NO11G02010, NO11G02010 (gene) Nannochloropsis oceanica

Overview
NameNO11G02010
Unique NameNO11G02010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1874
Alignment locationchr11:645362..647235 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:645362..647235 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_012200114.1 (hypothetical protein SPRG_19887 [Saprolegnia parasitica CBS 223.65] >KDO29215.1 hypothetical protein SPRG_19887 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKK---TDDDLPKNGLYAYFVRAGHSGY 58
            ME  ++  LHD L++LRP+GK+GGLG    FG K     DD LP NGLY+ FVR GH GY
Sbjct:    1 MEQSKLVALHDMLQRLRPKGKSGGLGSGGSFGLKSHGPRDDGLPNNGLYSMFVREGHGGY 60
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: CCA17502.1 (AlNc14C36G3171 [Albugo laibachii Nc14])

HSP 1 Score: 68.9 bits (167), Expect = 3.800e-8
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSS---GFGPKKTDDDLPKNGLYAYFVRAGHSGY 58
            MEDE++ +LHD L +LRP GK GGLGFS+   G G     D LP NGLYA FVR GH+ +
Sbjct:    1 MEDEKLVQLHDVLSRLRPGGKKGGLGFSNLTLGNGKSGRTDGLPDNGLYAMFVREGHNAH 60
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_009839352.1 (hypothetical protein H257_13506 [Aphanomyces astaci] >ETV71106.1 hypothetical protein H257_13506 [Aphanomyces astaci])

HSP 1 Score: 68.2 bits (165), Expect = 6.500e-8
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKK---TDDDLPKNGLYAYFVRAGHSGY 58
            ME+ ++ RLHD L+KLRP+GK GGLG S G   K     DD LP NGLY+ FVR GH GY
Sbjct:    1 MEESKLLRLHDMLQKLRPKGK-GGLGSSGGLMSKNQGPRDDGLPDNGLYSMFVREGHGGY 59
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_024571675.1 (hypothetical protein PHALS_09432 [Plasmopara halstedii] >CEG35306.1 hypothetical protein PHALS_09432 [Plasmopara halstedii])

HSP 1 Score: 68.2 bits (165), Expect = 6.500e-8
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGYK 59
            ME+E++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y+
Sbjct:    1 MEEEKLIRLHDMLAKLRPGGKKGGLGFASIGGRKGVKRSDGLPNNGLYSMFVRQGEGSYQ 60
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: OQR98729.1 (hypothetical protein THRCLA_06689 [Thraustotheca clavata])

HSP 1 Score: 67.8 bits (164), Expect = 8.500e-8
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKT----DDDLPKNGLYAYFVRAGHSGY 58
            ME  ++  LHD L++LRP+GK+GGLG   G    K+    DD LP NGLY  FVR GH GY
Sbjct:    1 MESSKLVALHDMLQRLRPKGKSGGLGLGGGSAGLKSHGPRDDGLPNNGLYTMFVREGHGGY 61
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: CCI44206.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSS---GFGPKKTDDDLPKNGLYAYFVRAGHSG--YKKWGED 64
            MEDE++ +LHD L +LRP G+ GGLG+S+   G G     D LP NGLY+ FVR GH+   ++++G+D
Sbjct:    1 MEDEKLVQLHDVLSRLRPGGRKGGLGYSNLAVGNGKSGRTDGLPDNGLYSMFVREGHNAHLHQRFGDD 68
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: OQR93858.1 (hypothetical protein ACHHYP_20090 [Achlya hypogyna])

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-7
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSG-FGPKK---TDDDLPKNGLYAYFVRAGHSGY 58
            ME  ++  LHD L++LRP+GK+GGLG   G FG K     DD LP NGLY+ FVR GH GY
Sbjct:    1 MEASKLVALHDMLQRLRPKGKSGGLGSGGGSFGLKSHGPRDDGLPNNGLYSMFVREGHGGY 61
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: GAX92280.1 (Hypothetical protein PINS_000167 [Pythium insidiosum])

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-7
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTD---DDLPKNGLYAYFVRAGHSGYK 59
            MED ++ +LH+TL KLRP GK GGLGF +G   +K     D LP NGLY+ FVR G  GY+
Sbjct:    1 MEDHKLIQLHETLSKLRPGGKVGGLGFGAGGIRRKNGKRVDGLPDNGLYSMFVREGEGGYQ 61
[Close]
BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_008869547.1 (hypothetical protein H310_06315 [Aphanomyces invadans] >ETW01699.1 hypothetical protein H310_06315 [Aphanomyces invadans])

HSP 1 Score: 65.9 bits (159), Expect = 3.200e-7
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKK---TDDDLPKNGLYAYFVRAGHSGY 58
            ME+ ++ RLHD L++LRP+GK GGLG   G   K     DD LP NGLY+ FVR GH GY
Sbjct:    1 MEESKLVRLHDMLQRLRPKGK-GGLGSGGGLMSKNQGPRDDGLPNNGLYSMFVREGHGGY 59
The following BLAST results are available for this feature:
BLAST of NO11G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
XP_012200114.11.300e-855.00hypothetical protein SPRG_19887 [Saprolegnia paras... [more]
CCA17502.13.800e-856.67AlNc14C36G3171 [Albugo laibachii Nc14][more]
XP_009839352.16.500e-858.33hypothetical protein H257_13506 [Aphanomyces astac... [more]
XP_024571675.16.500e-858.33hypothetical protein PHALS_09432 [Plasmopara halst... [more]
OQR98729.18.500e-852.46hypothetical protein THRCLA_06689 [Thraustotheca c... [more]
CCI44206.11.100e-748.53unnamed protein product [Albugo candida][more]
OQR93858.11.100e-755.74hypothetical protein ACHHYP_20090 [Achlya hypogyna... [more]
GAX92280.11.900e-754.10Hypothetical protein PINS_000167 [Pythium insidios... [more]
XP_008869547.13.200e-755.00hypothetical protein H310_06315 [Aphanomyces invad... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002059NSK002059Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02010.1NO11G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591354gene_5091Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g10gene5483Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02010.1NO11G02010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02010 ID=NO11G02010|Name=NO11G02010|organism=Nannochloropsis oceanica|type=gene|length=1874bp
TGGGGGGTCGCATTGTGTGCCCTGGAAGGTGAAGGGTGGGTCAAAGGGTG
TTGGTATCCTTATTTTGATGAATGAAGGAAGAGAGGGAGTGGGTGCAGAG
TGGTTGGGAAGGTTTCGATGCAAGCTACCAACAAGAAACCAAAAGTAAGC
GCAATGACCATCCCACGGCAGTCTCCAGATATTTGTGCCTGTATGTACCA
TGGTGATGAGCCCGATGCCCGTTGTGTTTACTAGGCTTAAGGGGTTTGAT
GCATAAGACGGCGATCACTTGCCAGTGGAGACCTTCCTCCACCAAGCAAT
GCACATGGCCCGCATTGCTTCTTATTCCTCCCCCTTTTGCGTGATACAAA
CACGCACTTGAGCGACCCTTCACCCTCCAAGAGCATTGGCGTGAGTCTAC
TTAAAATTCTCACGAAGTCTCACCGTTTCCAACACACGCAACAACGCACA
CAATTCACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTG
ACCATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCT
CCGACCCCGAGGCAAGgtaagatacaagttggtgcctgagtgtgtctcca
tgtaccttgtgtgtcctacttcactcggcgcctcatcctcctctcccata
ccccacccacacacatataaccgaaataaagACGGGAGGCCTGGGCTTCA
GTTCAGGCTTTGGGCCCAAGAAGACTGACGACGACTTACCCAAGAATGGT
TTGTACGCATATTTTGTCCGCGCAGGACATAGTGGGTATAAGAAATGGGG
AGAGGATGCAGAGGAGAAGGAGGAGGAGGAGAATAGGAGCAGCACCTTGG
CTAATGATGGCGATAGCAGCAGCAAGAATAAAAAGAAGAAGAACAGGAAG
ACGGAAAAGGAGCGAAACACCAATAAGCGCAAGGATTTGGAGTTGACAGA
AGCGGAGGAGAGGGAGGAAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGA
GCGCCAAGGAGGAAGACGAAGAGGAAGAGGAAGAGAAGGTACCGCAAAAT
CCTCAAGCTGGCGATGCCACCACAACATCCACATCACCAGACAAGGCCTT
TCCCTGGGTGAAGAACATCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGA
AACTTTGTTTGAGGAAGCTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCT
GCAGCAACAGCCGCAGCACCATCGGCGTCAGTCGACAATAAAAAAAGCAA
GAAGGTTTTGACGCAGGCGTTTCATTTGGTCCTTGACACGCATGACTTGT
TGCATGTACAGGATGGGGTGGTTCATTATCTGAGGAAGAAAAAGGACAGG
AAAGGAGGTGAGGTGGGAAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGA
GGAGGAGGAAGAGAGGGAGAAGAAAGGGAAGAAGGAGATGGCGAAGTATG
TGAAGTCGACGACAAAGAAAAAGAAAAATTTGGTCGAGAAGAAGATAAAG
AAGGGGATGAAAAGCGACACGCTGATGAAGGACGAAAAGGTGGAGCAGGA
TGAAGAGGCGGTGGTGGAGAAGGAGAAAAAAAACGAGAAACGCAAGGCCA
CGTTTGTGAAGGAGGAAGTGAAAGAGGAAGACAAAGAGGAGGGAGGATTG
GTGGTTGTAGGAAAGAAGACCAAACGGGAGAAAAAGGAAGCCAAGGAGGA
GAAGAAGAAGAAGGAGGAGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGA
AGCAGAAGAAGAAGAAGGGAAGCAAAGCCTAGAGCATGAAGTTATTTCTT
AGATATTTGTAAAAAAACTAGTTTCCAAATGCTCACCACCAGGAAAGAAA
CAACACCAACGACTGCATGGCAGC
back to top

protein sequence of NO11G02010.1

>NO11G02010.1-protein ID=NO11G02010.1-protein|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFV
RAGHSGYKKWGEDAEEKEEEENRSSTLANDGDSSSKNKKKKNRKTEKERN
TNKRKDLELTEAEEREEGEPSKKRRRKSAKEEDEEEEEEKVPQNPQAGDA
TTTSTSPDKAFPWVKNIKRVLKETEEKKLCLRKLRKQVVGAAAAAATAAA
PSASVDNKKSKKVLTQAFHLVLDTHDLLHVQDGVVHYLRKKKDRKGGEVG
KEEEEEEENEEEEEEREKKGKKEMAKYVKSTTKKKKNLVEKKIKKGMKSD
TLMKDEKVEQDEEAVVEKEKKNEKRKATFVKEEVKEEDKEEGGLVVVGKK
TKREKKEAKEEKKKKEEAAALLVKASKKQKKKKGSKA*
back to top
Synonyms
Publications