NO11G02070, NO11G02070 (gene) Nannochloropsis oceanica

Overview
NameNO11G02070
Unique NameNO11G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2869
Alignment locationchr11:662713..665581 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 4b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:662713..665581 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR003307W2_domain
Homology
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BLAST of NO11G02070 vs. NCBI_GenBank
Match: EWM25000.1 (putative cleavage-induced protein [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 2.900e-47
Identity = 105/140 (75.00%), Postives = 112/140 (80.00%), Query Frame = 0 
Query:  613 AKDLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQGSDEALAGLGWMAGKEYGMALLGLLRGNVEDQKEAVYAVQRVVEGRGYPKVPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDDDREEGNKRKAVVQTTPWF 753
            AK LVA GLKGKEL AA +EKG + KGSA+L  VL    S+EALA LGWMAG +YG  L   L  +  DQKEAVYAVQRVVE RGYPKV   GGDPLLEKLFHGLYGAD+LDE AFTGWRDDDREEGNKRKAVVQTTPWF
Sbjct:  137 AKALVASGLKGKELWAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKV---GGDPLLEKLFHGLYGADLLDEAAFTGWRDDDREEGNKRKAVVQTTPWF 273
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BLAST of NO11G02070 vs. NCBI_GenBank
Match: CBJ29858.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6 bits (187), Expect = 3.700e-10
Identity = 49/141 (34.75%), Postives = 71/141 (50.35%), Query Frame = 0 
Query:  615 DLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQGSDEALAGLGWMAGKEYGMALLGLLRG--NVEDQKEAVYAVQRVVEGRGYPKVPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDD-DREEGNKRKAVVQTTPWF 753
            + +A G +GK+L   V  +       ALL   L    S E    + WM   E+G AL  L  G  + + Q   +YAV       G+PK+   GG  +++ +F G+Y  D+ +E AF  W+DD D     + KAV+QTTPWF
Sbjct:  490 EALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPE---DMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKI---GGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWF 624
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BLAST of NO11G02070 vs. NCBI_GenBank
Match: GAX98415.1 (Hypothetical protein PINS_006272 [Pythium insidiosum])

HSP 1 Score: 72.0 bits (175), Expect = 9.100e-9
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = 0 
Query:  614 KDLVAGGLKGKELLAAVKEKGASVKG---SALLGEVLSVQGSDEALAGLGWMAGKEYGMAL-LGLLRGNVEDQKEAVYAVQRVVEGRGYPKVPKDGGDPLLEKLFHGLYGADVLDENAFTGWR-DDDREEGNKRKAVVQTTPW 752
            K++++ G  G+E LAAV +K  +  G     ++ E ++ Q  D A     W+A  +YG  L + L    VEDQ +A+YA+Q  + G  +PK        +LEK F  LY  D+++E AF  ++ D D +   + KA+VQT+ W
Sbjct: 1990 KEVLSXGKLGEE-LAAVAKKAFAASGRPSGGIVVEAVTKQAEDVAKGSANWIAPNKYGELLKVALADAPVEDQVKAIYALQVFLNGHDFPK-------GVLEKCFMALYTLDIIEEKAFFDYKYDVDSDVPGRMKAIVQTSNW 2124
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BLAST of NO11G02070 vs. NCBI_GenBank
Match: OEU09489.1 (hypothetical protein FRACYDRAFT_271354 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 66.6 bits (161), Expect = 3.800e-7
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = 0 
Query:  615 DLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQGSDEALAGLGWMAGKEYGMALLGLLRGNVEDQKEAVYAVQRVVEGRGYPKVPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDDD--REEGNKRKAVVQTTPWF 753
            +  +G   G +L A V+          L+  +L+           GW    +YG AL+ L+  ++  QKE ++AVQ+  +  G PK+     + +++ +F  +Y  D+ D+  FT W++D+    E  K KAV+QT  WF
Sbjct:  136 EFASGNKLGTDLQAWVESLPVVPSVERLVFHLLTETEKSTPDLECGWAESAKYGAALVSLVEDDLLKQKEILFAVQKYSQSLGMPKL---DDEYVVQAMFRAMYKFDLADDETFTLWKEDESPEHEAGKLKAVIQTVDWF 272
The following BLAST results are available for this feature:
BLAST of NO11G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25000.12.900e-4775.00putative cleavage-induced protein [Nannochloropsis... [more]
CBJ29858.13.700e-1034.75conserved unknown protein [Ectocarpus siliculosus][more]
GAX98415.19.100e-934.27Hypothetical protein PINS_006272 [Pythium insidios... [more]
OEU09489.13.800e-728.57hypothetical protein FRACYDRAFT_271354 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002052NSK002052Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02070.1NO11G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630787gene_5097Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g16gene5489Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02070.1NO11G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02070 ID=NO11G02070|Name=NO11G02070|organism=Nannochloropsis oceanica|type=gene|length=2869bp
GGTCTCTATGCCAGCATTCCCCCCTTGCGTGAAGCACACATCGCTTGGTC
GAATGAATCCTTGTATTGGTAGTGTGCCTCGTCTCGTGGTTTTATTTGAT
CTTCAGCACTGCGCAATGATTATGCTCTTCCCAAGCCTTCCAATCCACCC
ACAGGCTTTTTTTTGGTGGGTGCGTGTGTGGCTCTCGAGCGACTCATGCT
TCTTCCTTCATTTGCGAATGCCCCACCGTAATAAGCCAGCAATGAGGGCT
GATCACCATACCACACCACGTATTGGTTCTCCAAAGAGATGTCCTCAGTG
TATGCCCTCCTATATCCCCTCCGTTCACCATCCCATAGGCGCAGCAGCAC
ATTCGCAGCCGCCCACCTCAAAACACGAGTACTGAAAGGAGCAGGGTCTC
AAGCACCTCGTCTCCTTCTACGAAAACTTTCGACAAACAAAAAGCAAACA
AGCAAGCAAGCAACACCTGCAACATGTCTAAAAAAGGTACCAAGCTTTCC
CTTGGGGACTTCCAAAAGCTGAGCGGGGCCGTGGACAGGAACCCTCTGCC
TACCGGACCATCTGGCCGTTCGTCTGAGGATGGTCATCGGGGCGAAGGCC
GTCGCGGAGGAGGGAGAGGCGGCGGCGGTGGCTTCCGTGATCGCGATCGT
GGAGATCGTGAAGGGGGCAGTAATTCGGATGGAAGCTGGTCAAGGGGTGG
TGGCGCAGGGGGAGGTTTCGAGGACCGTGGAGGTTTTCGTGAAAGAGGAG
GAGGGGGACGTTTTGGAGATGATGACCGGGGCCCACCTCGCAGGGGAGGT
TTTGGGGATGATGAACGAGGCCCGCCTAGGTCAAGGGCCGATGACGGGCC
GTGGACTCGAGGAGGAGGAGACGACGACTTTGATCGTGCCCCGCCCCGTC
GTCGCGAGGGTATGGGTGGTGGAGGGAGGGAAGGAGGGGAAGGTGGGGCG
GACGACAACACGCCGACGAATTGGCGGGGACAGGGAGGAAGAGCGGGAGG
GGGGGAGGACATAGGCCCGCCTCGACGCGGGTATGATGGGCCTGCGGAGA
GGCCGCGGTTGAACCTAAAGCCGAGGAGTACTGCTGGTCCAGGGGGGGAG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAATAGCTTGTTTGGGGGTGC
CAAACCTGTTGATACGGCGGCAAGAGAGGAGGAGATTTTGACGCGGAAAT
TGGACAAGGTGAGGGTGGGAGGGGAGGAGGGAGTGGAGGAAGGAGGGGAA
GGTCCCGCTGCCGAGTCTCAGGAAGGAGGGAATGAGAGCACACCTGCTGC
TCCTGCTGCTGCTCTTGGGATCGAGTCTATGACTGAGGGAGGAGAGGCTG
AGACGAAGAAGGAGAAGGAGCAGCGGTGGGGAGGGGATAAGCCGGAGGGT
GAGGAGGAAGGGAGGGAGGGAGCGACGGTCCGACCCGTGCCTCGACGACG
ACCAACGCCTGAGCCTGCCCCCCGAAATATGAGATGGAAGGAGGACGGGC
CGGGGGAGGGAGGGAGAGAGGAAGGAAGACGGATGGGAGGGGGAGAGAAG
GAGCTGGGCAATGGACGTGGAGGAGGGATGGACCGAGGGATGGGGGGAGG
GCGGGGTGGTGGAGGAGGAGGGTTCGGTGGGGGCTATGGAAGGAAGGATG
ACATGGAAGCGGGAGGAAGAGATGGAGGGCGGGGTGGTGGAGGGGGAGGG
TTCGGTGGGGGCTATGGAAGGAGGGACCGAGATCGTGAGGGAGGAGATGA
CTATAGGCGGAGGGATGGGGAGGGTTTCGGGGGGGCTAGACGAGATGGAG
GCAGCAGGGAAGGAGGAAGGTTGGGAGATGACTATCCTCGACGGGGTGGA
TGGGAGGAAGAGCGTGGGGAGCTACGTCGGGAGGTAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGAGGAGGGAGGCGGAGTGCCGGAACGTCGTCCTTTG
CGGCGGTTCGCGCCTTCGGGGGGGGAAGATTTGTCGAGGCCACGTCGGTT
TGAAGAAAGgtgggactcacgtaccccccccccatatgggagtaggggaa
gtagccctgcgttgtcttctggtggagGAGGAGGAGGAGGAGGGGGGGAG
GAGGAGGAGGAGGAAGAGGAGGGGAAGGAGCGAACGCGGCTATCAAGGCT
GTAGCTGCTGCGGCGAAGGCGGCAGAGCAGGAGGAGAAGAAGTTGAAGAA
GGAGTCAGAGGCCGCGAAGCGTCAAGCAGAAGAGGAAGCCCGCCGCGCTG
CGAAGGAAGAGCAGGTTTTGCGGTTGAAGAGGGAAAAGGAGGCTCAGGTA
GCAGCAGCAGCAGAAGCAGCATTGATTGCCAAGGATTTGGTGGCTGGCGG
GCTCAAGGGCAAGGAGCTGCTGGCGGCCGTGAAGGAGAAGGGGGCATCGG
TGAAGGGCTCGGCCTTGTTGGGCGAGGTATTGTCGGTGCAAGGGTCGGAC
GAGGCGTTGGCAGGCTTGGGATGGATGGCCGGCAAGGAGTATGGAATGGC
GTTGTTGGGCTTGTTGAGGGGAAACGTGGAGGATCAGAAGGAGGCGGTGT
ATGCGGTGCAGAGAGTTGTGGAGGGAAGGGGGTATCCCAAGGTGCCGAAG
GATGGAGGGGATCCGTTGTTGGAGAAGCTGTTTCATGGGCTGTATGGCGC
AGACGTGCTGGATGAGAATGCCTTCACAGGGTGGAGAGATGATGACAGAG
AGGAAGGGAATAAGCGCAAGGCGGTTGTGCAGACCACGCCGTGGTTTCAG
TGGTTAGAAACGGCGGAGGAGGAGGAGGAGGAGGAGGAGGATGATATCGA
GGAGCTGAATAATATCTAA
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protein sequence of NO11G02070.1

>NO11G02070.1-protein ID=NO11G02070.1-protein|Name=NO11G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MSKKGTKLSLGDFQKLSGAVDRNPLPTGPSGRSSEDGHRGEGRRGGGRGG
GGGFRDRDRGDREGGSNSDGSWSRGGGAGGGFEDRGGFRERGGGGRFGDD
DRGPPRRGGFGDDERGPPRSRADDGPWTRGGGDDDFDRAPPRRREGMGGG
GREGGEGGADDNTPTNWRGQGGRAGGGEDIGPPRRGYDGPAERPRLNLKP
RSTAGPGGEGGGGGGGGGGNSLFGGAKPVDTAAREEEILTRKLDKVRVGG
EEGVEEGGEGPAAESQEGGNESTPAAPAAALGIESMTEGGEAETKKEKEQ
RWGGDKPEGEEEGREGATVRPVPRRRPTPEPAPRNMRWKEDGPGEGGREE
GRRMGGGEKELGNGRGGGMDRGMGGGRGGGGGGFGGGYGRKDDMEAGGRD
GGRGGGGGGFGGGYGRRDRDREGGDDYRRRDGEGFGGARRDGGSREGGRL
GDDYPRRGGWEEERGELRREVGGGGGGGGGGGGGGGGGEGGGGGGGGEEG
GGVPERRPLRRFAPSGGEDLSRPRRFEERRRRRRGGGGGGGRGGEGANAA
IKAVAAAAKAAEQEEKKLKKESEAAKRQAEEEARRAAKEEQVLRLKREKE
AQVAAAAEAALIAKDLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQ
GSDEALAGLGWMAGKEYGMALLGLLRGNVEDQKEAVYAVQRVVEGRGYPK
VPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDDDREEGNKRKAVVQTTP
WFQWLETAEEEEEEEEDDIEELNNI*
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Synonyms
Publications