NO11G01370, NO11G01370 (gene) Nannochloropsis oceanica

Overview
NameNO11G01370
Unique NameNO11G01370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length444
Alignment locationchr11:474738..475181 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription elongation factor spt5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:474738..475181 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
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BLAST of NO11G01370 vs. NCBI_GenBank
Match: EWM25066.1 (transcription elongation factor spt5 [Nannochloropsis gaditana])

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-13
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 0 
Query:    1 MVRIKGKSEFKGQTGKVRSVKENVVLVDIESGTKPKTIRVGRESVAEDVP 51
            +VRIKGKSEFKGQTGKVRSVK+NVV VDIESGT+PKT+RV RE+VAED P
Sbjct:  791 VVRIKGKSEFKGQTGKVRSVKDNVVFVDIESGTRPKTVRVPREAVAEDAP 840
The following BLAST results are available for this feature:
BLAST of NO11G01370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25066.11.200e-1384.00transcription elongation factor spt5 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01370.1NO11G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01370.1NO11G01370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01370 ID=NO11G01370|Name=NO11G01370|organism=Nannochloropsis oceanica|type=gene|length=444bp
ATGGTGAGAATTAAAGGGAAGAGTGAGTTCAAAGGGCAGACAGGCAAGGT
GAGGAGTGTAAAGGAGAACGTGGTGTTGGTCGACATCGAGAGCGGGACCA
AGCCGAAGACCATTCGAGTGGGTCGAGAATCCGTAGCGGAGGACGTGCCA
ACTAAGGGGACGGGAGGTGCCGGGGCAGGAAGGGCTGGATCGGATGCCTA
TTCCATGGGCACCGGGATGACTCCTGCCTGGACGTATGGGAGGACGCCGA
TGCACGGGGGAATGACCCCCATGTACGGAGCGGCTACTCCCATGCATGGG
CCCAACACTCCGGCTCTACACTCGGGGGGAGGCCAGACGCCTGCCTATGC
GGGGGCGGCGACTCCGGCGTTGTACGGTGGGGGGGGGCAGACCCCTCGAC
ATGAGGGGGCCTACACTCCCAGGCATCAGTATCATGATGGATAG
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protein sequence of NO11G01370.1

>NO11G01370.1-protein ID=NO11G01370.1-protein|Name=NO11G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MVRIKGKSEFKGQTGKVRSVKENVVLVDIESGTKPKTIRVGRESVAEDVP
TKGTGGAGAGRAGSDAYSMGTGMTPAWTYGRTPMHGGMTPMYGAATPMHG
PNTPALHSGGGQTPAYAGAATPALYGGGGQTPRHEGAYTPRHQYHDG*
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Synonyms
Publications