NO11G01260, NO11G01260 (gene) Nannochloropsis oceanica

Overview
NameNO11G01260
Unique NameNO11G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr11:439579..441175 +

Link to JBrowse

Properties
Property NameValue
DescriptionU5 small nuclear ribonucleoprotein 40 kDa protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:439579..441175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_005856286.1 (Prp8 binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU20066.1 Prp8 binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 394.0 bits (1011), Expect = 4.800e-106
Identity = 293/356 (82.30%), Postives = 315/356 (88.48%), Query Frame = 0
Query:    1 MEEGSETK-RVGGADEGALVSVPQSSEALALTCA-PAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGELAG 355
            M+EG E + R  GAD+ AL +VP+SS  LA++ A PAPGRTSHLAASTMLLTGHAAAVYCLQFNP GDALA+GSFDK+ILLWD+Y E+CKNY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGTR+RKC EHT CVNSVA AG K     V   XXXXXXXXXXXXXXXXX R+V+T+EHRFQLLAVALSADGKKV+AGG+DN+I +WD++K G  P DV EGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTG R VQVFQG  HGSDRNLLRCAWS DGEMVSAGS DRAVHVWDVPSGQELYYLPGHKGTVNEVVFHP EPVIASASSDKTC+LGELAG
Sbjct:    8 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVY-EDCKNYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTRIRKCKEHTGCVNSVAVAGDK-----VAALXXXXXXXXXXXXXXXXXRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAK-GPAPLDVLEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 356          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: EWM25120.1 (u5 small nuclear ribonucleoprotein 40 kda protein [Nannochloropsis gaditana])

HSP 1 Score: 394.0 bits (1011), Expect = 4.800e-106
Identity = 294/356 (82.58%), Postives = 316/356 (88.76%), Query Frame = 0
Query:    1 MEEGSETK-RVGGADEGALVSVPQSSEALALTCA-PAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGELAG 355
            M+EG E + R  GAD+ AL +VP+SS  LA++ A PAPGRTSHLAASTMLLTGHAAAVYCLQFNP GDALA+GSFDK+ILLWD+Y E+CKNY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGTR+RKC EHT CVNSVA AG K     V  XXXXXXXXXXXXXXXXXX R+V+T+EHRFQLLAVALSADGKKV+AGG+DN+I +WD++K G  P DV EGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTG R VQVFQG  HGSDRNLLRCAWS DGEMVSAGS DRAVHVWDVPSGQELYYLPGHKGTVNEVVFHP EPVIASASSDKTC+LGELAG
Sbjct:    1 MDEGPEDEARRTGADDSALATVPESSGTLAISSAPPAPGRTSHLAASTMLLTGHAAAVYCLQFNPMGDALATGSFDKTILLWDVY-EDCKNYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTRIRKCKEHTGCVNSVAVAGDK-----VAAXXXXXXXXXXXXXXXXXXRRSVQTIEHRFQLLAVALSADGKKVFAGGIDNSIQVWDMAK-GPAPLDVLEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGGRLVQVFQGGTHGSDRNLLRCAWSQDGEMVSAGSADRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPREPVIASASSDKTCYLGELAG 349          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_011401437.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Auxenochlorella protothecoides] >KFM28422.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Auxenochlorella protothecoides])

HSP 1 Score: 211.1 bits (536), Expect = 5.700e-51
Identity = 158/349 (45.27%), Postives = 197/349 (56.45%), Query Frame = 0
Query:   14 DEGALVSVPQSSEALALTCAPAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNS---------VAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGELA 354
            DEGA+  VP    +   T    P RTS L A TMLLTGHA  V+ L+FNP GD LA+GS+DK+ILL+  YG EC+N+   XXXXXXXXXXXXXXXXXXXXXXXXXXX      + G +++K +EH   VNS         +  +G    T  V                     R+V T   ++Q+LAVA S  G  VY GG++N +  WDL +G   P+    GH++T                           RP+    R  +V  G +H  +RNLLRCAWS DGE V+AGS DR V+VW    G   Y LPGH G+VNEVVFHP EP++ASASSDKT ++GELA
Sbjct:   30 DEGAV--VPAGPASSLATKPQGPSRTSALLAPTMLLTGHADQVFTLKFNPDGDVLATGSYDKTILLYRTYG-ECENFLQIXXXXXXXXXXXXXXXXXXXXXXXXXXXVRAWDASTGQQVKKMSEHGDIVNSCCPLKRGSPLLVSGSDDGTAKV---------------WDLRSKRSVATFTEKYQVLAVAWSEAGDAVYTGGIENVVRAWDLRRGA--PSLTLAGHADTVTGLAPSPDGAHLLSNSMDGTLRVWDVRPYAAQDRCQRVLTGHVHNFERNLLRCAWSPDGERVTAGSADRMVYVWRSADGAVQYALPGHGGSVNEVVFHPTEPIVASASSDKTVYMGELA 358          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: GAX86509.1 (hypothetical protein CEUSTIGMA_g13916.t1 [Chlamydomonas eustigma])

HSP 1 Score: 208.0 bits (528), Expect = 4.800e-50
Identity = 191/355 (53.80%), Postives = 231/355 (65.07%), Query Frame = 0
Query:   10 VGGADEGALVSVPQ--SSEALALTCA-PAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVA---------AAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            VG  D+GA+V   Q   +E +  T       RTS+L A  M LTGH A +Y L+F+P G  +ASGSFD+ I LW  YG +C NYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G +++K TEH S VNSV           +G   +T  V                     R+V T   +FQ+ AVA +  G +VY+GGLDN+I +WDL K  +EPA V +GH +T   XXXXXXXXXXXXXXXXXXXXXXXX P+    R V+ F G  H  +R  LRC WS DG+ V+AGS DR+V++WDV + + LY LPGH G+VNE VFHP EP+I S SSDKT FLGEL
Sbjct:   16 VGNVDDGAIVLKKQKLGTEIIVGTVTKEGIKRTSNLQAPIMQLTGHGAEIYSLKFSPDGHTIASGSFDRHIFLWKTYG-DCPNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHTGDQVKKSTEHDSFVNSVCPIRRGPPLFVSGSDDATIKV---------------WDHRSRRSVVTFREKFQVTAVAFADAGDQVYSGGLDNSIKVWDLRK-DDEPAMVLKGHGDTLTGXXXXXXXXXXXXXXXXXXXXXXXXXPYAPQNRCVKTFMGHQHTFERLQLRCDWSPDGQQVTAGSSDRSVYIWDVSTRKLLYKLPGHNGSVNEAVFHPKEPIIGSCSSDKTIFLGEL 353          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: GAX83151.1 (hypothetical protein CEUSTIGMA_g10577.t1 [Chlamydomonas eustigma])

HSP 1 Score: 206.8 bits (525), Expect = 1.100e-49
Identity = 190/355 (53.52%), Postives = 231/355 (65.07%), Query Frame = 0
Query:   10 VGGADEGALVSVPQ--SSEALALTCA-PAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVA---------AAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            VG  D+GA+V   Q   +E +  T       RTS+L A  M LTGH A +Y L+F+P G  +ASGSFD+ I LW  YG +C NYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + G +++K TEH S VNSV           +G   +T  V                     R+V T   +FQ+ AVA +  G +VY+GGLDN+I +WDL K  +EPA V +GH +T   XXXXXXXXXXXXXXXXXXXXXXXX P+    R ++ F G  H  +R  LRC WS DG+ V+AGS DR+V++WDV + + LY LPGH G+VNE VFHP EP+I S SSDKT FLGEL
Sbjct:   16 VGNVDDGAIVLKKQKLGTEIIVGTVTKEGIKRTSNLQAPIMQLTGHGAEIYSLKFSPDGHTIASGSFDRHIFLWKTYG-DCPNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHTGDQVKKSTEHDSFVNSVCPIRRGPPLFVSGSDDATIKV---------------WDHRSRRSVVTFREKFQVTAVAFADAGDQVYSGGLDNSIKVWDLRK-DDEPAMVLKGHGDTLTGXXXXXXXXXXXXXXXXXXXXXXXXXPYAPQNRCMKTFMGHQHTFERLQLRCDWSPDGQQVTAGSSDRSVYIWDVSTRKLLYKLPGHNGSVNEAVFHPKEPIIGSCSSDKTIFLGEL 353          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_005709040.1 (transducin family protein / WD-40 repeat family protein [Galdieria sulphuraria] >EME32520.1 transducin family protein / WD-40 repeat family protein [Galdieria sulphuraria])

HSP 1 Score: 200.7 bits (509), Expect = 7.700e-48
Identity = 119/316 (37.66%), Postives = 158/316 (50.00%), Query Frame = 0
Query:   40 SHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGA---RQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            S LA+S + L GH  A+Y L FNP GD LAS SFD+SI LW++YG EC ++                                    ++ +R+R+   HTS VN VA +  + S                              + HR+ LLAV+LSAD   VY GG+DN I +WDL KG + P     GH +T                           RPF  G+   R + V QGA H  +RNLLRC +S DG +V AGS D+ V++WDV SG+  Y LPGH G+VN++VFHP++ VIASASSDKT ++GE+
Sbjct:   30 SSLASSILRLCGHEDAIYGLDFNPRGDCLASCSFDRSIFLWNVYG-ECNSFGVLRGHKNSIGSICWVDNEKLVSCSADKNAAVWDAQSQ-SRIRQLKGHTSFVNDVAVSKNQFS-----FMAATVSDDRQLILWDIRTRHPQHFIMHRYPLLAVSLSADPDVVYCGGIDNRIYVWDLRKGNDSPLLELMGHHDTLTGMDITHDACFLCSNSMDNTIRIWDVRPFFEGSDEERCLTVLQGASHSFERNLLRCRFSTDGTLVGAGSADKFVYIWDVDSGELRYALPGHDGSVNDIVFHPDQSVIASASSDKTIYIGEI 338          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_009836350.1 (hypothetical protein H257_11182 [Aphanomyces astaci] >ETV74244.1 hypothetical protein H257_11182 [Aphanomyces astaci])

HSP 1 Score: 197.2 bits (500), Expect = 8.500e-47
Identity = 174/345 (50.43%), Postives = 208/345 (60.29%), Query Frame = 0
Query:   17 ALVSVPQSSEALALTCAPAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSK-------GGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPN--EPVIASASSDKTCFLGEL 353
            +L  VP  ++ + LT      RTS L A TMLL+GH AAVY L F+P G   AS SFD+SI LW +YG ECKNY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GTRL+    H++ VNSV       S G    XXXXXXXXXXXXXXXXX  R V+T+E RFQ+ AV        V++GG+D  +  WDL K       G   P ++  GHSE                            RPF  G R   V+ GA H +DRNL+R  WS D + + +GS DR V++WD  +G   Y+LPGH G+VNEV FHPN  EP++ S  SDK  + GEL
Sbjct:   50 SLEIVPVDAKVVTLTSRSDAARTSDLLAPTMLLSGHGAAVYSLAFSPLGKTAASASFDRSIFLWTVYG-ECKNYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRLKNYRGHSAIVNSVC----PVSKG--PQXXXXXXXXXXXXXXXXXMKREVQTIEERFQVTAVCFGETASTVFSGGVDGLVKQWDLRKPSDTNNHGVPTPVEILAGHSEIITSLQLSPDGNFVLSNAMDSTLRKWDVRPFCEGDRCRMVYYGAKHSNDRNLIRANWSPDMKHIGSGSADRYVYIWDAETGALRYHLPGHAGSVNEVSFHPNPSEPIVGSCGSDKNIYFGEL 387          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_010526614.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Tarenaya hassleriana])

HSP 1 Score: 196.8 bits (499), Expect = 1.100e-46
Identity = 180/320 (56.25%), Postives = 220/320 (68.75%), Query Frame = 0
Query:   33 APAPGRTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNSVAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            AP   RTS L A  MLLTGH +AVY ++FNP G  +ASGS D+ I LW ++G +CKN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G +++K  EH+S VNS         +        XXXXXX           A++T   ++Q+ AV+ S    K++ GG+DNN+ +WDL KG  E     +GH +TXXXXXXXXXXXXXXXXXXXXXXXXXXX P+    R V+V +G  H  ++NLL+C WS DG  V+AGS DR VH+WD  S + LY LPGH G+VNE VFHP+EP+I S SSDK  +LGE+
Sbjct:   30 APGKQRTSSLEAPIMLLTGHQSAVYTMKFNPAGTVIASGSHDREIFLWRVHG-DCKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKQIKKMAEHSSFVNSC------CPSRRGPPLIVXXXXXXTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNNVKVWDLRKG--EVYMTLDGHQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSADRMVHIWDTTSRRILYKLPGHTGSVNESVFHPHEPIIGSCSSDKQIYLGEI 340          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_004309638.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Fragaria vesca subsp. vesca] >XP_004309639.1 PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Fragaria vesca subsp. vesca] >XP_011470960.1 PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 196.1 bits (497), Expect = 1.900e-46
Identity = 181/353 (51.27%), Postives = 228/353 (64.59%), Query Frame = 0
Query:   15 EGALVSV-PQSSEALALTCAPAPG-----RTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNS---------VAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            E AL  V P+  +    T  PAPG     RTS L A  MLLTGH +A+Y ++FNP G  +ASGS DK I LW+++G ECKN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G R++K  EH+S VNS         +  +G    T  +                      A++T   ++Q+ AV+ S    K++ GG+DN++ +WDL K   E     +GH + XXXXXXXXXXXXXXXXXXXXXXXXXXX P+    R V++ +G  H  ++NLL+C+WS DG  V+AGS DR V++WD  S + L+ LPGH G+VNE VFHPNEP+I S SSDK  +LGE+
Sbjct:   10 ENALSVVGPRPMDLFTYTARPAPGPNGKQRTSSLEAPIMLLTGHQSAIYTMKFNPAGTVIASGSHDKEIFLWNVHG-ECKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKRIKKMAEHSSFVNSCHPARRGPPLVVSGSDDGTAKLWDMRVRG---------------AIQTYPDKYQITAVSFSDASDKIFTGGIDNDLKVWDLRKA--EVLMTLQGHQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYAPQNRCVKIMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRRILFMLPGHTGSVNESVFHPNEPIIGSCSSDKQMYLGEI 344          
BLAST of NO11G01260 vs. NCBI_GenBank
Match: XP_012075410.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Jatropha curcas] >KDP35149.1 hypothetical protein JCGZ_10683 [Jatropha curcas])

HSP 1 Score: 195.3 bits (495), Expect = 3.200e-46
Identity = 158/345 (45.80%), Postives = 201/345 (58.26%), Query Frame = 0
Query:   22 PQSSEALALTCAPAPG-----RTSHLAASTMLLTGHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGTRLRKCTEHTSCVNS---------VAAAGGKASTGSVXXXXXXXXXXXXXXXXXXXXXRAVETMEHRFQLLAVALSADGKKVYAGGLDNNILMWDLSKGGEEPADVYEGHSETXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGSVDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLGEL 353
            P    A+  T  P PG     RTS L +  MLLTGH +AVY ++FNP G+ +ASGS DK I LW ++G ECKN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G +++K  EH+S VNS         +  +G    T  +                      A++T   ++Q+ AV  S    K++ GG+DNN+ +WDL K   E     EGH +                XXXXXX      RP+    R V+V +G  H  ++NLL+C+WS DG  V+AGS DR V++WD  S + LY LPGH G+VNE VFHP EP++ S SSDK  +LGE+
Sbjct:   19 PMDWSAVPYTGPPGPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPAGNLIASGSHDKEIFLWYVHG-ECKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRG---------------AIQTFPDKYQITAVGFSDASDKIFTGGIDNNVKVWDLRK--NEVTMKLEGHQDMITGMQLSPDGSYLLTXXXXXXLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPTEPIVGSCSSDKQIYLGEI 345          
The following BLAST results are available for this feature:
BLAST of NO11G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856286.14.800e-10682.30Prp8 binding protein, partial [Nannochloropsis gad... [more]
EWM25120.14.800e-10682.58u5 small nuclear ribonucleoprotein 40 kda protein ... [more]
XP_011401437.15.700e-5145.27U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
GAX86509.14.800e-5053.80hypothetical protein CEUSTIGMA_g13916.t1 [Chlamydo... [more]
GAX83151.11.100e-4953.52hypothetical protein CEUSTIGMA_g10577.t1 [Chlamydo... [more]
XP_005709040.17.700e-4837.66transducin family protein / WD-40 repeat family pr... [more]
XP_009836350.18.500e-4750.43hypothetical protein H257_11182 [Aphanomyces astac... [more]
XP_010526614.11.100e-4656.25PREDICTED: U5 small nuclear ribonucleoprotein 40 k... [more]
XP_004309638.11.900e-4651.27PREDICTED: U5 small nuclear ribonucleoprotein 40 k... [more]
XP_012075410.13.200e-4645.80U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002143NSK002143Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01260.1NO11G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591078gene_5007Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g10gene5406Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01260.1NO11G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01260 ID=NO11G01260|Name=NO11G01260|organism=Nannochloropsis oceanica|type=gene|length=1597bp
AAAATCAATTAAAAAAAAAAAAGTGCTTTCTTTTGTGCTTTCAGCTCGCG
GGTCATGGCAAAGGCGGCTGAGGAATAATGTGAGTGAGGGCAACACAATG
CCTAGCGTGCTGCCCCTTGCTTGGTTTTCTCACCCACGCCTAGCGGCCTT
CGTTTACCCACTCTGTATATCAGTGTTACCCTGCCAAAACATTCATCACC
ACTGTAAGCTTTGCCTGAACGCCTATGAGTTGGTCCTGGAAATGTGCCGG
ACGGGGCTGCGCGATTCCCTTCTCCTCCCGCCCTCCTTCCGAATCATCGT
CACGTTGACCTTCATTCTCGACCCACATCACTATCTACGACAGCGCAGGG
CCTTGAGACATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGGCGCCGA
CGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTGCCCTGA
CTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCAACCATG
CTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAATCCAAC
GGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGTTATGGG
ACATCTACGGCGAGgtaaatctatatacgtctgttccttctcacattaat
actcctactacgctcgctatcggctttgcctcattcttcccaaaccaatt
gcatagGAATGCAAGAACTACAATGTATTGACCGGCCATACCAACGCTGT
GTTGGACCTCAAGTGGTCACGCGACAGTACCATGATCGCCTCAGCCTCCG
CGGACAAGACCCTCATGATCTGGGACACCAACAAGGGCACGCGCCTCCGC
AAATGCACCGAACACACGAGCTGCGTCAACAGCGTGGCAGCAGCGGGAGG
CAAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGCAACTGCCAGCGATG
ACAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGCGGGCGGTCGAGACG
ATGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTATCGGCAGATGGGAA
GAAGGTGTACGCAGGAGGACTTGACAATAACATCCTCATGTGGGACTTAA
GCAAAGGTGGGGAGGAACCGGCGGATGTATACGAGGGGCATTCCGAGACA
GTGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTACCTGCTCTCGAACGC
CATGGACAATACGCTTCGACAATGGGATGTACGGCCATTCGTGACGGGCG
CACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACGGTTCGGACCGCAAC
CTCTTGCGGTGTGCCTGGTCATACGATGGAGAGATGGTGTCGGCAGGTTC
GGTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTCGGGGCAGGAGCTGT
ATTACTTGCCCGGGCACAAGGGCACGGTTAACGAGGTGGTGTTCCATCCT
AACGAACCCGTGATTGCATCGGCCTCGTCAGATAAAACCTGCTTCCTGGG
GGAGCTGGCTGGGTAGGGTTATGGGATAGATAAAGATGCGACACGTGAAA
AAAAGTGAAAACTTAATCTGAAAGTAAGTGATTGTCTCGGATGTTGT
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protein sequence of NO11G01260.1

>NO11G01260.1-protein ID=NO11G01260.1-protein|Name=NO11G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MEEGSETKRVGGADEGALVSVPQSSEALALTCAPAPGRTSHLAASTMLLT
GHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYNVLTGHTNAV
LDLKWSRDSTMIASASADKTLMIWDTNKGTRLRKCTEHTSCVNSVAAAGG
KASTGSVATLFATASDDKTVKLWDTRSRRAVETMEHRFQLLAVALSADGK
KVYAGGLDNNILMWDLSKGGEEPADVYEGHSETVTGLSLSPDGKYLLSNA
MDNTLRQWDVRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGS
VDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLG
ELAG*
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Synonyms
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