NO11G01920, NO11G01920 (gene) Nannochloropsis oceanica

Overview
NameNO11G01920
Unique NameNO11G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr11:627716..629617 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochodrial transcription termination factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:627716..629617 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Homology
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BLAST of NO11G01920 vs. NCBI_GenBank
Match: EWM25011.1 (Mitochodrial transcription termination factor [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 3.800e-98
Identity = 350/475 (73.68%), Postives = 394/475 (82.95%), Query Frame = 0 
Query:  120 GQDTLWENFIEIFDPVVATAPFLPSXXXXXXXXXXXXXXXRFYMNKAVPYFFLRDELGINENKMLRISLDNPQVLALSVERSLRPKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLKPKARFLRRDLGLDTDAMAFLLRRMPRALNYNIVSSGRPLLQYLTRGPFNFTREEVARIILRSPSLLSTDVTSPRFGLLLESLQQATNLPLGPALASILRRFPMILSFTASRLHASLDVLTDDLKCSSAEIASILQKHPQLLGYRPVAVREKLAALQEIYGLSEVEEGKKAVLRSPALLSYSLDTRLRPRLLRAAETGVELERAVSWLPLTEEKFEERVVKSSTEAISLANTPLLRHRSNAKLRKL 595
            G++T W+ FIEI +P  A     P+XXXXXXXXXXXXXXXR+YM   VPY+FLRDELG++E+ MLRISLD+ QVLALSVER+LRPKVA                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GLKPKARFLRRDLGLD   MA LLRRMPRALNYN+V  GRP LQYLT  P N ++EEVAR++LRSPSLLSTDV SPRF  L+++LQ AT LP GPA AS+L+RFPM+LSFTA+RL ASLDVL  DL C + ++A +LQKHPQL+GYRP AVR KL+ L+++YGL ++   K AVL++PAL+SYSLDTRLRPRL  AA  GV LERAV+WLPLTE KFEERV +SST+AISL +TPLLR R NA+LRK+
Sbjct:  127 GKETAWDQFIEILEPTSA-----PTXXXXXXXXXXXXXXXRYYMKTPVPYYFLRDELGVSESNMLRISLDHGQVLALSVERNLRPKVAWLRTTLRLTQPEAAALVGSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLKPKARFLRRDLGLDPPDMASLLRRMPRALNYNVVRRGRPFLQYLTGQPLNLSKEEVARMVLRSPSLLSTDVGSPRFLHLMDALQGATGLPPGPAFASLLQRFPMVLSFTAARLQASLDVLVRDLGCDAGDVALVLQKHPQLVGYRPEAVRLKLSLLRDVYGLEDLGAAKPAVLKAPALVSYSLDTRLRPRLEMAAAAGVPLERAVTWLPLTEAKFEERVGRSSTQAISLTDTPLLRQRPNARLRKI 596
The following BLAST results are available for this feature:
BLAST of NO11G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25011.13.800e-9873.68Mitochodrial transcription termination factor [Nan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002069NSK002069Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01920.1NO11G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671244gene_5082Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g2gene5475Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01920.1NO11G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01920 ID=NO11G01920|Name=NO11G01920|organism=Nannochloropsis oceanica|type=gene|length=1902bp
ATGCTCCTTCAAGGTATACTCCTCTTTCACGCCCTGGTCGCATTGCCGCG
GCCTGCCTTCGGCTTCGGCTCGCCCATTCTTTTCTCGTCGTCCATGATGC
ACAAGCTGCGCTCGAGGAATGCAGGGTTTGCCATTGCTGTCAAGAAGCGG
CTTGTCAAGGATGACGACAATTATAATAGTAGTGATGATATTCTTGCAAA
TTCTTTGTTGGTGGGTCCGTTGCCGATCCCTCTGCCTACTAAGATGGCTA
CAAAGAGCAACAAGGTCGCGAACACTGCTACTGAGGACGACGAGGCAGAC
GAGGATGAGATGGAAAAAGATGGAAATACAAGCAAAGCTGCAGTCCCTGT
TCCAGAAGGCCAAGACACTCTATGGGAGAATTTCATTGAAATATTTGACC
CCGTGGTAGCAACGGCTCCTTTTCTCCCTTCCTCCTCCTCCTCCAACTCC
AACTCTTCCGCCTCCACCACTTCTGCCCGCTTCTACATGAACAAGGCCGT
CCCTTACTTCTTCCTCCGCGATGAGCTGGGTATCAACGAAAACAAAATGT
TGCGCATCTCCTTGGATAACCCACAAGTTCTCGCCTTGAGCGTGGAACGA
AGCCTCCGTCCTAAGGTCGCTTGGCTTCGCTCGGCTCTTGGGTTGACACA
AGCGGAGGCGGCTACCCTGGTAGGGGGGAGTCCGGGTATGCTTTTGCTAA
GCGTCGAAGATAATCTTGCACCAAAACTCTCGTGGCTCCAAGATGAATTA
GGTTTCGAAACAGAAGAGAGACGCAAGCTGGTGATGCGCTGCCCGCAGGT
CTTGACAACTTCCCCAGGCTCCCTGCTCATGAAACTGGCCTTCCTAAAGG
ACGACGTCGGCATGTCCCGTGGCGAGGTCTACAGGGCTGTACGCTCCATG
CCTTCACTCCTCGTCCTCTCTCTCGACACCCTCGTCGACAAAGCCGAATA
CCTCACTGCAGAGTTCGGAGTCACTCAACAGGACGTAGGGTCTCTGCTCA
CCCGCGCGCCCGCCCTCTTCTTCCAATCCCTCGAAGCTGGATTGAAACCT
AAGGCCCGCTTCCTCCGTCGTGACCTCGGCCTCGATACGGATGCCATGGC
CTTCCTACTGCGACGGATGCCCCGCGCATTGAACTACAATATTGTCTCCA
GCGGCCGCCCCCTGCTGCAATACCTTACCCGTGGCCCGTTCAATTTCACT
CGTGAAGAAGTCGCCCGCATCATTCTCCGGTCCCCCTCCCTCCTCTCCAC
TGACGTCACCTCCCCGCGCTTCGGCCTCCTCCTTGAAAGTCTGCAACAAG
CAACCAACCTCCCCCTCGGTCCTGCTCTCGCCTCCATCCTTCGGCGTTTC
CCCATGATATTGTCGTTTACTGCTTCTCGTCTTCATGCCAGCCTTGACGT
CCTCACAGACGACTTAAAATGTTCTTCAGCAGAAATAGCATCCATCCTTC
AAAAACACCCACAGCTACTTGGGTATCGTCCCGTGGCTGTTCGTGAAAAG
TTGGCTGCGCTTCAAGAAATTTATGGGTTGTCGGAAGTGGAAGAGGGGAA
AAAGGCCGTGTTGAGATCCCCGGCGTTGTTGTCGTACAGTCTAGACACGA
GGCTTAGACCACGGTTGCTGAGGGCAGCAGAGACAGGAGTGGAGTTGGAG
AGGGCGGTGTCGTGGTTACCCTTGACGGAGGAGAAGTTTGAGGAGAGGGT
GGTGAAGAGCAGTACGGAGGCGATTTCTTTGGCTAACACCCCTCTGTTGC
GACACCGATCGAATGCTAAGTTGCGGAAGTTGTTGAGGACGACCAAGAGG
AGTAGTAGTAGTGATAGTGGTGGTAGTAGTAGTAGTAGTAGTGGTGGTAG
TAGTAGTAGTAGTAGTAGTGGTAGTAGTAGTAGTAGTGGCGGTAGTAGGT
AG
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protein sequence of NO11G01920.1

>NO11G01920.1-protein ID=NO11G01920.1-protein|Name=NO11G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MLLQGILLFHALVALPRPAFGFGSPILFSSSMMHKLRSRNAGFAIAVKKR
LVKDDDNYNSSDDILANSLLVGPLPIPLPTKMATKSNKVANTATEDDEAD
EDEMEKDGNTSKAAVPVPEGQDTLWENFIEIFDPVVATAPFLPSSSSSNS
NSSASTTSARFYMNKAVPYFFLRDELGINENKMLRISLDNPQVLALSVER
SLRPKVAWLRSALGLTQAEAATLVGGSPGMLLLSVEDNLAPKLSWLQDEL
GFETEERRKLVMRCPQVLTTSPGSLLMKLAFLKDDVGMSRGEVYRAVRSM
PSLLVLSLDTLVDKAEYLTAEFGVTQQDVGSLLTRAPALFFQSLEAGLKP
KARFLRRDLGLDTDAMAFLLRRMPRALNYNIVSSGRPLLQYLTRGPFNFT
REEVARIILRSPSLLSTDVTSPRFGLLLESLQQATNLPLGPALASILRRF
PMILSFTASRLHASLDVLTDDLKCSSAEIASILQKHPQLLGYRPVAVREK
LAALQEIYGLSEVEEGKKAVLRSPALLSYSLDTRLRPRLLRAAETGVELE
RAVSWLPLTEEKFEERVVKSSTEAISLANTPLLRHRSNAKLRKLLRTTKR
SSSSDSGGSSSSSSGGSSSSSSSGSSSSSGGSR*
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Synonyms
Publications