NO11G01620, NO11G01620 (gene) Nannochloropsis oceanica

Overview
NameNO11G01620
Unique NameNO11G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1172
Alignment locationchr11:537104..538275 -

Link to JBrowse

Properties
Property NameValue
DescriptionEthylmalonic encephalopathy 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:537104..538275 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR005939Beta-lactam_hydrolase-like
Homology
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BLAST of NO11G01620 vs. NCBI_GenBank
Match: XP_005853535.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526] >EKU22823.1 ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-7
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0 
Query:   81 AVTADQPASGIHVGKTIGSKKEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDAAGIEMKHYPLKV-DSLTASDADNLVEILTGLPRPTYIMCKSGARASALKALYLARLADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR 240
            A T    A+ I     +G + E  A+  K+K++LYLATD         D+     GF  L+      G+  +H P+ V D L+   A + ++ L  LP P  ++C SG RASA++   L +  +    KD       +++  ++K P+ KDWVL+  A R
Sbjct:   52 ASTMTVTAADITTAGKLG-EAETSALSDKYKSVLYLATDKGA------DKGIEPNGFASLR------GLTTRHLPVDVKDGLSLQLATDALQALDELPAPALVVCSSGGRASAVQC--LRKATEEGWTKDQTLAYALEMKLPFVKNPSLKDWVLATVAAR 196
[Close]
BLAST of NO11G01620 vs. NCBI_GenBank
Match: EWM29876.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana])

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-7
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0 
Query:   81 AVTADQPASGIHVGKTIGSKKEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDAAGIEMKHYPLKV-DSLTASDADNLVEILTGLPRPTYIMCKSGARASALKALYLARLADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR 240
            A T    A+ I     +G + E  A+  K+K++LYLATD         D+     GF  L+      G+  +H P+ V D L+   A + ++ L  LP P  ++C SG RASA++   L +  +    KD       +++  ++K P+ KDWVL+  A R
Sbjct:   72 ASTMTVTAADITTAGKLG-EAETSALSDKYKSVLYLATDKGA------DKGIEPNGFASLR------GLTTRHLPVDVKDGLSLQLATDALQALDELPAPALVVCSSGGRASAVQC--LRKATEEGWTKDQTLAYALEMKLPFVKNPSLKDWVLATVAAR 216
The following BLAST results are available for this feature:
BLAST of NO11G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853535.13.400e-730.63ethylmalonic encephalopathy 1 [Nannochloropsis gad... [more]
EWM29876.13.400e-730.63ethylmalonic encephalopathy 1 [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01620.1NO11G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566314gene_5047Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01620.1NO11G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01620 ID=NO11G01620|Name=NO11G01620|organism=Nannochloropsis oceanica|type=gene|length=1172bp
ATGTCTCACATGTGGGCCTTCCTTCTGGCGCTGGGTAGCGTCGTCCTGAG
CACAAATGCCTTCGTGACATCTTCGTATCAGgtaagccgcgtcctcttgt
gatagtcggtcgcacaagacatttatcctcaccctatggtccatgccccc
atattatatatgtacagACGCCAACGAGGAGCTTGCACACGGCGGAGAGC
AAGAACACAAAAACGGTGACGACGATGCAAGCAGAGTCCATGTCACGTGC
GGATGCCTTATTGACTGTAGGTACGGCCTTCTTCGGTGCGGCAGCCGTCG
TGACGGGGACCTCTGGCCCGGCGCATGCCGTCACCGCAGACCAGCCTGCC
AGCGGCATCCATGTTGGAAAAACTATTGGGAGCAAAAAAGAGGCACTCGC
CATCATCCGAAAACACAAAAACCTCTTATATCTGGCTACAGgtgagtaaa
tggcatttcagatgtgagtgtgcggtacacgtctggtgactgcctcgcat
catccatgacctgaacccacatttgtagtgcccttcccttctttcgtgca
ccccttttctctaagcaaatgtgttcactgtcgcgaagccttcactctcg
ttcatgcaattatccctccaatctttgattttgcctttgatgccgccacc
ccctattttgccactttcaattcatcggtccaatcgcatgtccccccccc
cactcccgaatgactagATGCCAATGGCGACATCGCCTATAAGAACGACG
AGGATGCGACCAAGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCG
GCAGGAATAGAGATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGC
ATCCGATGCGGACAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCA
CGTACATCATGTGCAAgtaagtgaagcgtagaaagaaaggggtggaatcg
attgtgggatcttccatgtaattatccgtcttatgtgcccgcgatctctg
gtacagGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTACCTCGCCC
GTTTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACATTGGAACC
GACTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGACTGGGTTCT
TTCCAATAGCGCAGTGCGATGA
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protein sequence of NO11G01620.1

>NO11G01620.1-protein ID=NO11G01620.1-protein|Name=NO11G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSHMWAFLLALGSVVLSTNAFVTSSYQTPTRSLHTAESKNTKTVTTMQAE
SMSRADALLTVGTAFFGAAAVVTGTSGPAHAVTADQPASGIHVGKTIGSK
KEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDAAGIE
MKHYPLKVDSLTASDADNLVEILTGLPRPTYIMCKSGARASALKALYLAR
LADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR*
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Synonyms
Publications