NO11G01460, NO11G01460 (gene) Nannochloropsis oceanica

Overview
NameNO11G01460
Unique NameNO11G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1997
Alignment locationchr11:490976..492972 +

Link to JBrowse

Properties
Property NameValue
DescriptionExtrinsic protein in photosystem ii
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:490976..492972 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO11G01460 vs. NCBI_GenBank
Match: EWM25074.1 (extrinsic protein in photosystem ii [Nannochloropsis gaditana])

HSP 1 Score: 254.6 bits (649), Expect = 3.000e-64
Identity = 124/181 (68.51%), Postives = 151/181 (83.43%), Query Frame = 0
Query:   41 MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFRKGSPLFD 222
            MRV+S  A +A+ GSA+AF+PQ P+ ++K+++GKA+QKL + PA+VLG+Y GPMIQPVHADGSVS+TTV RA G+YGPRV+ALKDAVAKGDF A+ K DGA  L+NSGAFALN+ Q+  V   Y+DVRAAV KKDA  LK+AWA+YF EAGLDK NPF L + GQSYSGDFDFR+GSPLFD
Sbjct:    1 MRVISTAAFLALLGSAIAFIPQAPQSTQKMDLGKAVQKLLVGPALVLGVYGGPMIQPVHADGSVSSTTVQRASGLYGPRVIALKDAVAKGDFAALDKADGAIRLFNSGAFALNKPQKLKVQALYNDVRAAVVKKDASRLKTAWAMYFKEAGLDKTNPFSLKDAGQSYSGDFDFRRGSPLFD 181          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: BAG85209.1 (extrinsic protein in photosystem II [Chaetoceros gracilis])

HSP 1 Score: 97.1 bits (240), Expect = 7.900e-17
Identity = 67/174 (38.51%), Postives = 98/174 (56.32%), Query Frame = 0
Query:   44 LSMTALVAIAGSAVAFVPQG-PKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            LS+ AL  +  S  AF P    + S  +N+ +  A  ++A   AV+ GI   P I    ADG+VS+ T++RA+G+YG R+ ALKDAVA GDF A+ +E  A  L+NSGA+  N+ ++       +++  A+   D  A+KSA+  Y   A   +P P      GQ YS +FDFR
Sbjct:    3 LSIAAL--LVTSVAAFAPSSVERTSTALNMDRRSAFAQIATTGAVLAGI---PSI--ASADGAVSSATINRARGLYGDRIAALKDAVAAGDFKAIAEEKNAFILFNSGAYPTNKAKKNAAIAQTNEIFKAIRSGDKAAVKSAYDAYM-AANEIRPLPEINSNVGQGYSSEFDFR 168          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: EJK47635.1 (hypothetical protein THAOC_33632 [Thalassiosira oceanica])

HSP 1 Score: 94.0 bits (232), Expect = 6.700e-16
Identity = 68/174 (39.08%), Postives = 98/174 (56.32%), Query Frame = 0
Query:   44 LSMTALVAIAGSAVAF-VPQGPKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            + +  L  +A SA AF      +P+  +N+ +  A  ++A   AV+ G+   P +    ADG+ SA TV RA+GIYG R+ AL+DAV+KGDF A+  E  A  LYNSGA   ++ +Q    K  + + AA+  KDAGALK A+  Y  ++  D        E GQ YS D+DF+
Sbjct:    1 MKLITLACVAASAAAFSTGSVERPATALNMDRRAAAGQIAAGAAVIAGL---PNL--ALADGAKSAATVSRARGIYGQRIAALEDAVSKGDFGAVAAEKNAFILYNSGAIT-SKDKQAAAVKQTNAIFAAIRGKDAGALKKAYGDY--KSAQDIAVIVVDKEKGQGYSNDYDFK 166          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_009037051.1 (hypothetical protein AURANDRAFT_71657 [Aureococcus anophagefferens] >EGB08328.1 hypothetical protein AURANDRAFT_71657 [Aureococcus anophagefferens])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 0
Query:   54 GSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQP--VHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF----ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLD-KPNPFRLDEPGQSYSGDFDFRKGSP 219
            G A A  PQ  K   +            A   V G +A  +  P    ADG+VSA TV R++GIYG R+  LKDAV KGDF A+  E  A  L+NSGA+    A+ + Q+ +      ++  A+A K+A  LK+++A Y   A +D KP        GQ YS D+D+++  P
Sbjct:    9 GGAAALAPQPVKLDRR-----------QAMKTVAGTFAAAVAAPQIASADGAVSAATVARSRGIYGGRIADLKDAVEKGDFAAVLAEKNAFDLFNSGAYAQKSAITKAQKAIAVTETKNIMEAIASKNANQLKTSYAAYMKNAAIDTKPVDV---STGQGYSNDYDWKRAFP 166          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: 4K7B_A (Chain A, Crystal Structure Of Extrinsic Protein In Photosystem Ii)

HSP 1 Score: 90.9 bits (224), Expect = 5.700e-15
Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = 0
Query:  101 DGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            DG+VS+ T++RA+G+YG R+ ALKDAVA GDF A+ +E  A  L+NSGA+  N+ ++       +++  A+   D  A+KSA+  Y   A   +P P      GQ YS +FDFR
Sbjct:    1 DGAVSSATINRARGLYGDRIAALKDAVAAGDFKAIAEEKNAFILFNSGAYPTNKAKKNAAIAQTNEIFKAIRSGDKAAVKSAYDAYM-AANEIRPLPEINSNVGQGYSSEFDFR 113          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_002180868.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47520.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-14
Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = 0
Query:   44 LSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLG-IYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFRKGSP 219
            LS+ A   +A SA AF P     S++ +    + + A   A+V G            ADG+VS  TV +A+ +YG R+  LK+AV KGDF A+  E  A  L+NSGA+  + ++ ++K    + + + AAV   D  ALKSA+  Y     + KP P    + GQ YS D+D+R  +P
Sbjct:    3 LSVVACALLASSAAAFAPAA---SQRSSTSLNMDRRAAFGAIVAGAAVVATAPNAAFADGAVSGATVQKARTVYGGRIAELKEAVNKGDFGAVANEKSAFVLFNSGAYPTSKSKEEKKAAISSTNKIFAAVKAGDKAALKSAYDEYVKTNDI-KPFPKVDPKNGQGYSSDYDYRVRTP 176          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: XP_002293679.1 (hypothetical protein THAPSDRAFT_24769 [Thalassiosira pseudonana CCMP1335] >EED88688.1 hypothetical protein THAPSDRAFT_24769 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.4 bits (220), Expect = 1.700e-14
Identity = 66/174 (37.93%), Postives = 97/174 (55.75%), Query Frame = 0
Query:   50 VAIAGSAVAFVPQG-PKPSEKINIGK--ALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAFALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLD-EPGQSYSGDFDFRKGSPL 220
            + +  SA AF P    + S  +N+ +  A  ++A + AV+ G+ +  +     ADG+ SA T  RA+GIYG R+ AL+ AV  GDF A+  E  A  L+NSGA A ++ ++    K  + + AA+  KDAGALKSA+A Y    G +       D E GQ YS D+DF+  + L
Sbjct:    6 LCLVASAAAFAPAPVERASTSLNMDRRMATAQIATSAAVLAGLPSLAL-----ADGAKSAATQSRARGIYGQRIAALESAVNAGDFGAVAAEKNAFILFNSGAIA-DKSKKSEAVKQTNAIFAAIRAKDAGALKSAYATY---KGANDIKVIVADKESGQGYSNDYDFKARTTL 170          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: GAX16622.1 (hypothetical protein FisN_23Lh249 [Fistulifera solaris])

HSP 1 Score: 86.3 bits (212), Expect = 1.400e-13
Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 0
Query:  102 GSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            G+VSA TV+RA+GIYG R+ ALK AV KGD DA+  E  A  L+NSGA+  A ++ Q+K   +  + +  A+   D  A+KSA+  Y   A    P P      GQ YSGDFDFR
Sbjct:   60 GAVSAATVNRARGIYGDRIAALKSAVEKGDLDAIVAEKNAFVLFNSGAYPTAKSKQQKKAAIEGTNAIFKAIKAGDKAAVKSAYNSYV-AANDISPLPAVDANKGQGYSGDFDFR 173          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: OEU14823.1 (extrinsic protein in photosystem II [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.5 bits (210), Expect = 2.400e-13
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 0
Query:   41 MRVLSMTALVAIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHADGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            M+ +++ + + IA SA AF P               ++ A+      G+ A  M     ADG++S  T+ R++  +G R+ ALK AVAKGDF A+  E  A  LYNSGA+  A N+  +K    A + +  A+  KDA AL++A+A Y     +        +E GQ YS D+D+R
Sbjct:    1 MKFVAVVSTLLIA-SASAFAPASTSERATTTSLNMDRRSAMGAIAAAGVVATTMPGAAVADGAISKATIQRSKFKFGSRIAALKGAVAKGDFAAVAAEKNAFVLYNSGAYPGAKNKEAKKQAIIATNAIFGAIRAKDAKALQTAYAGYIKATNMSDYEAISAEE-GQGYSSDWDYR 174          
BLAST of NO11G01460 vs. NCBI_GenBank
Match: GAX18355.1 (hypothetical protein FisN_23Hh249 [Fistulifera solaris])

HSP 1 Score: 83.6 bits (205), Expect = 9.100e-13
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0
Query:  104 VSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF--ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRLDEPGQSYSGDFDFR 215
            VSA TV+RA+GIYG R+ ALK AV KGD DA+  E  A  L+NSGA+  A ++ Q+K   +  + +  A+   D  A+KSA+  Y   A    P P      GQ YSGDFDFR
Sbjct:   62 VSAATVNRARGIYGDRIAALKSAVEKGDLDAIVAEKNAFVLFNSGAYPTAKSKQQKKAAIEGTNAIFKAIKAGDKAAVKSAYNSYV-AANDISPLPAVDANKGQGYSGDFDFR 173          
The following BLAST results are available for this feature:
BLAST of NO11G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
EWM25074.13.000e-6468.51extrinsic protein in photosystem ii [Nannochlorops... [more]
BAG85209.17.900e-1738.51extrinsic protein in photosystem II [Chaetoceros g... [more]
EJK47635.16.700e-1639.08hypothetical protein THAOC_33632 [Thalassiosira oc... [more]
XP_009037051.11.100e-1536.63hypothetical protein AURANDRAFT_71657 [Aureococcus... [more]
4K7B_A5.700e-1542.11Chain A, Crystal Structure Of Extrinsic Protein In... [more]
XP_002180868.11.300e-1435.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002293679.11.700e-1437.93hypothetical protein THAPSDRAFT_24769 [Thalassiosi... [more]
GAX16622.11.400e-1346.09hypothetical protein FisN_23Lh249 [Fistulifera sol... [more]
OEU14823.12.400e-1334.09extrinsic protein in photosystem II [Fragilariopsi... [more]
GAX18355.19.100e-1346.02hypothetical protein FisN_23Hh249 [Fistulifera sol... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002119NSK002119Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01460.1NO11G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591167gene_5028Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100098g14gene5429Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01460.1NO11G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01460 ID=NO11G01460|Name=NO11G01460|organism=Nannochloropsis oceanica|type=gene|length=1997bp
GCTAGGTGCACATATTTTTTAGCATTAGCAGCAGTGCGGCTTTCGTGACG
TAGCGAAGCTCGAAGGAGGAAAGCTTGGCTTTTGACCAGTTTATACGTTG
AATGGATACGAGCCTGCTCAAATTATCAAGTCAGTCATCTTGTTCAGTGG
TCATGCACAAAAGTTAGTCACGTTTTTGGCACGGTACTTGACTTGTTGCA
CCAAAAAATCGAATAGATCAATCAGGTGGGCATGCCGTACCGTCCATGTC
TGCTGGGTCGTGAGATCAAGTACAAAGTCACATACATAACCCTAACCCAC
AGAACCGTACACGACTTATCAATATCATAATCCATAAAGATTGACAGAAG
AGTATGAACTTACAAGAAAGCATTTTTTTTAACAGGAAGTTTGTCCAATC
TGAGGTTCTCGGAACTGGTTGAAGGGCGAGTCCATCGCACGGCTGTCGCT
TGCCGGCGCCAGAAACTTTAAGCTGATTCAGCGGAGACTTTCCATTGCCT
CTCTAGGGCAAGCTCATGTGATTTGTGGTTAGGATATCATTCAGTCATGA
GTGGGCTCCTAAAACCTCCCGATCAAATCGCGTCATAACCGTGTCTTCAA
TCGGAAGGATTTGTCATTGTGGTGTCGTCAACGTGCATCAATACCCTCAT
AGCGATCTGACACCACATGCACGTGCCGGGACTTGCAGGCTTCTCTAGGC
CTTTAATTCGCATACTTTCAAATATCGCTCACTTCTTTCCTCCTTCCACA
TGCTCCTCGACACCCCGCATACCTCGTCTAGCCATCATGCGTGTCCTCTC
CATGACTGCCCTGGTGGCAATTGCTGGATCTGCCGTGGCCTTCGTGCCCC
AGGGCCCCAAACCCAGgtaagtacttggcaacgcgagagatttgtagatg
agtgtcggtgcgtgggcttgtgtcacgcgaagtggcgagagtcacagtga
tgtttcctccggtccgagcagaggatcttttcagttggcggtgttagtac
gagccttaatttgcgtgtatgcatgtgtacactcacatatgtacatactc
aaacgtcaaagttgggacacattcattttataatgcagcattcttcctct
tcgttcctctgcacttactgatcatttcctcttccctaccttccttccgc
agCGAGAAAATTAACATTGGCAAAGCGCTCCAAAAATTGGCCTTGGCTCC
GGCGGTGGTCCTCGGCATCTATGCCGGCCCCATGATCCAACCCGTACACG
CTGACGGCAGTGTCTCCGCCACTACCGTCCACCGTGCACAAGGGATATAC
GGGCCTCGCGTGATGGCGCTCAAGGACGCGGTCGCCAAGGGAGACTTCGA
CGCGATGAAGAAGGAGGATGGTGCGGCCACCCTTTACAATTCTGGCGCGT
TTGCCCTGAACCGCGTGCAGCAGAAGGTGGTGGCGAAGGCTTACGACGAT
GTCCGCGCTGCTGTTGCCAAGAAGGATGCGGGGGCGCTTAAGTCGGCATG
GGCTGTGTATTTCCACGAGGCGGGTTTGGACAAGCCTAACCCTTTTAGGT
TGGACGAGCCCGGGCAGAGTTACTCGGGTGACTTTGATTTCAGGAAAGGC
TCGCCCTTGTTTGATAGGTATGCCGCGGAGTTGGCGGGTGAAAGTGGGAA
ATAATAGGACAGGAAATGGAGAAGACGGAAAGGGGAAGCGAGGGAGGGAG
CAAGCATGGGTGGAGAGGCAACAATGGGATGGTCATGATATGGTGCGACC
TAGAATGTCTTTGAAGTGGAGGAAAGAGATAAATGGAAGGGTGATTTAAG
GGATGGAGATATCTCGGTCGTGAACGCTTGGTGAAAGGAAAGAGACGCAT
TACATACCATTCGAGTGTTTATATTGGGAGTGAGGTCGAACGCGCACCGT
TTCTTGTCTGCTGCAAGTGCGGTCGATCGGTTCACTACTCTCATGTGCGC
TTCAGCAACTATGCAGATGCATTTGATTTATGTATGAACTAGCCTGG
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protein sequence of NO11G01460.1

>NO11G01460.1-protein ID=NO11G01460.1-protein|Name=NO11G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHVPGLAGFSRPLIRILSNIAHFFPPSTCSSTPRIPRLAIMRVLSMTALV
AIAGSAVAFVPQGPKPSEKINIGKALQKLALAPAVVLGIYAGPMIQPVHA
DGSVSATTVHRAQGIYGPRVMALKDAVAKGDFDAMKKEDGAATLYNSGAF
ALNRVQQKVVAKAYDDVRAAVAKKDAGALKSAWAVYFHEAGLDKPNPFRL
DEPGQSYSGDFDFRKGSPLFDRYAAELAGESGK*
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Synonyms
Publications