NO11G01860, NO11G01860 (gene) Nannochloropsis oceanica

Overview
NameNO11G01860
Unique NameNO11G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1711
Alignment locationchr11:612239..613949 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:612239..613949 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01860 vs. NCBI_GenBank
Match: EWM25052.1 (hypothetical protein Naga_100049g7 [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 6.500e-87
Identity = 181/234 (77.35%), Postives = 200/234 (85.47%), Query Frame = 0 
Query:   98 VATRRDVFCLVLL-LVAVASAFVRQPALTSPCQQQKLQCSSSTQ-QQHTTRMRPLMAKG-GPEMGRKQAKRELMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMPIAAFKADNVAKGVVDASLQEGMAATFFKGVYKAQVETAVSKAIYDNEKRLREQGQSMHATLKNAPANQIIWGFKILYKPLQDKVGKTQQPTIVTKDMAKSLFDKFKDGVSSKVQETFSLQLEEPKP 329
            +A RR + C +LL LVAV  AFVR PA  S  Q +K Q     +     + ++PL AKG GPE GRKQAKR+LMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMP+AAFKADNVAKGVVDASLQEG+AA  FKGVYKAQVETAVSKAI+DNE+RLREQGQ+MHATLKNAP +QIIWGFKILYKPLQDK GKTQQPT+VTKDM+KSLFDKFKD VS+KVQETFSL+LEEP P
Sbjct:    1 MAIRRGIACSILLFLVAVTHAFVR-PAAPSSLQVRKQQHPGPPRGHPEHSGLKPLQAKGSGPEFGRKQAKRDLMERQRAMAEFNAEIETTPVFQVFAATQKMKGLWMPVAAFKADNVAKGVVDASLQEGIAANMFKGVYKAQVETAVSKAIFDNERRLREQGQAMHATLKNAPRDQIIWGFKILYKPLQDKFGKTQQPTVVTKDMSKSLFDKFKDSVSNKVQETFSLKLEEPAP 233
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BLAST of NO11G01860 vs. NCBI_GenBank
Match: XP_005764480.1 (hypothetical protein EMIHUDRAFT_311445 [Emiliania huxleyi CCMP1516] >XP_005765157.1 hypothetical protein EMIHUDRAFT_371257 [Emiliania huxleyi CCMP1516] >XP_005793525.1 hypothetical protein EMIHUDRAFT_372733 [Emiliania huxleyi CCMP1516] >EOD12051.1 hypothetical protein EMIHUDRAFT_311445 [Emiliania huxleyi CCMP1516] >EOD12728.1 hypothetical protein EMIHUDRAFT_371257 [Emiliania huxleyi CCMP1516] >EOD41096.1 hypothetical protein EMIHUDRAFT_372733 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 38/133 (28.57%), Postives = 76/133 (57.14%), Query Frame = 0 
Query:  171 QRAMAEFNAEIETTPVFQVFAATQKMKGLWMPIAAFKADNVAKGVVDASLQEGMAATFFKGVYKAQVETAVSKAIYDNEKRLREQGQSMHATLKNAPANQIIWGFKILYKPLQDKVGKTQQP----TIVTKDM 300
            Q+   E +A  + TP+F ++A   K + +W P++  + D  +KG+V A L   +A    KGV+K +++  V+++I+++E+RL +  +  +  +K  P+  + WG+KI+   +   V K + P     +VTK++
Sbjct:   61 QQEFREPDAPPDGTPLFYLYARNPKTRVMWYPVSVLRGDGQSKGLVGAWLGSPLA----KGVFKERLDEGVARSIFESERRLTDMARQQYPAIKKLPS--LEWGYKIVATGVSTAVAKGELPEQKVQMVTKEL 187
The following BLAST results are available for this feature:
BLAST of NO11G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25052.16.500e-8777.35hypothetical protein Naga_100049g7 [Nannochloropsi... [more]
XP_005764480.11.200e-828.57hypothetical protein EMIHUDRAFT_311445 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002077NSK002077Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01860.1NO11G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591318gene_5074Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g7gene5469Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01860.1NO11G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01860 ID=NO11G01860|Name=NO11G01860|organism=Nannochloropsis oceanica|type=gene|length=1711bp
CGGAGGGGCATGGCCCCGGGAAATGAGAAGGCCATCATGATACCATCTAG
TTATGGTGGCGCGAGAAGGGCCCGGCGCGGGACTGCTGGAGAGAGATGCT
GCCGTATCTGTCTCTGTTGTGTGCATTTTTATCAGCCATTTGTCGCATCG
CCATCAAGTGCTCCACACATACACAGGCGCAAGGCACTATTACAACCATC
ACAATGAAGGATCCCTTGCTCAATCCCGGCCATTTCTTTGCCTTCCTCCT
GCCAGCATGTCCAATCAGGCCACGGCAGCTCTCGAACAAGATGATGACGA
CGACAGGCAAGCGAACACACCAACTCATTCCGACTCGTCTCCGCATACAC
AGGACCAAACCCCCTATTTTACCAGCTGGAAGCATGGTAGCTACCAGAAG
AGATGTTTTTTGCCTGGTTCTTCTCCTCGTCGCCGTGGCCAGTGCTTTCG
TGCGACAACCCGCCCTCACCTCCCCCTGCCAGCAGCAGAAGCTTCAGTGC
TCGAGCTCCACGCAGCAACAACACACGACGCGCATGCGGCCACTTATGGC
GAAGGGCGGTCCTGAGATGGGACGCAAGCAAGCCAAACGTGAGCTGATGG
AACGACAACGGGCCATGGCGGAGTTCAACGCCGAGATCGAGACAACACCT
GTGTTTCAGGTCTTCGCGGCCACGCAGAAGATGAAGGGGTTGTGGATGCC
CATTGCTGCTTTTAAGGCCGATAATGTTGCAAAGGGCGTGGTAGATGCCT
CCTTGCAAGAAGGCATGGCCGCCACTTTTTTCAAGGGTGTGTACAAAGCA
CAGGTGGAGACTGCCGTGTCCAAGGCGATTTACGATAACGAGAAGCGTCT
ACGAGAGCAAGGGCAGTCCATGCATGCTACTTTGAAGAACGCCCCAGCGA
ATCAGATTATTTGGGGATTCAAGATTTTGTACAAGCCTTTGCAGGATAAG
gtgggtattgtttctggtattgatatgggcggagggatgagggagggatt
tgggagggatgagggaggggtaccgttcgtctggtagaagacttcatgct
gcacagccttacacatcttttttacgaaattctttccatgatgtacagGT
CGGCAAGACGCAACAGCCCACGATTGTGACCAAGGACATGGCTAAAAGCC
TGTTTGACAAGgtaaggcgaagtttgaaaaagccaggaggagagaacgag
ggatgccctgcgaaagccccctctcacattttttcccctgtcgaacgaat
tacagTTTAAGGACGGTGTCTCCAGCAAGGTTCAAGAAACGTTCAGCCTG
CAATTGGAGGAGCCCAAGCCCGAAACACCTCCCCCTGCTGCGGGAGGAAA
AAAGAAGAAGGCGAAGAAGGAGGGAAACAACTCCGCGGCAGCCGCATCCA
AGACCGAGTAAGTAGGATAGAGGAACTGCAGCGACTTAAAAACAATTTTA
GAAATCACACAGAGAGAGTCTGAAAGGGAGAGTAGACGTGTGCTTGGGGC
AGGATAGGGTCATTCATTGCATGTTTTTCGAGGGACGGTATGTGGCATAG
GAAAAGATAGGAGGGCTGGGCAAGCGAGGAAGGATTGGAAGGGTTCTTCA
AAATGAAAAAAAAACATAACGACGTCAGCCTTTCTCCATGGACCACGTCA
ATCGGCCAGAGGATGCGACGAGTTCCCCCAAAAAAAGAAGCAACCAGCAC
TTAACACCAAA
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protein sequence of NO11G01860.1

>NO11G01860.1-protein ID=NO11G01860.1-protein|Name=NO11G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLPYLSLLCAFLSAICRIAIKCSTHTQAQGTITTITMKDPLLNPGHFFAF
LLPACPIRPRQLSNKMMTTTGKRTHQLIPTRLRIHRTKPPILPAGSMVAT
RRDVFCLVLLLVAVASAFVRQPALTSPCQQQKLQCSSSTQQQHTTRMRPL
MAKGGPEMGRKQAKRELMERQRAMAEFNAEIETTPVFQVFAATQKMKGLW
MPIAAFKADNVAKGVVDASLQEGMAATFFKGVYKAQVETAVSKAIYDNEK
RLREQGQSMHATLKNAPANQIIWGFKILYKPLQDKVGKTQQPTIVTKDMA
KSLFDKFKDGVSSKVQETFSLQLEEPKPETPPPAAGGKKKKAKKEGNNSA
AAASKTE*
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Synonyms
Publications