100Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g20gene5492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02100.1NO11G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G02100.2NO11G02100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G02100.3NO11G02100.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02100 ID=NO11G02100|Name=NO11G02100|organism=Nannochloropsis oceanica|type=gene|length=3675bp
CTTTAAAATGGCTTGTGGTAGCAACAATCTGTAGACGTCTTCTGGTTCAC
TTGTAAAAAGGCACTGCTCTTGGTTTATTCTTGCGTCAGATCGTGGCCCA
GCTGAGGGTGTGAGGACTGGGGACATGTGGGCCGGCGAACAGGATGCCGC
AAGACGGCGAGCAACGGTGCAACATGGGATGCCTTGACACCAGTCTTGCC
ACCGCGAGCGTGAAATCTGGTATTGCACTGGTCAATACTTCTATTCTTGG
ACCGGATGGTTCTTTGTGTGGTGTCTTTTGATTGTCATCTTGCATGCCCT
ACTACCACAATATCGTTGTGTTGACATCGAGGGGGGGGTGGGAGGTCGAA
TCCGATAAGGGTGGTGGGGGGAGGGAGGCTCCTGTCCCAGGAGgtgacaa
ggcggagaacataatttagcgcgccgcccactcgcgcaccacacacttaa
ctcccatcctttcatctcacaccgccaaccatactccaccagaggcaact
aggtagctgggaacgccagccatggcctcctaaatctccgcattccttgc
caagccaagcaaattcccactagtgtgtccttactccatccaccgttcgc
tccaccagCCATCGTCTTACCCCTTGGGCAGAAGGGAGAGGACAAGCCGT
CCACGAGCACTCCACCAACCATTCTTTCGGCCCCCGCAGCCATTGACGTT
GCCCTTCCTGCTGCTGCTTCCGTCGCAGCTAGCTCGCCCGCAAACGTgta
cgtagctttcaaatattgcaagaaaaccgagcactcacaatcgtagatag
cgagcctctatcccttatcaatcgccttctctctatcctttcccgagacc
atagacccgacgctctatctcatgtcaatctcatcattcccggatagctc
cgatctgcttcttctcttgatatcattatcccacaccaccttattccctt
tttgtccccctccatccaacccgctcattcagCAAAGTGATGGCCTCGAC
CGCAGCCACTTCCGTCGCTGGAGCGGCGCCTGCTGACGCCCCTCAAGCTC
GCGACAAGTACAAGGGGAAGGGAGCCATGCCCCTCGACTCTGTCTTGGAG
GGCTTGCTCTCTCTCCGTTCCCCCGCCATGCCGTTATCCTCTCCAGCCGC
CACCGCCGGCACGACATTCCCGAGTAGCTCCCCTGCGGCAGGCCCACCAG
TTGGTGCAGCAGCAGCTTGCGCAGCCACCGACAAGGCCGCCGTCTCCTGC
CCTCTGCACCCCTGCCCTTCAGCTCTCCCAGCCCCTGCTGCTCACTTCAT
GGACTGCGgtcaaggccgtcatcaaccaatggaagtttccctccctcctt
ctctgtctccttccctcctttcaccgtccccgtttcctccccgtcatcac
ccttgcgctcctaccttcgggtcacgcgacatgtccttcttccccccctc
caccaagGCCCCACCATGTCCCCCTCCTCTGTCTCGCCCGACCAGAAAGT
CAAGCATGCCCCCGCCACTATTGGATCCAACACAGTCCCTTATTCTCCCC
CTCTTCCTCCTCTCCTTCCCCATCTTCCTCCTTTCGGCCAGATGGCGGCC
GCTGCCACTGTAACCTCCGCAGCCGCCGTCGTTGCGCATGCCGCGCACGC
AGCAGCGGGTGCCGCTGAGAGCAACAAGATCCAAGCGGAGAAGCTGCTGG
TGTCCATCCCTACTGACTCGCTCGACACTTCCTCAATCATTGCTTCCGAC
CCTGCAGACGCCCATCGGCTCGCCTTGACGGCCGCCAATGCTGCTTCTGT
CGCCAGCCACGGGGAGGTAGGAGAGGAAGAGGGAGATGAGGGGCTGCGTC
TCATCATCAACCAGCAGGTCGCATTAGTCCCTTCCCAGACGAGTGCGGTC
TTGAGTCAAAATCAGGAGTCGAGGATAAAAAATTTAGAAAAAATTCCTCC
AGAAGCCGTCCGGGCCTTGGAGGCCACGTTGTCTGCTATTCCGGCGTGGG
GGGTGAGAATCACCAAGGAGAAGCTGGAGGTGTTGGGGGCGGTCGTGTTG
GGTTCGCCGGTATTGATGGAGGGGGAGAAGAGCGATGGGCGGGTGGACTA
CAGCCCGAAGAATTACCACATTGAGTGCAAGCGTTGCGCCAAGAGGTTCT
TGGGAAAGAATGCGTTGAGgtagggtgggcgggagggagggagggacgga
gggagggtcgaaaggagggttggactcattaattgtcctactcggcgttc
gagcatgttttatgctgcttctacagtcaccctccctcgctctctccctc
cctttcttccgtcctccctccattttctagAAATTTCGAATTGCATGCTA
TTTTTTGGGCTCTCTACCGGGCCCATCCTGCCATCGCCCGTGCTGGCCCT
GCTGCTGCCGCCACTGCAGCCACGTCTTCAGCTGTGGACGCAGAGGAGAA
CGAAGGGAAGGACATGCCTTCAGGTCTCGAAGGTCCTGGGAGCAGCAGCA
GTAGCGGCAGCAGTAATAGTGGTGCGGTGAAGGCGGCAGCTCAGGTATTG
GGAGAACACCATCAGTTGAACTACCCCTGCAACAGCGTCTCGAGAGATGT
GGTTGTCTTTATGGAGGCGCGAAAACCCGTTTTGTGTAACAATCAGAAGA
AGATTTTTATGCTCCGGGGGAACTTGCACCACGACACGAGCCTGTTCCAA
GGCCGGGCGTGGCTGCAAATCCCGGCGGGGAAGACATGGGAGTGCTGCAA
gtatgtgacggggggacggaggggagggggggaagggacaggaggggaga
ggggaggggaaggatgtctttgtgatttgggtcggcgtgcgcgtgtttct
cgtgcttgtcgtcttcgctactacttcctcactcactcactattctctcg
tactgtaattgtccacctctttcgaaacatatttgccgactactctctca
ctcttcattctctcgaacgatgcttgtccaccacttaccaacagGCTAGC
GGATCCCAACTCCACACAAAACGTCCTCTGGTGCCGCGGGGGCAAGGCAC
TGGAAGCCTACGAGACTCTGCGCTCCCATATATTTTCTTGGCACGACTCG
GGTGTGTTTACGGCGTGCAGACATTGCAATCGCGTGTATCAGAACACGAG
GGCCTTTTTGAGTCACGGgtaagggagagagggagggagggagggaggga
gagagggagaataggtaattcgtgtgatattttttttttatcaaagcggg
ccagcgtgatgtgacctatccctctccctccctctttcccctcctcctgc
ttccttttccctactgctgttcacgcaaaaccctgccggttcgcctgacg
accccccaggagatgatattgcatcattgcgtcgtgctctcacaccacgc
ctttctctttctcactctcacccctctccgtcttgcacttttttcctcct
ttccctccctccagATGCGTCAAGAAGAGCCCCGCTGGCCTCCTAGACGA
TCCTTACAAGGATGATACTGCTGTTGCGTCGTGCTCGCAATCCATGTGGT
CCTTCCTAGAGGTGTCACCTGATTTCGCCCAGCTGTTTTACCAGTTGCAG
TCGCTTCCGACGGACAGAAAGGAGGAGGTTTTCGATCGAGTGAGTAAGAG
GTTGAAGTCCACCACCAATCTCTAG
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protein sequence of NO11G02100.1

>NO11G02100.1-protein ID=NO11G02100.1-protein|Name=NO11G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=694bp
MPYYHNIVVLTSRGGWEVESDKGGGGREAPVPGAIVLPLGQKGEDKPSTS
TPPTILSAPAAIDVALPAAASVAASSPANVKVMASTAATSVAGAAPADAP
QARDKYKGKGAMPLDSVLEGLLSLRSPAMPLSSPAATAGTTFPSSSPAAG
PPVGAAAACAATDKAAVSCPLHPCPSALPAPAAHFMDCGPTMSPSSVSPD
QKVKHAPATIGSNTVPYSPPLPPLLPHLPPFGQMAAAATVTSAAAVVAHA
AHAAAGAAESNKIQAEKLLVSIPTDSLDTSSIIASDPADAHRLALTAANA
ASVASHGEVGEEEGDEGLRLIINQQVALVPSQTSAVLSQNQESRIKNLEK
IPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVLGSPVLMEGEKSDGR
VDYSPKNYHIECKRCAKRFLGKNALRNFELHAIFWALYRAHPAIARAGPA
AAATAATSSAVDAEENEGKDMPSGLEGPGSSSSSGSSNSGAVKAAAQVLG
EHHQLNYPCNSVSRDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQG
RAWLQIPAGKTWECCKLADPNSTQNVLWCRGGKALEAYETLRSHIFSWHD
SGVFTACRHCNRVYQNTRAFLSHGCVKKSPAGLLDDPYKDDTAVASCSQS
MWSFLEVSPDFAQLFYQLQSLPTDRKEEVFDRVSKRLKSTTNL*
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protein sequence of NO11G02100.2

>NO11G02100.2-protein ID=NO11G02100.2-protein|Name=NO11G02100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MSPSSVSPDQKVKHAPATIGSNTVPYSPPLPPLLPHLPPFGQMAAAATVT
SAAAVVAHAAHAAAGAAESNKIQAEKLLVSIPTDSLDTSSIIASDPADAH
RLALTAANAASVASHGEVGEEEGDEGLRLIINQQVALVPSQTSAVLSQNQ
ESRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVLGSPVL
MEGEKSDGRVDYSPKNYHIECKRCAKRFLGKNALRNFELHAIFWALYRAH
PAIARAGPAAAATAATSSAVDAEENEGKDMPSGLEGPGSSSSSGSSNSGA
VKAAAQVLGEHHQLNYPCNSVSRDVVVFMEARKPVLCNNQKKIFMLRGNL
HHDTSLFQGRAWLQIPAGKTWECCKLADPNSTQNVLWCRGGKALEAYETL
RSHIFSWHDSGVFTACRHCNRVYQNTRAFLSHGCVKKSPAGLLDDPYKDD
TAVASCSQSMWSFLEVSPDFAQLFYQLQSLPTDRKEEVFDRVSKRLKSTT
NL*
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protein sequence of NO11G02100.3

>NO11G02100.3-protein ID=NO11G02100.3-protein|Name=NO11G02100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MSPSSVSPDQKVKHAPATIGSNTVPYSPPLPPLLPHLPPFGQMAAAATVT
SAAAVVAHAAHAAAGAAESNKIQAEKLLVSIPTDSLDTSSIIASDPADAH
RLALTAANAASVASHGEVGEEEGDEGLRLIINQQVALVPSQTSAVLSQNQ
ESRIKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEVLGAVVLGSPVL
MEGEKSDGRVDYSPKNYHIECKRCAKRFLGKNALRNFELHAIFWALYRAH
PAIARAGPAAAATAATSSAVDAEENEGKDMPSGLEGPGSSSSSGSSNSGA
VKAAAQVLGEHHQLNYPCNSVSRDVVVFMEARKPVLCNNQKKIFMLRGNL
HHDTSLFQGRAWLQIPAGKTWECCKLADPNSTQNVLWCRGGKALEAYETL
RSHIFSWHDSGVFTACRHCNRVYQNTRAFLSHGCVKKSPAGLLDDPYKDD
TAVASCSQSMWSFLEVSPDFAQLFYQLQSLPTDRKEEVFDRVSKRLKSTT
NL*
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Synonyms
Publications