NO11G01110, NO11G01110 (gene) Nannochloropsis oceanica

Overview
NameNO11G01110
Unique NameNO11G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr11:406080..406883 +

Link to JBrowse

Properties
Property NameValue
DescriptionBzip transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:406080..406883 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
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BLAST of NO11G01110 vs. NCBI_GenBank
Match: EWM25162.1 (bzip transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 1.400e-33
Identity = 107/251 (42.63%), Postives = 148/251 (58.96%), Query Frame = 0 
Query:    9 IFSNLFRKTTMPLPQTAPPISAAAALSIPGTAASI--DQERREQRLAKNREXXXXXXXXXXXXXXLLSERMCELNEELEDLRQATATSIDSLDMPTCEELHALRTYRFARLYRIISSPHICFWMWLHRQNFTCPXXXXXXXXXXXXKVGEHLMQLRQEQ-GGPQGWDARDGHKLWPLLCFELQLKGEQEERARALFGQASNVEMKDEMEALAGVVEAASVLEKDLKITTQHMQARMTAVRRLLTPAQIKIL 257
            IFS   ++T       + P  + AA++      ++  + +RREQRL     XXXXXXXXXXX    LS ++ + N ELEDLR    +++ S +  T +E  ALR YRFARL  ++  PH CFWMWL+R+                 K+GE L+Q +QEQ     GW+A+DG  LWPLLCFELQLKGEQEE+ +A+  QAS  EM  E+EAL  +  A   L KDL ++++ +     AVR +LT AQ+++L
Sbjct:   12 IFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLXXXXXXXXXXXXXXXXNLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASE-EMTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVL 261
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BLAST of NO11G01110 vs. NCBI_GenBank
Match: XP_005856299.1 (bzip transcription factor, partial [Nannochloropsis gaditana CCMP526] >EKU20079.1 bzip transcription factor, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 150.6 bits (379), Expect = 6.900e-33
Identity = 106/251 (42.23%), Postives = 147/251 (58.57%), Query Frame = 0 
Query:    9 IFSNLFRKTTMPLPQTAPPISAAAALSIPGTAASI--DQERREQRLAKNREXXXXXXXXXXXXXXLLSERMCELNEELEDLRQATATSIDSLDMPTCEELHALRTYRFARLYRIISSPHICFWMWLHRQNFTCPXXXXXXXXXXXXKVGEHLMQLRQEQ-GGPQGWDARDGHKLWPLLCFELQLKGEQEERARALFGQASNVEMKDEMEALAGVVEAASVLEKDLKITTQHMQARMTAVRRLLTPAQIKIL 257
            IFS   ++T       + P  + AA++      ++  + +RREQRL     XXXXXXXXXXX    LS ++ + N ELEDLR    +++ S +  T +E  ALR YRFARL  ++  PH CFWMWL+R+                 K+GE L+Q +QEQ     GW+A+DG  LWPLLCFELQLKGEQEE+ +A+  QAS  E   E+EAL  +  A   L KDL ++++ +     AVR +LT AQ+++L
Sbjct:   16 IFSVFRKQTPSAFRSGSLPHQSTAAVTPTTDTRNVLTESDRREQRLXXXXXXXXXXXXXXXXNLENLSAKLGQSNMELEDLRHVIESNLRSQEDCTEDERQALRAYRFARLRCLLFPPHACFWMWLNRRACVWTQQASSSQRISAAKIGETLIQEKQEQESETTGWEAKDGQTLWPLLCFELQLKGEQEEQVKAILSQASE-EKTQELEALQKMASAVGTLYKDLCVSSKRVDCTYEAVRGVLTRAQLQVL 265
The following BLAST results are available for this feature:
BLAST of NO11G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25162.11.400e-3342.63bzip transcription factor [Nannochloropsis gaditan... [more]
XP_005856299.16.900e-3342.23bzip transcription factor, partial [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002160NSK002160Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01110.1NO11G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591021gene_4989Nannochloropsis oceanica (N. oceanica CCMP1779)gene
ptbZIP8gene5391Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01110.1NO11G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01110 ID=NO11G01110|Name=NO11G01110|organism=Nannochloropsis oceanica|type=gene|length=804bp
ATGGAACCACCATCACCACGAGGTATCTTCTCCAACCTCTTCCGGAAGAC
TACGATGCCTCTTCCCCAAACTGCCCCTCCCATTAGTGCCGCTGCTGCCC
TTTCTATTCCGGGCACCGCCGCGAGCATAGACCAAGAGCGCCGGGAGCAG
CGTCTGGCCAAAAACAGAGAAAGTGCACGTCAGAGTCGACGGCGTAAGAA
GGAAAAGCTGGAGTTGCTGAGCGAGAGAATGTGTGAGCTGAACGAGGAGC
TTGAGGACCTTCGGCAAGCAACCGCGACAAGTATTGACTCCCTGGACATG
CCCACATGTGAAGAACTCCACGCCTTGCGGACATATCGCTTTGCCCGCTT
GTATCGCATCATTTCGTCACCCCATATTTGCTTTTGGATGTGGCTGCACA
GACAAAATTTTACATGTCCGCCGCCGTCATCCTCCTCCTCCACGACCTCG
GCCAGCAAAGTTGGAGAGCACCTGATGCAACTTCGACAAGAGCAAGGGGG
GCCACAAGGATGGGATGCTAGAGATGGACACAAACTGTGGCCGCTGCTTT
GCTTCGAGCTGCAACTCAAGGGCGAGCAAGAAGAGCGGGCCCGCGCCCTT
TTTGGACAAGCGTCGAACGTCGAAATGAAGGATGAAATGGAGGCCTTAGC
TGGCGTGGTAGAGGCTGCCAGCGTTTTGGAAAAAGACTTGAAGATCACAA
CTCAGCATATGCAGGCAAGAATGACTGCAGTGCGACGGCTTCTGACGCCG
GCACAGATAAAGATACTTGAGGGAGGGCGAAATATTGAGGTGGAAAGAGG
ATGA
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protein sequence of NO11G01110.1

>NO11G01110.1-protein ID=NO11G01110.1-protein|Name=NO11G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEPPSPRGIFSNLFRKTTMPLPQTAPPISAAAALSIPGTAASIDQERREQ
RLAKNRESARQSRRRKKEKLELLSERMCELNEELEDLRQATATSIDSLDM
PTCEELHALRTYRFARLYRIISSPHICFWMWLHRQNFTCPPPSSSSSTTS
ASKVGEHLMQLRQEQGGPQGWDARDGHKLWPLLCFELQLKGEQEERARAL
FGQASNVEMKDEMEALAGVVEAASVLEKDLKITTQHMQARMTAVRRLLTP
AQIKILEGGRNIEVERG*
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Synonyms
Publications