NO11G01990, NO11G01990 (gene) Nannochloropsis oceanica

Overview
NameNO11G01990
Unique NameNO11G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr11:642744..644129 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:642744..644129 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01990.1NO11G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|542570gene_5089Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01990.1NO11G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01990 ID=NO11G01990|Name=NO11G01990|organism=Nannochloropsis oceanica|type=gene|length=1386bp
ATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCC
CACGGCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACA
GGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAA
TTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCG
TTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCAC
GAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCC
TCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGgt
atgttcattcctacatgtctcttcaatccctggtgcctttcccttctctg
tcatcatttcctccaatcctcctctccaatcctacaataaacaaaaagAA
CTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGG
TGGCCGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAAT
CGTCTCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGC
CAGGTATCAGCACCGgtacgtgtagtttgcagtgcaccttcaaggctttt
cgatgcatataccggatttttaaaatcgtaagaatacaacaaactttctt
gctttgtcatacactattctagAGCCGACCACCTGCGACAACAGCTGCGG
GACGATCGGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCT
CCAAGCCGTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAG
AGCTTTGCGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAG
CGAGCTATGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGgtgcg
tgagagagtgcccgggcagtagtgtatcggtagctaaaggtagctccatc
tcacaaaaacttctcaattcccaaccccctccctcttcaattttctgaca
tagaaataccagGTACGCTGCAAGGCTGCCGGTGCGGTCATTTTCACCTG
GTGGAAATGTCGGTGGCAGGTCTTGCAAGCCAAACGGTTGCGGCAGGCCC
TACTTGTGGAGCGGCAACGGCAGAAAGCCCAAGCTCGACTTAAGGTGGCC
CTCTTTGGACAATCCCATTTCCGGCGCCGACGAGACCATCGCTGGGTGGC
GACAATGCGGCGTCGGAGGATGCAGGAAGAAGCCTTGGCAGCAGCCGCAG
CGGCAGCAGCATCAGCAGCATGGGAGGAGGAGTTGGAACGGCGGCGGCGA
AGGCGGAGGGAGCTGCATGACCGACCGTTTCGTTGA
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protein sequence of NO11G01990.1

>NO11G01990.1-protein ID=NO11G01990.1-protein|Name=NO11G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSLGSSYLPRRRRPSQPTAPPLLHTSQAIQLTYRSASLEVSIYVRPLPSQ
FTPSLGWDEQWAARRDRLRRLPPRVPPSQLHPPRAPLAPPPSSSSSSNSA
STGFLVPYTNEFHRVTNFTSSFTGLYRDTTLSGVAVHNERLRRHMAMQEN
RLERRQMKCIQMQSLAARYQHRADHLRQQLRDDRQRKYTCLVSAVRRLQA
VFRLQQHLRRKKAKELCVANEAAMVVQDFGKRAMAIVNAKKELVRLVRCK
AAGAVIFTWWKCRWQVLQAKRLRQALLVERQRQKAQARLKVALFGQSHFR
RRRDHRWVATMRRRRMQEEALAAAAAAAASAAWEEELERRRRRRRELHDR
PFR*
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Synonyms
Publications