NO11G01460, NO11G01460 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO11G01460 vs. NCBI_GenBank
Match: EWM25074.1 (extrinsic protein in photosystem ii [Nannochloropsis gaditana]) HSP 1 Score: 254.6 bits (649), Expect = 3.000e-64 Identity = 124/181 (68.51%), Postives = 151/181 (83.43%), Query Frame = 0 Query: 41 MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFRKGSPLFD 222 MRV+S A +A+ GSA+AF+PQ P+ ++K+++GKA+QKL + PA+VLG+Y GPMIQPVHADGSVS+TTV RA G+YGPRV+ALKDAVAKGDF A+ K DGA L+NSGAFALN+ Q+ V Y+DVRAAV KKDA LK+AWA+YF EAGLDK NPF L + GQSYSGDFDFR+GSPLFD Sbjct: 1 MRVISTAAFLALLGSAIAFIPQAPQSTQKMDLGKAVQKLLVGPALVLGVYGGPMIQPVHADGSVSSTTVQRASGLYGPRVIALKDAVAKGDFAALDKADGAIRLFNSGAFALNKPQKLKVQALYNDVRAAVVKKDASRLKTAWAMYFKEAGLDKTNPFSLKDAGQSYSGDFDFRRGSPLFD 181
BLAST of NO11G01460 vs. NCBI_GenBank
Match: BAG85209.1 (extrinsic protein in photosystem II [Chaetoceros gracilis]) HSP 1 Score: 97.1 bits (240), Expect = 7.900e-17 Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 0 Query: 44 LSMTALVAIAGSAVAFVPQG-PKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 LS+ AL + S AF P + S +N+ + A ++A AV+ GI P I ADG+VS+ T++RA+G+YG R+ ALKDAVA GDF A+ +E A L+NSGA+ N+ ++ +++ A+ D A+KSA+ Y A +P P GQ YS +FDFR Sbjct: 3 LSIAAL--LVTSVAAFAPSSVERTSTALNMDRRSAFAQIATTGAVLAGI---PSI--ASADGAVSSATINRARGLYGDRIAALKDAVAAGDFKAIAEEKNAFILFNSGAYPTNKAKKNAAIAQTNEIFKAIRSGDKAAVKSAYDAYM-AANEIRPLPEINSNVGQGYSSEFDFR 168
BLAST of NO11G01460 vs. NCBI_GenBank
Match: EJK47635.1 (hypothetical protein THAOC_33632 [Thalassiosira oceanica]) HSP 1 Score: 94.0 bits (232), Expect = 6.700e-16 Identity = 68/174 (39.08%), Postives = 98/174 (56.32%), Query Frame = 0 Query: 44 LSMTALVAIAGSAVAF-VPQGPKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 + + L +A SA AF +P+ +N+ + A ++A AV+ G+ P + ADG+ SA TV RA+GIYG R+ AL+DAV+KGDF A+ E A LYNSGA ++ +Q K + + AA+ KDAGALK A+ Y ++ D E GQ YS D+DF+ Sbjct: 1 MKLITLACVAASAAAFSTGSVERPATALNMDRRAAAGQIAAGAAVIAGL---PNL--ALADGAKSAATVSRARGIYGQRIAALEDAVSKGDFGAVAAEKNAFILYNSGAIT-SKDKQAAAVKQTNAIFAAIRGKDAGALKKAYGDY--KSAQDIAVIVVDKEKGQGYSNDYDFK 166
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_009037051.1 (hypothetical protein AURANDRAFT_71657 [Aureococcus anophagefferens] >EGB08328.1 hypothetical protein AURANDRAFT_71657 [Aureococcus anophagefferens]) HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15 Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 0 Query: 54 GSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQP--VHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF----ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLD-KPNPFRLDEPGQSYSGDFDFRKGSP 219 G A A PQ K + A V G +A + P ADG+VSA TV R++GIYG R+ LKDAV KGDF A+ E A L+NSGA+ A+ + Q+ + ++ A+A K+A LK+++A Y A +D KP GQ YS D+D+++ P Sbjct: 9 GGAAALAPQPVKLDRR-----------QAMKTVAGTFAAAVAAPQIASADGAVSAATVARSRGIYGGRIADLKDAVEKGDFAAVLAEKNAFDLFNSGAYAQKSAITKAQKAIAVTETKNIMEAIASKNANQLKTSYAAYMKNAAIDTKPVDV---STGQGYSNDYDWKRAFP 166
BLAST of NO11G01460 vs. NCBI_GenBank
Match: 4K7B_A (Chain A, Crystal Structure Of Extrinsic Protein In Photosystem Ii) HSP 1 Score: 90.9 bits (224), Expect = 5.700e-15 Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 0 Query: 101 DGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 DG+VS+ T++RA+G+YG R+ ALKDAVA GDF A+ +E A L+NSGA+ N+ ++ +++ A+ D A+KSA+ Y A +P P GQ YS +FDFR Sbjct: 1 DGAVSSATINRARGLYGDRIAALKDAVAAGDFKAIAEEKNAFILFNSGAYPTNKAKKNAAIAQTNEIFKAIRSGDKAAVKSAYDAYM-AANEIRPLPEINSNVGQGYSSEFDFR 113
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_002180868.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47520.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.7 bits (221), Expect = 1.300e-14 Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = 0 Query: 44 LSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLG-IYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFRKGSP 219 LS+ A +A SA AF P S++ + + + A A+V G ADG+VS TV +A+ +YG R+ LK+AV KGDF A+ E A L+NSGA+ + ++ ++K + + + AAV D ALKSA+ Y + KP P + GQ YS D+D+R +P Sbjct: 3 LSVVACALLASSAAAFAPAA---SQRSSTSLNMDRRAAFGAIVAGAAVVATAPNAAFADGAVSGATVQKARTVYGGRIAELKEAVNKGDFGAVANEKSAFVLFNSGAYPTSKSKEEKKAAISSTNKIFAAVKAGDKAALKSAYDEYVKTNDI-KPFPKVDPKNGQGYSSDYDYRVRTP 176
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_002293679.1 (hypothetical protein THAPSDRAFT_24769 [Thalassiosira pseudonana CCMP1335] >EED88688.1 hypothetical protein THAPSDRAFT_24769 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.4 bits (220), Expect = 1.700e-14 Identity = 66/174 (37.93%), Postives = 97/174 (55.75%), Query Frame = 0 Query: 50 VAIAGSAVAFVPQG-PKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLD-EPGQSYSGDFDFRKGSPL 220 + + SA AF P + S +N+ + A ++A + AV+ G+ + + ADG+ SA T RA+GIYG R+ AL+ AV GDF A+ E A L+NSGA A ++ ++ K + + AA+ KDAGALKSA+A Y G + D E GQ YS D+DF+ + L Sbjct: 6 LCLVASAAAFAPAPVERASTSLNMDRRMATAQIATSAAVLAGLPSLAL-----ADGAKSAATQSRARGIYGQRIAALESAVNAGDFGAVAAEKNAFILFNSGAIA-DKSKKSEAVKQTNAIFAAIRAKDAGALKSAYATY---KGANDIKVIVADKESGQGYSNDYDFKARTTL 170
BLAST of NO11G01460 vs. NCBI_GenBank
Match: GAX16622.1 (hypothetical protein FisN_23Lh249 [Fistulifera solaris]) HSP 1 Score: 86.3 bits (212), Expect = 1.400e-13 Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 0 Query: 102 GSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 G+VSA TV+RA+GIYG R+ ALK AV KGD DA+ E A L+NSGA+ A ++ Q+K + + + A+ D A+KSA+ Y A P P GQ YSGDFDFR Sbjct: 60 GAVSAATVNRARGIYGDRIAALKSAVEKGDLDAIVAEKNAFVLFNSGAYPTAKSKQQKKAAIEGTNAIFKAIKAGDKAAVKSAYNSYV-AANDISPLPAVDANKGQGYSGDFDFR 173
BLAST of NO11G01460 vs. NCBI_GenBank
Match: OEU14823.1 (extrinsic protein in photosystem II [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 85.5 bits (210), Expect = 2.400e-13 Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 0 Query: 41 MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 M+ +++ + + IA SA AF P ++ A+ G+ A M ADG++S T+ R++ +G R+ ALK AVAKGDF A+ E A LYNSGA+ A N+ +K A + + A+ KDA AL++A+A Y + +E GQ YS D+D+R Sbjct: 1 MKFVAVVSTLLIA-SASAFAPASTSERATTTSLNMDRRSAMGAIAAAGVVATTMPGAAVADGAISKATIQRSKFKFGSRIAALKGAVAKGDFAAVAAEKNAFVLYNSGAYPGAKNKEAKKQAIIATNAIFGAIRAKDAKALQTAYAGYIKATNMSDYEAISAEE-GQGYSSDWDYR 174
BLAST of NO11G01460 vs. NCBI_GenBank
Match: GAX18355.1 (hypothetical protein FisN_23Hh249 [Fistulifera solaris]) HSP 1 Score: 83.6 bits (205), Expect = 9.100e-13 Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0 Query: 104 VSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215 VSA TV+RA+GIYG R+ ALK AV KGD DA+ E A L+NSGA+ A ++ Q+K + + + A+ D A+KSA+ Y A P P GQ YSGDFDFR Sbjct: 62 VSAATVNRARGIYGDRIAALKSAVEKGDLDAIVAEKNAFVLFNSGAYPTAKSKQQKKAAIEGTNAIFKAIKAGDKAAVKSAYNSYV-AANDISPLPAVDANKGQGYSGDFDFR 173 The following BLAST results are available for this feature:
BLAST of NO11G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 12
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G01460 ID=NO11G01460|Name=NO11G01460|organism=Nannochloropsis oceanica|type=gene|length=1997bpback to top protein sequence of NO11G01460.1 >NO11G01460.1-protein ID=NO11G01460.1-protein|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bpback to top Synonyms
Publications
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