NO11G01910, NO11G01910 (gene) Nannochloropsis oceanica

Overview
NameNO11G01910
Unique NameNO11G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3886
Alignment locationchr11:625822..629707 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:625822..629707 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036361SAP_dom_sf
IPR003034SAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO11G01910 vs. NCBI_GenBank
Match: EWM25009.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:    1 MDLDIKKLKVDQLREELGKRGLDTKGKKDELQERLQNAIDKEMLDAIDEE 51
            MDLD+KKLKVDQLREEL KRGLDTKGKKDELQERLQNAID EMLDAIDEE
Sbjct:    1 MDLDLKKLKVDQLREELSKRGLDTKGKKDELQERLQNAIDTEMLDAIDEE 50
The following BLAST results are available for this feature:
BLAST of NO11G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25009.11.100e-1494.00DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002070NSK002070Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01910.1NO11G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591331gene_5081Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g1gene5474Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01910.1NO11G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01910 ID=NO11G01910|Name=NO11G01910|organism=Nannochloropsis oceanica|type=gene|length=3886bp
CTTTACCTTTGTACATTTCTTTCTTCCTTACTTTATATCTACTTGCTTGT
AGCTTTCGATCTGGTACTTTCATCGTTGCTACCACTACTTCTACCTACTA
CCGCCACTACTACTACTACTACCACTACTACTACTACTACTACTACCACC
ACTACTACTACTACTACTACCACCACTATCACTACTACTACTCCTCTTGG
TCGTCCTCAACAACTTCCGCAACTTAGCATTCGATCGGTGTCGCAACAGA
GGGGTGTTAGCCAAAGAAATCGCCTCCGTACTGCTCTTCACCACCCTCTC
CTCAAACTTCTCCTCCGTCAAGGGTAACCACGACACCGCCCTCTCCAACT
CCACTCCTGTCTCTGCTGCCCTCAGCAACCGTGGTCTAAGCCTCGTGTCT
AGACTGTACGACAACAACGCCGGGGATCTCAACACGGCCTTTTTCCCCTC
TTCCACTTCCGACAACCCATAAATTTCTTGAAGCGCAGCCAACTTTTCAC
GAACAGCCACGGGACGATACCCAAGTAGCTGTGGGTGTTTTTGAAGGATG
GATGCTATTTCTGCTGAAGAACATTTTAAGTCGTCTGTGAGGACGTCAAG
GCTGGCATGAAGACGAGAAGCAGTAAACGACAATATCATGGGGAAACGCC
GAAGGATGGAGGCGAGAGCAGGACCGAGGGGGAGGTTGGTTGCTTGTTGC
AGACTTTCAAGGAGGAGGCCGAAGCGCGGGGAGGTGACGTCAGTGGAGAG
GAGGGAGGGGGACCGGAGAATGATGCGGGCGACTTCTTCACGAGTGAAAT
TGAACGGGCCACGGGTAAGGTATTGCAGCAGGGGGCGGCCGCTGGAGACA
ATATTGTAGTTCAATGCGCGGGGCATCCGTCGCAGTAGGAAGGCCATGGC
ATCCGTATCGAGGCCGAGGTCACGACGGAGGAAGCGGGCCTTAGGTTTCA
ATCCAGCTTCGAGGGATTGGAAGAAGAGGGCGGGCGCGCGGGTGAGCAGA
GACCCTACGTCCTGTTGAGTGACTCCGAACTCTGCAGTGAGGTATTCGGC
TTTGTCGACGAGGGTGTCGAGAGAGAGGACGAGGAGTGAAGGCATGGAGC
GTACAGCCCTGTAGACCTCGCCACGGGACATGCCGACGTCGTCCTTTAGG
AAGGCCAGTTTCATGAGCAGGGAGCCTGGGGAAGTTGTCAAGACCTGCGG
GCAGCGCATCACCAGCTTGCGTCTCTCTTCTGTTTCGAAACCTAATTCAT
CTTGGAGCCACGAGAGTTTTGGTGCAAGATTATCTTCGACGCTTAGCAAA
AGCATACCCGGACTCCCCCCTACCAGGGTAGCCGCCTCCGCTTGTGTCAA
CCCAAGAGCCGAGCGAAGCCAAGCGACCTTAGGACGGAGGCTTCGTTCCA
CGCTCAAGGCGAGAACTTGTGGGTTATCCAAGGAGATGCGCAACATTTTG
TTTTCGTTGATACCCAGCTCATCGCGGAGGAAGAAGTAAGGGACGGCCTT
GTTCATGTAGAAGCGGGCAGAAGTGGTGGAGGCGGAAGAGTTGGAGTTGG
AGGAGGAGGAGGAAGGGAGAAAAGGAGCCGTTGCTACCACGGGGTCAAAT
ATTTCAATGAAATTCTCCCATAGAGTGTCTTGGCCTTCTGGAACAGGGAC
TGCAGCTTTGCTTGTATTTCCATCTTTTTCCATCTCATCCTCGTCTGCCT
CGTCGTCCTCAGTAGCAGTGTTCGCGACCTTGTTGCTCTTTGTAGCCATC
TTAGTAGGCAGAGGGATCGGCAACGGACCCACCAACAAAGAATTTGCAAG
AATATCATCACTACTATTATAATTGTCGTCATCCTTGACAAGCCGCTTCT
TGACAGCAATGGCAAACCCTGCATTCCTCGAGCGCAGCTTGTGCATCATG
GACGACGAGAAAAGAATGGGCGAGCCGAAGCCGAAGGCAGGCCGCGGCAA
TGCGACCAGGGCGTGAAAGAGGAGTATACCTTGAAGGAGCATACTCCCCG
TTGTCGTGGTTGTCCTCACCGTGGTGTTGGATTAGGCGGCATGGTGCTAT
ATGAAGATGGCGCGAAACGAAGCGCAGGGCAAGCTTATCGTACAGCTACT
CGACAAGGGATAAAGTCCAAGCACTCGGTGTTCATTTCGTGCCAGTACCC
TTGTTGGCCGTGCCTGGGGTGTTGTTTTGGAGGCGAGATACGGGTCTTTG
GTGGTCAAAGGTGACTTTATGGCTCGTTGGCCCTTTCTCCCCTACTATAA
TTGCATGATGGTTCGCCATCATGCCCCAGCCTAGTGAAGCACAACACATG
CAAAGATCATCCCACCCACAATCTCCTCTCTACCCATGCACGAAACAAAG
AAGATTATTTTTGTTGCCTCAGCTACGCTTCAGCCAGCCATCTAGGGGAG
CAAATCACACTGCCAAGGTTCTTCTTCGCCATCAACAAAAGCACAAGCGA
TCATGGACCTGGACATCAAGAAACTTAAAGTGGACCAGCTTCGCGAGGAG
CTGGGCAAGCGCGGCTTGGACACCAAGGGCAAGAAGGACGAGCTCCAGGA
ACGCCTCCAAAATGCAATCGACAAAGAGATGCTGGACGCGATTGACGAGG
AAGACGAGGTCGGCGTGCCTCCTCCTCCGGCTCCCACGTCTACCTCTCCG
CCTCCACCATCTCCCGCTCCGGTTCCAGTCTTACCATCCACGTCCGTCAG
CAAGCTCACCGCAGCTTCGGCCAAGCCCGCCGCTCATTCTCTGACGCGCA
TGGCACATGCTGTCCCTGCTGCGCCCGTTGTCCCTCCTGCTCCGGTTGCC
CCTGCTCCCGCTGCCGGAGAAGGCATTGTCAAAAAGGGAGCGGAAACAGC
CGAGACCGACGAAGAAAAGAAGAGGCGGCGTGCGGAGCGATTTGGTATTC
CCATTTCAGAGGAGGAGAAGAAGAAGGCGCGCGCCGAGCGTTTTGGTCTC
GTCACGCCCGCTGCTGGTAATCCAGCTTCGGGCGGCCATGGTAGGGCAGG
TGGTGCGGGGAAAGCTGTTTTACCTGCAAAGGCTGCATCCAAAGCAGGTC
CTTTGGAAGGAATACCTGTTTTGGATGCTGAGGAGGAGGTGCGACGGCGG
GCGAGAGCGGCCAGGTTTGGGATTCCTGATCCGAAGCTGGAGGAGGAAAA
AAAAGCGGAGCGGGCGAAGCGATTTGCGGATCCAGCCAAGGCGGAGGAGG
AGGCCAAgtatgtattctgagttgcttctgggttaaggatcagggaggga
gagaaaggggagaaagagggggtgatgtattgatcgttaaaaaaatatat
aagattgggagacaggaagaggggtaactcactatatcagctaacatttt
tctcctccccctttttattaattcattcagGAAAAAGGCACGGATGGAGA
GATTTGCAGGAACACCGTCAGCTTGAATGGGTTCCAGAAGGTGACAGAGG
AACATCAGAAATTGAATGATGAGGCGCATTCGCGCACTTGTCGACAAGTA
AAAACAGAAAGGGTACGTCTGTTGTGCGTGCGCGTTAGTCATCAACCAGA
CAAAGAAGATAAGAAGGAAAAATCTTTCTTGTGGGGTCTATCCTCGCATG
TGTGTTTGAAATGAGTGTGTGTGTGGAAATTACTGAGTGGGAGGACAACG
AGGGATGAAAAAGAAGTGAGATGGGCACGGGACATTGGCAAGGACGACAC
CGGGAATTAAGAGAAGCTGGAGATAAAATAAATGGTTTCGAAAGCGACGA
CGGGTTACATTGACATCTAAAGACATGATAAAAGACGGAAAGGTCATCCC
AAAAGAAGAAATTGTGATGCATTTCGATGCCAACACACGGAAGGAGAGAA
TAGAAGATAACCATAAAACAATAATAATAATTGCGA
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protein sequence of NO11G01910.1

>NO11G01910.1-protein ID=NO11G01910.1-protein|Name=NO11G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MDLDIKKLKVDQLREELGKRGLDTKGKKDELQERLQNAIDKEMLDAIDEE
DEVGVPPPPAPTSTSPPPPSPAPVPVLPSTSVSKLTAASAKPAAHSLTRM
AHAVPAAPVVPPAPVAPAPAAGEGIVKKGAETAETDEEKKRRRAERFGIP
ISEEEKKKARAERFGLVTPAAGNPASGGHGRAGGAGKAVLPAKAASKAGP
LEGIPVLDAEEEVRRRARAARFGIPDPKLEEEKKAERAKRFADPAKAEEE
AKKKARMERFAGTPSA*
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Synonyms
Publications