NO11G02010, NO11G02010 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G02010
Unique Name	NO11G02010
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1874
Alignment location	chr11:645362..647235 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:645362..647235 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: EWM25012.1 (hypothetical protein Naga_100068g10 [Nannochloropsis gaditana])

HSP 1 Score: 142.5 bits (358), Expect = 2.700e-30
Identity = 134/237 (56.54%), Postives = 143/237 (60.34%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFVRAGHSGYKKWGEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPDKAFPWVKNIKRVLKETEEKKLCLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTQAFHLVLDTHDLLHVQDGVVHY 238
            MED+RMQRLHDTL+KLRPRGKTGGLGF+SGFGPKKTDD LPKNGLYAYFVRAGH GYKKWG+D                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   + D  F W K+IKRVLK  EE K+ LR                               L  AFH  +DTHDLLHV+DGVVHY
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDD-------DIAEVKPESEGESSLPVRGYIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAVSWEALQNPQAGDATVAGDIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHY 230

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_005852491.1 (hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526] >EKU23339.1 hypothetical protein NGA_0337902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.7 bits (343), Expect = 1.500e-28
Identity = 137/237 (57.81%), Postives = 146/237 (61.60%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFVRAGHSGYKKWGEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPDKAFPWVKNIKRVLKETEEKKLCLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTQAFHLVLDTHDLLHVQDGVVHY 238
            MED+RMQRLHDTL+KLRPRGKTGGLGF+SGFGPKKTDD LPKNGLYAYFVRAGH GYKKWG+D                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               + D  F W K+IKR LK  EE K+ LR                               L  AFH  +DTHDLLHV+DGVVHY
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDD-------DIAEVKPESEGESSLPVRGYIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWEALQNPQAGDATVAGDIKFSWHKHIKRALKAAEE-KVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHY 229

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_008893114.1 (hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >ETI45323.1 hypothetical protein F443_10056 [Phytophthora parasitica P1569] >ETL91842.1 hypothetical protein L917_09678 [Phytophthora parasitica] >ETM45117.1 hypothetical protein L914_09726 [Phytophthora parasitica] >ETN21312.1 hypothetical protein PPTG_01539 [Phytophthora parasitica INRA-310] >ETO73965.1 hypothetical protein F444_10154 [Phytophthora parasitica P1976])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: ETK85293.1 (hypothetical protein L915_09850 [Phytophthora parasitica] >ETL38713.1 hypothetical protein L916_09757 [Phytophthora parasitica] >ETP15141.1 hypothetical protein F441_09999 [Phytophthora parasitica CJ01A1] >ETP43236.1 hypothetical protein F442_09964 [Phytophthora parasitica P10297] >KUF67238.1 hypothetical protein AM587_10014796 [Phytophthora nicotianae])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: XP_002907897.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY60980.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: KUF96352.1 (hypothetical protein AM588_10007647 [Phytophthora nicotianae])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKGAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: POM70477.1 (hypothetical protein PHPALM_13076, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKSAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: POM80110.1 (hypothetical protein PHPALM_2096, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W ED
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASIGGRKSAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEED 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: OWZ17475.1 (hypothetical protein PHMEG_0008578 [Phytophthora megakarya])

HSP 1 Score: 71.6 bits (174), Expect = 5.900e-9
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPK--KTDDDLPKNGLYAYFVRAGHSGY--KKWGED 64
            MEDE++ RLHD L KLRP GK GGLGF+S  G K  K  D LP NGLY+ FVR G   Y  K W E+
Sbjct:    1 MEDEKLIRLHDMLSKLRPGGKKGGLGFASVGGRKSAKRSDGLPNNGLYSMFVRQGEGTYQHKHWEEN 67

[Close]

BLAST of NO11G02010 vs. NCBI_GenBank
Match: CBJ29853.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-8
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 0

Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGF---GPKKTDDDLPKNGLYAYFVRAGH 55
            MED ++QRLHDTL+KL P+G  GGLG S+G    G K+ D+ LPKNGLY+YFV+ GH
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLG-SAGLVKGGFKQRDNGLPKNGLYSYFVKPGH 56

The following BLAST results are available for this feature:

BLAST of NO11G02010 vs. NCBI_GenBank

BLAST of NO11G02010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19


Match Name	E-value	Identity	Description
EWM25012.1	2.700e-30	56.54	hypothetical protein Naga_100068g10 [Nannochlorops...	[more]
XP_005852491.1	1.500e-28	57.81	hypothetical protein NGA_0337902 [Nannochloropsis ...	[more]
XP_008893114.1	2.000e-9	59.70	hypothetical protein PPTG_01539 [Phytophthora para...	[more]
ETK85293.1	2.000e-9	59.70	hypothetical protein L915_09850 [Phytophthora para...	[more]
XP_002907897.1	2.000e-9	59.70	conserved hypothetical protein [Phytophthora infes...	[more]
KUF96352.1	2.000e-9	59.70	hypothetical protein AM588_10007647 [Phytophthora ...	[more]
POM70477.1	2.000e-9	59.70	hypothetical protein PHPALM_13076, partial [Phytop...	[more]
POM80110.1	2.000e-9	59.70	hypothetical protein PHPALM_2096, partial [Phytoph...	[more]
OWZ17475.1	5.900e-9	58.21	hypothetical protein PHMEG_0008578 [Phytophthora m...	[more]
CBJ29853.1	1.300e-8	61.40	expressed unknown protein [Ectocarpus siliculosus]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL115	nonsL115	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR010	ncniR010	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR018	ngnoR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002059	NSK002059	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO11G02010.1	NO11G02010.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591354	gene_5091	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100068g10	gene5483	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO11G02010.1	NO11G02010.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO11G02010 ID=NO11G02010|Name=NO11G02010|organism=Nannochloropsis oceanica|type=gene|length=1874bp
TGGGGGGTCGCATTGTGTGCCCTGGAAGGTGAAGGGTGGGTCAAAGGGTG
TTGGTATCCTTATTTTGATGAATGAAGGAAGAGAGGGAGTGGGTGCAGAG
TGGTTGGGAAGGTTTCGATGCAAGCTACCAACAAGAAACCAAAAGTAAGC
GCAATGACCATCCCACGGCAGTCTCCAGATATTTGTGCCTGTATGTACCA
TGGTGATGAGCCCGATGCCCGTTGTGTTTACTAGGCTTAAGGGGTTTGAT
GCATAAGACGGCGATCACTTGCCAGTGGAGACCTTCCTCCACCAAGCAAT
GCACATGGCCCGCATTGCTTCTTATTCCTCCCCCTTTTGCGTGATACAAA
CACGCACTTGAGCGACCCTTCACCCTCCAAGAGCATTGGCGTGAGTCTAC
TTAAAATTCTCACGAAGTCTCACCGTTTCCAACACACGCAACAACGCACA
CAATTCACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTG
ACCATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCT
CCGACCCCGAGGCAAGgtaagatacaagttggtgcctgagtgtgtctcca
tgtaccttgtgtgtcctacttcactcggcgcctcatcctcctctcccata
ccccacccacacacatataaccgaaataaagACGGGAGGCCTGGGCTTCA
GTTCAGGCTTTGGGCCCAAGAAGACTGACGACGACTTACCCAAGAATGGT
TTGTACGCATATTTTGTCCGCGCAGGACATAGTGGGTATAAGAAATGGGG
AGAGGATGCAGAGGAGAAGGAGGAGGAGGAGAATAGGAGCAGCACCTTGG
CTAATGATGGCGATAGCAGCAGCAAGAATAAAAAGAAGAAGAACAGGAAG
ACGGAAAAGGAGCGAAACACCAATAAGCGCAAGGATTTGGAGTTGACAGA
AGCGGAGGAGAGGGAGGAAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGA
GCGCCAAGGAGGAAGACGAAGAGGAAGAGGAAGAGAAGGTACCGCAAAAT
CCTCAAGCTGGCGATGCCACCACAACATCCACATCACCAGACAAGGCCTT
TCCCTGGGTGAAGAACATCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGA
AACTTTGTTTGAGGAAGCTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCT
GCAGCAACAGCCGCAGCACCATCGGCGTCAGTCGACAATAAAAAAAGCAA
GAAGGTTTTGACGCAGGCGTTTCATTTGGTCCTTGACACGCATGACTTGT
TGCATGTACAGGATGGGGTGGTTCATTATCTGAGGAAGAAAAAGGACAGG
AAAGGAGGTGAGGTGGGAAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGA
GGAGGAGGAAGAGAGGGAGAAGAAAGGGAAGAAGGAGATGGCGAAGTATG
TGAAGTCGACGACAAAGAAAAAGAAAAATTTGGTCGAGAAGAAGATAAAG
AAGGGGATGAAAAGCGACACGCTGATGAAGGACGAAAAGGTGGAGCAGGA
TGAAGAGGCGGTGGTGGAGAAGGAGAAAAAAAACGAGAAACGCAAGGCCA
CGTTTGTGAAGGAGGAAGTGAAAGAGGAAGACAAAGAGGAGGGAGGATTG
GTGGTTGTAGGAAAGAAGACCAAACGGGAGAAAAAGGAAGCCAAGGAGGA
GAAGAAGAAGAAGGAGGAGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGA
AGCAGAAGAAGAAGAAGGGAAGCAAAGCCTAGAGCATGAAGTTATTTCTT
AGATATTTGTAAAAAAACTAGTTTCCAAATGCTCACCACCAGGAAAGAAA
CAACACCAACGACTGCATGGCAGC

protein sequence of NO11G02010.1

>NO11G02010.1-protein ID=NO11G02010.1-protein|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFV
RAGHSGYKKWGEDAEEKEEEENRSSTLANDGDSSSKNKKKKNRKTEKERN
TNKRKDLELTEAEEREEGEPSKKRRRKSAKEEDEEEEEEKVPQNPQAGDA
TTTSTSPDKAFPWVKNIKRVLKETEEKKLCLRKLRKQVVGAAAAAATAAA
PSASVDNKKSKKVLTQAFHLVLDTHDLLHVQDGVVHYLRKKKDRKGGEVG
KEEEEEEENEEEEEEREKKGKKEMAKYVKSTTKKKKNLVEKKIKKGMKSD
TLMKDEKVEQDEEAVVEKEKKNEKRKATFVKEEVKEEDKEEGGLVVVGKK
TKREKKEAKEEKKKKEEAAALLVKASKKQKKKKGSKA*

Synonyms

Publications