NO11G02020, NO11G02020 (gene) Nannochloropsis oceanica

Overview
NameNO11G02020
Unique NameNO11G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr11:646776..648299 +

Link to JBrowse

Properties
Property NameValue
DescriptionH/ACA ribonucleoprotein complex subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:646776..648299 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0031429box H/ACA snoRNP complex
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR021154H/ACA_rnp_Gar1
IPR007504H/ACA_rnp_Gar1/Naf1
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_005852493.1 (H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526] >EKU23341.1 H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 195.7 bits (496), Expect = 1.500e-46
Identity = 118/133 (88.72%), Postives = 124/133 (93.23%), Query Frame = 0 
Query:    1 MRPPMHRGGGRXXXXXXXXXXXXXXXXXXXXXXXPGRGYDEGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFT 134
            MRPPMHRGGGR    XXXXXXXXXXXXXXXXXXX    YDEGPPEQVVEAG+F+HEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPD+GVSAKSFK +DK+YIGTDKLLPL+RFT
Sbjct:    1 MRPPMHRGGGR---GXXXXXXXXXXXXXXXXXXXXXXXYDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFT 130
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: EWM25001.1 (h aca ribonucleoprotein complex subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 1.000e-31
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 0 
Query:   61 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSG 137
            MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPD+GVSAKSFK +DK+YIGTDKLLPL+RFT  G
Sbjct:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGG 76
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_008611150.1 (H/ACA ribonucleoprotein complex subunit 1 [Saprolegnia diclina VS20] >EQC35400.1 H/ACA ribonucleoprotein complex subunit 1 [Saprolegnia diclina VS20])

HSP 1 Score: 143.7 bits (361), Expect = 6.800e-31
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0 
Query:   40 DEGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSG 137
            DEGPP  VVE G F+H  E EM+ K TN+ +PYFNAG +LENKT++GKV+E+LG IN V FTVKPD+GVSAKSFK  DKVYI  DKLLPL+RFT  G
Sbjct:   40 DEGPPATVVELGIFIHACEDEMVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_024578944.1 (h aca ribonucleoprotein complex subunit 1 [Plasmopara halstedii] >CEG42575.1 h aca ribonucleoprotein complex subunit 1 [Plasmopara halstedii])

HSP 1 Score: 143.7 bits (361), Expect = 6.800e-31
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K +N+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPDSGVSA SF+  DKVYI  DKLLPL+RFT   G
Sbjct:   36 EGPPSFVVELGSFMHACENEMVYKSSNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSASSFQAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: OWZ16743.1 (H/ACA ribonucleoprotein complex subunit [Phytophthora megakarya])

HSP 1 Score: 143.7 bits (361), Expect = 6.800e-31
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF+  DKV+I  DKLLPLARFT   G
Sbjct:   36 EGPPSFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQAGDKVFISPDKLLPLARFTEKPG 132
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_009530507.1 (hypothetical protein PHYSODRAFT_302836 [Phytophthora sojae] >EGZ13078.1 hypothetical protein PHYSODRAFT_302836 [Phytophthora sojae])

HSP 1 Score: 143.3 bits (360), Expect = 8.900e-31
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF+  DKV+I  DKLLPLARFT   G
Sbjct:   33 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQTGDKVFISPDKLLPLARFTEKPG 129
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: ETI54770.1 (hypothetical protein F443_02470 [Phytophthora parasitica P1569] >ETK94627.1 hypothetical protein L915_02352 [Phytophthora parasitica] >ETL48022.1 hypothetical protein L916_02313 [Phytophthora parasitica] >ETM01124.1 hypothetical protein L917_02242 [Phytophthora parasitica] >ETM54298.1 hypothetical protein L914_02342 [Phytophthora parasitica] >ETO83538.1 hypothetical protein F444_02453 [Phytophthora parasitica P1976] >ETP24608.1 hypothetical protein F441_02418 [Phytophthora parasitica CJ01A1] >ETP52565.1 hypothetical protein F442_02438 [Phytophthora parasitica P10297])

HSP 1 Score: 142.5 bits (358), Expect = 1.500e-30
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF   DKVYI  DKLLPL+RFT   G
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_008899697.1 (hypothetical protein PPTG_07283 [Phytophthora parasitica INRA-310] >ETN15082.1 hypothetical protein PPTG_07283 [Phytophthora parasitica INRA-310])

HSP 1 Score: 142.5 bits (358), Expect = 1.500e-30
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF   DKVYI  DKLLPL+RFT   G
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: KUF83102.1 (H/ACA ribonucleoprotein complex subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 142.5 bits (358), Expect = 1.500e-30
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF   DKVYI  DKLLPL+RFT   G
Sbjct:   36 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of NO11G02020 vs. NCBI_GenBank
Match: XP_002897936.1 (H/ACA ribonucleoprotein complex subunit, putative [Phytophthora infestans T30-4] >EEY64433.1 H/ACA ribonucleoprotein complex subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 141.7 bits (356), Expect = 2.600e-30
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0 
Query:   41 EGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGG 138
            EGPP  VVE GSFMH  E EM+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF+  DKV+I  DKLLPL+RFT   G
Sbjct:  110 EGPPAFVVELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFTEKPG 206
The following BLAST results are available for this feature:
BLAST of NO11G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852493.11.500e-4688.72H/ACA ribonucleoprotein complex subunit 1, partial... [more]
EWM25001.11.000e-3190.79h aca ribonucleoprotein complex subunit 1 [Nannoch... [more]
XP_008611150.16.800e-3168.04H/ACA ribonucleoprotein complex subunit 1 [Saprole... [more]
XP_024578944.16.800e-3169.07h aca ribonucleoprotein complex subunit 1 [Plasmop... [more]
OWZ16743.16.800e-3169.07H/ACA ribonucleoprotein complex subunit [Phytophth... [more]
XP_009530507.18.900e-3169.07hypothetical protein PHYSODRAFT_302836 [Phytophtho... [more]
ETI54770.11.500e-3069.07hypothetical protein F443_02470 [Phytophthora para... [more]
XP_008899697.11.500e-3069.07hypothetical protein PPTG_07283 [Phytophthora para... [more]
KUF83102.11.500e-3069.07H/ACA ribonucleoprotein complex subunit 1 [Phytoph... [more]
XP_002897936.12.600e-3068.04H/ACA ribonucleoprotein complex subunit, putative ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002058NSK002058Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02020.1NO11G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671252gene_5092Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g11gene5484Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02020.1NO11G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02020 ID=NO11G02020|Name=NO11G02020|organism=Nannochloropsis oceanica|type=gene|length=1524bp
CTGTGAATTGTGTGCGTTGTTGCGTGTGTTGGAAACGGTGAGACTTCGTG
AGAATTTTAAGTAGACTCACGCCAATGCTCTTGGAGGGTGAAGGGTCGCT
CAAGTGCGTGTTTGTATCACGCAAAAGGGGGAGGAATAAGAAGCAATGCG
GGCCATGTGCATTGCTTGGTGGAGGAAGGTCTCCACTGGCAAGTGATCGC
CGTCTTATGCATCAAACCCCTTAAGCCTAGTAAACACAACGGGCATCGGG
CTCATCACCATGGTACATACAGGCACAAATATCTGGAGACTGCCGTGGGA
TGGTCATTGCGCTTACTTTTGGTTTCTTGTTGGTAGCTTGCATCGAAACC
TTCCCAACCACTCTGCACCCACTCCCTCTCTTCCTTCATTCATCAAAATA
AGGATACCAACACCCTTTGACCCACCCTTCACCTTCCAGGGCACACAATG
CGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGG
TGGAGGTTTCCGGGGCGGACGAGgtaagctatttaattgtcaacctaccc
ccatccccctgcccctcccccatccctcttcccctatcctcatccccctc
cttctatccccctttccttccccttctcatctctttttctggcttcctct
accccatctcttttttttggcttcctctacaccaatagGCGGTGGCGGCG
GTGGACGTTATGGTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAA
GTGGTGGAGGCCGGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCAT
CAAGCTGACCAATGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGG
AAAACAAGACGCGGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAAT
CAGGTGTATTTCACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTT
CAAGCCTGATGACAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTG
CCCGCTTTACAAGCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGA
GGAGGACGAGGAGGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGC
GCGTGGTGGCGGTTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAG
GAAGGAGCTTTGGAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGA
CGGGGGCCGCCGCGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCG
GTTTTAAGCGAGAAAAAGGATGGTATTTATGTGTGTATGTGTGCGTGAGT
GTACGCAGCCGAGTGAGGAGGCGTGACAAGCCAGAGAGAAATGAGATACA
GGGATTGAGAAAATGAAGGGGAAAAGAGAGTGTGTGCATGATGCAGCTTG
TGGCCTCCGTGTATTTAAAGAAGCATGACCCCACAAAAAGACATGCCAAA
AAAATGAAGTAAAACGAGCAGGATACTTAAAAACTGCCTTGGTGTGACGC
CACATTATTCTTAAGAATTTACAG
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protein sequence of NO11G02020.1

>NO11G02020.1-protein ID=NO11G02020.1-protein|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEA
GSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYF
TVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGRG
GGRGGGRGGVGAARGGGFGGRGGGRGFGGGRSFGGGGRGGGFSSRGRGPP
RGGGFRGGGGRGRF*
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Synonyms
Publications