NO11G01170, NO11G01170 (gene) Nannochloropsis oceanica

Overview
NameNO11G01170
Unique NameNO11G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr11:422090..423676 -

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Properties
Property NameValue
DescriptionLamin Tail domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:422090..423676 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036415Lamin_tail_dom_sf
IPR001322Lamin_tail_dom
Homology
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BLAST of NO11G01170 vs. NCBI_GenBank
Match: EWM25118.1 (Lamin Tail domain protein [Nannochloropsis gaditana])

HSP 1 Score: 485.3 bits (1248), Expect = 1.900e-133
Identity = 248/448 (55.36%), Postives = 325/448 (72.54%), Query Frame = 0 
Query:    1 MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVVSNPDVTPLDLGGHYLCDK-DNHRFEFEDAYVLAPGADVHVYMCPGKHPVTEEEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAAPRVEGEE-----VEEDNGTAGP---EGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAGMVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIADRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFEVLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQRAPWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVPLPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV 440
            MRRL+EIPWLDE     TS     PRRRSI Y+ PPY+ +VD+ RE+I +SNP+  P+DL GH LCDK  +HR+EFE+ Y LAPGA++HVY  PGK+ V EEE+PG+LQI+LW T++ +PRRRE+L+  GD++TLID NG+EIAALEVT    V G++          GT      E  KRLYLY L +LQ+KYAK  VT+LQG+RLA MVL F+ VL N+L +YV+LE+    LD+AARY+DP+R PRSRQRVFAL+ADRL+SASLL VLMTG++E G    Y P+P+ RVRLG GMLL+++L+ WFEVLVE STR  +AA+DA  P+W+Q   P  EE ++VQ+GPYRKWLR +L R P L+T  TGGNHLFL+LAV RLA A  G  +  + + +  A R+   +PLP  + + W  L+ A+C + +YR +L+W EL+DL+ESK+
Sbjct:    1 MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVT----VNGDDXXXXXXXXXRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETG-GPLYGPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTR--LAAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL 441
The following BLAST results are available for this feature:
BLAST of NO11G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25118.11.900e-13355.36Lamin Tail domain protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL114nonsL114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR021ngnoR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002148NSK002148Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01170.1NO11G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591038gene_4997Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g16gene5401Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01170.1NO11G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01170 ID=NO11G01170|Name=NO11G01170|organism=Nannochloropsis oceanica|type=gene|length=1587bp
ATTACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCT
TCTCACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTC
ACGCGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACA
ACACGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTG
GCACATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTC
TACAAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGAT
TGTCGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACT
TGTGTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTG
GCACCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGT
GACGGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAA
AAGACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAG
ATCACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGAC
GGCAGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCG
CAGGGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTC
CAGATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCT
GGCGGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTG
CCTATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGG
TACATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTT
GATCGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGG
GCGTCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGT
CGTGTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTG
GTTCGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTG
ATGCCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAA
GCAATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCT
ACAACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGT
TCCTCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGA
CAATGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGT
TGTACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTG
CGATGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTG
ATGGATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCT
CGGTGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGC
TGAGCTGAAAATAGTGCGATCACGAAGTCAGGCAGTG
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protein sequence of NO11G01170.1

>NO11G01170.1-protein ID=NO11G01170.1-protein|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVV
SNPDVTPLDLGGHYLCDKDNHRFEFEDAYVLAPGADVHVYMCPGKHPVTE
EEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAA
PRVEGEEVEEDNGTAGPEGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAG
MVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIA
DRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFE
VLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQR
APWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVP
LPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV*
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Synonyms
Publications