NO11G01600, NO11G01600 (gene) Nannochloropsis oceanica

Overview
NameNO11G01600
Unique NameNO11G01600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1541
Alignment locationchr11:531534..533074 -

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Properties
Property NameValue
DescriptionHistone deacetylases (HDA1 superfamily)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:531534..533074 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0055085transmembrane transport
GO:0016575histone deacetylation
Vocabulary: Molecular Function
TermDefinition
GO:0015267channel activity
GO:0016787hydrolase activity
GO:0015267channel activity
GO:0004407histone deacetylase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023271Aquaporin-like
IPR000425MIP
Homology
BLAST of NO11G01600 vs. NCBI_GenBank
Match: XP_005718227.1 (Histone deacetylases (HDA1 superfamily) [Chondrus crispus] >CDF38343.1 Histone deacetylases (HDA1 superfamily) [Chondrus crispus])

HSP 1 Score: 214.9 bits (546), Expect = 4.100e-52
Identity = 115/274 (41.97%), Postives = 163/274 (59.49%), Query Frame = 0
Query:   17 RKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLR 291
            R   +L  C+AE  GT  +V FG+G    A+L N    L+  A +WG  + L I  TAS+S AHLNPAVS+A+A+FR  +F+ R  + Y  +Q +G  +G      ++      +EQ+  IVRGS  S+     +GE+FP+P + P  +   A                GT +LMF+ILA+ D  Q  +++KE+ P  IG ++  ++++ AP T+A  NPARDFG RLVA M G+GK+A+PGPRN  WVYI  P +GA +GAL +DLLIA GLR
Sbjct:  974 RTAALLHQCVAECIGTMFIVVFGVGSVCVAILTNTSSGLWQIATVWGFGVALAILATASVSGAHLNPAVSLAMALFRPNDFSFRKLIPYWCAQYLGGVLGGAFNLMIYGPLFRYHEQQGGIVRGSAESVLTARAFGEYFPDPGLGPTIISPEAW---------------GTGILMFVILALTDSRQKIIQNKEMLPFYIGFTVAVLITLYAPLTQAGWNPARDFGPRLVAAMAGWGKIAIPGPRNGFWVYIVGPKIGAPIGALLYDLLIARGLR 1232          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: PCI20594.1 (aquaporin [SAR202 cluster bacterium])

HSP 1 Score: 212.2 bits (539), Expect = 2.700e-51
Identity = 116/269 (43.12%), Postives = 162/269 (60.22%), Query Frame = 0
Query:   21 VLTSCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGL 290
            +L +C AE  GT+LLV FG G  A AVL  A   ++  A +WG  +T+ IYVTA++S AHLNPAVS+  AIFR +EF     + Y  SQ  GA + AL V  L+  F+  +E E  +VRG+  S    M++GE+FPNPA+        +L+   S   A  +E  GT +L+ +I A+VDR   +L  K L+P  IG ++  ++S+ AP T+A  NPARDFG RLVA   G+  +A+PGP    W YI  P++G  +GA  ++ LI PGL
Sbjct:   19 MLRACGAEVVGTYLLVVFGTGAVAAAVLTGAQSGIWQVAVVWGFGITIAIYVTAAVSGAHLNPAVSLTFAIFRRREFPYTRLLPYWTSQLTGAVLAALTVLWLYGPFIARFESEMGLVRGAPGSQHSAMVFGEYFPNPALFGTGPDAQSLI---SPLGAAVVEGFGTAILLLVIFALVDRRNASLPTKYLSPFFIGFTVAVLISLFAPLTQAGWNPARDFGPRLVAYFAGWESIAIPGPSGGFWAYIIGPLVGGPLGAAVYEFLIRPGL 284          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: OSX73708.1 (hypothetical protein BU14_0331s0024 [Porphyra umbilicalis])

HSP 1 Score: 207.6 bits (527), Expect = 6.600e-50
Identity = 114/256 (44.53%), Postives = 155/256 (60.55%), Query Frame = 0
Query:   34 LLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGL 290
            ++V FG+G    A L ++   L+  A +WG  + L I  TAS+S AHLNPAVS+A A+FR  +F  +  + Y  +Q  G  +G  L   LF     AYE    IVRG   S+     +GE+FPNP     TV  SA+ P     HA A+E  GT +LMF+ILAI+D  Q  +  KE+ P  IG ++  ++S+ AP T+A  NPARDFG R+VA + G+G +A+PGPRN  WV+I  P +GA +GAL +D LIAPGL
Sbjct:    1 MIVVFGVGVVCTATLTDSAAGLWQVATVWGFGVALAILCTASVSGAHLNPAVSLAFALFRPDDFPWKKLLPYWAAQYAGGVLGGALNLALFGPLFAAYEAREGIVRGEGGSVVTAAAFGEYFPNPG-FAKTVPPSAVSPA----HALAVEAWGTGVLMFVILAIIDGRQKLMGGKEMIPFYIGFTVAVLISLYAPLTQAGWNPARDFGPRIVAALAGWGSIAIPGPRNGFWVFIVGPKIGAPLGALAYDTLIAPGL 251          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: PHX62812.1 (aquaporin [Planctomycetaceae bacterium])

HSP 1 Score: 203.8 bits (517), Expect = 9.500e-49
Identity = 113/277 (40.79%), Postives = 164/277 (59.21%), Query Frame = 0
Query:   14 EKYRKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVG----NSALLPGGSIEH--AFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMW-VYIFAPILGALVGALFHDL 284
            +K  K+ + +SC AEA GTFLLVF G G   +AVL  +   L+  A +WG+ +TL IY T  IS AHLNPA++IA A +    F  R    YI SQ +GA + A  +F ++  +++  E E  I+R    S    M YGE+FPNP  + +T G    +  +     + H  AF  E +GT +L  +I A+ D + +      LAPL IGL++  ++SV+AP T+AC NPARDFG RLV+  +G+G +A+PGPR   + +YI AP +GA++G   + L
Sbjct:   10 DKKIKSGLFSSCFAEALGTFLLVFIGCGVVHSAVLTGSQSGLWQVAIVWGIGVTLAIYCTNHISGAHLNPAMTIAFAFWGM--FPLRKVFPYIASQVLGAMVAAFFLFVIYQPYIIQREIERGIIRSEAGSELTAMCYGEYFPNPGFLSNTEGLYDPSKRISFDAKVSHFNAFLAEVLGTMILACVIFALTDSSNSKAPESNLAPLFIGLTVAVLISVIAPLTQACFNPARDFGPRLVSYFLGWGSIAIPGPRGGFFTIYILAPSVGAVLGGGLYKL 284          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: OIO95952.1 (hypothetical protein AUJ96_25675 [Armatimonadetes bacterium CG2_30_66_41] >PIU92335.1 hypothetical protein COS65_18450 [Armatimonadetes bacterium CG06_land_8_20_14_3_00_66_21] >PIX46516.1 hypothetical protein COZ57_11625 [Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20] >PJB69143.1 hypothetical protein CO096_13560 [Armatimonadetes bacterium CG_4_9_14_3_um_filter_66_14])

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-47
Identity = 112/262 (42.75%), Postives = 157/262 (59.92%), Query Frame = 0
Query:   28 EATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDR-NQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRN-EMWVYIFAPILGALVGALFHDLLIAP 288
            E  G+FLLVFFG G  A AVL  A   L+  A +WG A+ L IY   ++S AHLNPAVS+A+A+FR  EF  R    Y+ +Q +G  + +LL+ G+F      +E ++ +VRG   S    M +GE+FPNPA+      ++  L   S+   F  E VGT LL+F I+A+ D+ N+         P +IG  +  I+S+VAP T+A +NP RDF  RLV+   G+G +ALPGPR  E WVYI AP+LG ++GA  +  L+ P
Sbjct:   13 ELVGSFLLVFFGTGSVAVAVLTGAHEGLWQVATVWGFAIGLTIYAVGAVSGAHLNPAVSVAMAVFRGHEFPWRRVGPYVAAQMVGGILASLLLLGMFGATCEHFETQHQLVRGQPGSQLSAMWFGEYFPNPAVYG---TDATALSQVSVVGGFFGELVGTALLLFFIMALTDKCNKLAPLETNFHPFLIGFVVACIISIVAPLTQAGLNPMRDFAPRLVSYFAGWGAIALPGPRGCEWWVYIVAPLLGGILGAFVYQTLVLP 271          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: PIZ43987.1 (hypothetical protein COY42_14910, partial [Armatimonadetes bacterium CG_4_10_14_0_8_um_filter_66_14])

HSP 1 Score: 199.5 bits (506), Expect = 1.800e-47
Identity = 112/262 (42.75%), Postives = 157/262 (59.92%), Query Frame = 0
Query:   28 EATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDR-NQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRN-EMWVYIFAPILGALVGALFHDLLIAP 288
            E  G+FLLVFFG G  A AVL  A   L+  A +WG A+ L IY   ++S AHLNPAVS+A+A+FR  EF  R    Y+ +Q +G  + +LL+ G+F      +E ++ +VRG   S    M +GE+FPNPA+      ++  L   S+   F  E VGT LL+F I+A+ D+ N+         P +IG  +  I+S+VAP T+A +NP RDF  RLV+   G+G +ALPGPR  E WVYI AP+LG ++GA  +  L+ P
Sbjct:   13 ELVGSFLLVFFGTGSVAVAVLTGAHEGLWQVATVWGFAIGLTIYAVGAVSGAHLNPAVSVAMAVFRGHEFPWRRVGPYVAAQMVGGILASLLLLGMFGATCEHFETQHQLVRGQPGSQLSAMWFGEYFPNPAVYG---TDATALSQVSVVGGFFGELVGTALLLFFIMALTDKCNKLAPLETNFHPFLIGFVVACIISIVAPLTQAGLNPMRDFAPRLVSYFAGWGAIALPGPRGCEWWVYIVAPLLGGILGAFVYQTLVLP 271          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: PKN81192.1 (aquaporin [Chloroflexi bacterium HGW-Chloroflexi-9])

HSP 1 Score: 198.4 bits (503), Expect = 4.000e-47
Identity = 111/268 (41.42%), Postives = 160/268 (59.70%), Query Frame = 0
Query:   24 SCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLRR 292
            +C+AEA GTFLLV FG G  A AVL  A + ++  A +WG  +TL I     +S AHLNPAV++A+A+ R + F     + Y  +Q  GA +    V   F+ FL  +E E+ I RG+  S    M++GE+FPNPA+        AL+   S   A  +E  GT +L+F+I A+ +  +N  +   LAP  IG ++  ++S+ AP+T+A  NPARD G RLVA   G+G++A+PGP+   WVYI  P++G LVG   +D L+ PGL R
Sbjct:    9 ACVAEAVGTFLLVLFGTGSVAAAVLTGAQVGVWQVAAVWGFGVTLAIXXXXXVSGAHLNPAVTLAVAVLRRESFPRSRILPYWGAQLAGAVLAGTAVLVTFSPFLDRFEAEHGIDRGAAGSEASAMVFGEYFPNPAMFGTGSEAEALI---SPLQAVGIEAFGTAILVFMIFALTE-PRNGARPAWLAPFFIGFTVAVLISLFAPATQAGWNPARDLGPRLVAFAAGWGEIAIPGPQGGFWVYIAGPLVGGLVGGAAYDRLVRPGLTR 272          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: AMV38268.1 (Glycerol uptake facilitator protein [Planctomyces sp. SH-PL62])

HSP 1 Score: 198.0 bits (502), Expect = 5.200e-47
Identity = 115/270 (42.59%), Postives = 159/270 (58.89%), Query Frame = 0
Query:   25 CLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGN---------SALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLI 286
            CLAE  GTF+L+F GLG    +VL  A   L+  A +WG A+TL IYV   +S AH+NPA+S ALA +    F  R  V Y+++QT GAF  A L+F LFN +L   E+E  + RG   S    M YGEFFP+P  + ++ G          +A +P  S   AF  E VGT LL  +++A+ D   +      +AP  IGL++ ++VS+  P T+AC NPARD G RL A++ G+G  ALP     + VY+ APILGA++GA  +D L+
Sbjct:   12 CLAEFAGTFILIFLGLGVVHTSVLTGAQSGLWQVAVVWGAAVTLAIYVVGGVSGAHINPAISAALAAW--GRFPWREVVPYVLAQTAGAFAAAALLFVLFNPYLKEREREKGVERGGPGSEITAMCYGEFFPSPGPLSNSEGPYSLDEHQRINAFVPESS---AFLGEVVGTMLLAMVVVAVTDPRNSERPAAGMAPAFIGLTVAALVSIFGPLTQACFNPARDVGPRLFAMLAGWGTAALPRGTGVVTVYVLAPILGAIIGAGLYDRLL 276          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: WP_082858566.1 (aquaporin family protein [Planctomyces sp. SH-PL62])

HSP 1 Score: 198.0 bits (502), Expect = 5.200e-47
Identity = 115/270 (42.59%), Postives = 159/270 (58.89%), Query Frame = 0
Query:   25 CLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGN---------SALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMWVYIFAPILGALVGALFHDLLI 286
            CLAE  GTF+L+F GLG    +VL  A   L+  A +WG A+TL IYV   +S AH+NPA+S ALA +    F  R  V Y+++QT GAF  A L+F LFN +L   E+E  + RG   S    M YGEFFP+P  + ++ G          +A +P  S   AF  E VGT LL  +++A+ D   +      +AP  IGL++ ++VS+  P T+AC NPARD G RL A++ G+G  ALP     + VY+ APILGA++GA  +D L+
Sbjct:  152 CLAEFAGTFILIFLGLGVVHTSVLTGAQSGLWQVAVVWGAAVTLAIYVVGGVSGAHINPAISAALAAW--GRFPWREVVPYVLAQTAGAFAAAALLFVLFNPYLKEREREKGVERGGPGSEITAMCYGEFFPSPGPLSNSEGPYSLDEHQRINAFVPESS---AFLGEVVGTMLLAMVVVAVTDPRNSERPAAGMAPAFIGLTVAALVSIFGPLTQACFNPARDVGPRLFAMLAGWGTAALPRGTGVVTVYVLAPILGAIIGAGLYDRLL 416          
BLAST of NO11G01600 vs. NCBI_GenBank
Match: PIP68474.1 (aquaporin [Candidatus Omnitrophica bacterium CG22_combo_CG10-13_8_21_14_all_43_16] >PJC48173.1 aquaporin [Candidatus Omnitrophica bacterium CG_4_9_14_0_2_um_filter_42_8])

HSP 1 Score: 195.7 bits (496), Expect = 2.600e-46
Identity = 109/278 (39.21%), Postives = 166/278 (59.71%), Query Frame = 0
Query:   17 RKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVNAPIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPRMCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMIYGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDRNQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMGYGKVALPGPRNEMW-VYIFAPILGALVGALFHDLLIAPGLRRTA 294
            +  + L +   E TGTF+LVFFG G  A +VL +A   LF  A +WG+ +TLGIY +  +S AHLNPAVSI + +  +     R    YI++Q IGAF+ A  ++ LF + + AYE  + I+RG  +SI   M++GE+FPNP         S+ +   S+  A   E +GTF+L+ +I  + ++         LAP+ IG ++  I+ ++AP T+A +NPARDFG RL A + G+G  A+PGP+   + VYI +PILG L+ A+    +I P + R++
Sbjct:    2 KSKEYLENLTGEVTGTFILVFFGCGAVAASVLFSAYTGLFQVAGIWGIGVTLGIYASRHLSCAHLNPAVSIGMVV--AGRMHARKLPVYIIAQLIGAFLAAAAIYLLFANSICAYEAAHGILRGDPSSISSAMMFGEYFPNP--------GSSGINAVSLATAMFAEGIGTFMLVLMIFLLTEKCNLGRPENSLAPVFIGATVTVIICLIAPLTQAGLNPARDFGPRLFAFLSGWGNAAIPGPKGGFFTVYILSPILGGLLAAICFTKVIEPMMNRSS 269          
The following BLAST results are available for this feature:
BLAST of NO11G01600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005718227.14.100e-5241.97Histone deacetylases (HDA1 superfamily) [Chondrus ... [more]
PCI20594.12.700e-5143.12aquaporin [SAR202 cluster bacterium][more]
OSX73708.16.600e-5044.53hypothetical protein BU14_0331s0024 [Porphyra umbi... [more]
PHX62812.19.500e-4940.79aquaporin [Planctomycetaceae bacterium][more]
OIO95952.11.800e-4742.75hypothetical protein AUJ96_25675 [Armatimonadetes ... [more]
PIZ43987.11.800e-4742.75hypothetical protein COY42_14910, partial [Armatim... [more]
PKN81192.14.000e-4741.42aquaporin [Chloroflexi bacterium HGW-Chloroflexi-9... [more]
AMV38268.15.200e-4742.59Glycerol uptake facilitator protein [Planctomyces ... [more]
WP_082858566.15.200e-4742.59aquaporin family protein [Planctomyces sp. SH-PL62... [more]
PIP68474.12.600e-4639.21aquaporin [Candidatus Omnitrophica bacterium CG22_... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002104NSK002104Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01600.1NO11G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591214gene_5045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01600.1NO11G01600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01600 ID=NO11G01600|Name=NO11G01600|organism=Nannochloropsis oceanica|type=gene|length=1541bp
ATGGCTTTCCATCTCGAGGACATCCTCACTGCGTTTACGGAGAAGTACAG
GAAGAACAAGGTGTTGACGAGTTGCCTTGCGGAAGCCACAGGCACCTTCC
TGCTCGTATTTTTCGGCTTAGGCTTCACGGCAAACGCTGTTCTCGTTAAC
GCGCCCATAGACCTCTTTGGTGGAGCTTTCCTATGGGGCTTGGCCTTGAC
TCTGGGCATCTACGTGACCGCCTCCATCTCTACTGgtacgtgcccggaca
gggaatgggaaaaagaatagttggccaagtgggccacttgtgttcttgcc
cgaaggcctggcaggactccttcatattgcgccttgatttgacggcatac
aagaagcatatgagcaagcttacttcctgtgtatctgccttatgtgtgat
gtagagagagcgggcattggtcgctatgcttctacacgccgccacacaat
atgcgttcatgaacattatccttaccgcccacatccctcaaacctctccc
tttcccttcacccatcctacacacatagCGCATCTGAACCCGGCTGTTTC
AATTGCTCTGGCAATTTTTCGCTCCAAGGAGTTCACACCTCGGATGTGCG
TGTGTTACATCGTCAGTCAAACCATCGGGGCCTTCATAGGCGCCCTCCTT
GTCTTTGGGCTCTTCAACGACTTTCTCGTCGCATATGAGCAAGAGAACAA
TATCGTGCGGGGATCTGTGGCTAGCATTGGGCAAGAGATGATTTATGGGG
AGTTCTTTCCCAATCCCGCAATCATTCCCCACACTGTTGGGAACAGCGCT
CTTCTCCCGGGAGGCTCGATCGAGCACGCATTTGCCATGGAATTTGTTGG
TACGTTTTTGTTGATGTTTTTGATCCTGGCAATCGTGGATCGTAACCAGA
ACACTTTGAAGCATAAGGAATTGGCGCCACTCATTATTGGCTTATCCTTG
GTGAGCATCGTTTCTGTTGTGGCCCCGTCGACGGAGGCATGCATCAACCC
CGCAAGGGACTTCGGTGCGAGGCTCGTGGCGGTGATGATGGGATATGGAA
AAGTAGCGCTTCCGGGGCCGAGGAACGAAATGTGGGTCTATATCTTTGCG
CCGATATTGGGGGCGTTGGTGGGAGCGTTGTTCCATGATCTTTTGATTGC
TCCGGGCCTGCGAAGGACTGCGAAACCGTATGTGACGTATCAGTCGAAGG
TCCATGATTTGCAATTGCAGAGGTCGCTGCGgtgagtgtgtatttgtctt
ccccccgacgggtggaggggaaaagacgaaggaggttgaagggggggggg
gtcatacgtattcgcttacatttccaccccctatttctcacaatcatctc
ctgcccccttgattcactcaaatagCGACATCTTCAGCAACCAGGGGTCC
AAAGACGAAATCAGCAGCCCCTCTTCTGGTGGTGGTCTCACCCTCGAGCA
ACAGACGAAGCTGCTTGCCATTCTGGCTGGTGCTGCCTTTCAAGGCGGCA
AGCAGGAGGAAGCGGCGGAGGCAGAGGCACGCCCTGCCTAA
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protein sequence of NO11G01600.1

>NO11G01600.1-protein ID=NO11G01600.1-protein|Name=NO11G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MAFHLEDILTAFTEKYRKNKVLTSCLAEATGTFLLVFFGLGFTANAVLVN
APIDLFGGAFLWGLALTLGIYVTASISTAHLNPAVSIALAIFRSKEFTPR
MCVCYIVSQTIGAFIGALLVFGLFNDFLVAYEQENNIVRGSVASIGQEMI
YGEFFPNPAIIPHTVGNSALLPGGSIEHAFAMEFVGTFLLMFLILAIVDR
NQNTLKHKELAPLIIGLSLVSIVSVVAPSTEACINPARDFGARLVAVMMG
YGKVALPGPRNEMWVYIFAPILGALVGALFHDLLIAPGLRRTAKPYVTYQ
SKVHDLQLQRSLRDIFSNQGSKDEISSPSSGGGLTLEQQTKLLAILAGAA
FQGGKQEEAAEAEARPA*
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