NO11G01100, NO11G01100 (gene) Nannochloropsis oceanica

Overview
NameNO11G01100
Unique NameNO11G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length870
Alignment locationchr11:404870..405739 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:404870..405739 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO11G01100 vs. NCBI_GenBank
Match: CEL93488.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 151.0 bits (380), Expect = 5.700e-33
Identity = 89/210 (42.38%), Postives = 128/210 (60.95%), Query Frame = 0
Query:   80 PAQAAGLAKINNELAGYGLPPIL--DVPGGFSPLVEVYGKAA--GARKERDTLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFFV--GDGPESGKIDQQSNEYFGEVVTRAIGQKSANVYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNIQALWIATTATRWKKIGDDCITMADSFRVY 284
            PA A    K N  L   GLPP+   DVP GF+ LV+V  ++   G  +ERD ++VQF+YPS W+V +P +DKNG+ GTI+AG+ QK ++AA FV   D    GK+  Q   ++  +V R I QK        K+L K   A+ S+  +Y +V ++YEL TGAGFTV R+GV +VT   K+++ L+ ATT  +++K+G     + DSFR Y
Sbjct:   88 PASAEPFDKQNKLLKVAGLPPVKPDDVPKGFNLLVDVLDQSEIYGRVRERDPVIVQFVYPSSWLVVRPVVDKNGQSGTITAGN-QKTETAALFVVPNDTGAKGKLKDQPMSFWEGLVGRWISQK-GETSSGLKILSKY-AAEASSSDEYMVVNYRYELATGAGFTVYRRGVGAVTTTDKSVECLFTATTEEKFRKVGPTLQKIVDSFRCY 294          
BLAST of NO11G01100 vs. NCBI_GenBank
Match: XP_005827071.1 (hypothetical protein GUITHDRAFT_113828 [Guillardia theta CCMP2712] >EKX40091.1 hypothetical protein GUITHDRAFT_113828 [Guillardia theta CCMP2712])

HSP 1 Score: 135.6 bits (340), Expect = 2.500e-28
Identity = 86/229 (37.55%), Postives = 124/229 (54.15%), Query Frame = 0
Query:   81 AQAAGLA--------KINNELAGYGLPPILDVPGGFSPLVEVYGKAAGAR------------------KERDTLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSANVYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNIQALWIATTATRWKKIGDDCITMADSFRVY 284
            A AAGLA         +N +L  YGL  +  VPGGF PL++  G +  A                   K  + +LV F YP  W+VS P    NGE GT+SAG+Y KGDSAA       ESGKI +Q  E+F +++T+ +   S N +Q FKV+KK+  ++  +G +   +E++Y+L+T +G  V R G A +  +G  + AL   +  TR+K + DD  T  DSFRV+
Sbjct:   72 ADAAGLAFGYSENLKDMNTQLEAYGLSKVASVPGGFKPLMQTIGGSVAANIDGSKIMDSIGSKVSVGLKSGERVLVLFNYPGSWIVSLPISTTNGESGTVSAGNYVKGDSAA-VSATILESGKIVEQGTEFFEKLLTQTV---SNNGWQGFKVIKKK-ASEPIDGNEAVDIEYRYDLIT-SGPVVGRHGFAKLVGLGTTVVALGATSADTRFKNLKDDLKTTTDSFRVH 294          
BLAST of NO11G01100 vs. NCBI_GenBank
Match: KOO31222.1 (hypothetical protein Ctob_006538 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 131.0 bits (328), Expect = 6.100e-27
Identity = 88/237 (37.13%), Postives = 120/237 (50.63%), Query Frame = 0
Query:   56 QVAGVGLAVNMAPLLMDGKVGFVQPAQAAGLAKINNELAGYGLPPILDVPGGFSPLVE---------VYGKAAGARKERDTLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSANVYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNIQALWIATTATRWKKIGDDCITMADSFRVY 284
            Q A   +A  +APL     V  V   +       N  L   G  P + V GGFSPLV+         + G  A  R  +  LLV+FLYPS W+V  PS+ +NGE G I A +Y KGDSA F     P   K+   S  +F   ++    Q + +V+++ KV KK       +G +  I+ F Y LLT AGFTV R+GVAS T     +  +  ATTA R+K++    +T+ DSFR Y
Sbjct:   33 QAAAALVATALAPLAAHADVRGVNENRPTNEKDCNALLTRLGYAP-MKVSGGFSPLVQFIGFDKPANIDGFKAKERAFQSPLLVRFLYPSGWLVESPSVTENGEAGNIGANNYIKGDSATFAAAPLPSGEKLTTLSKPFFQSWLS---SQMTKDVFEDVKV-KKISTVTQPDGTEMLIISFGYTLLTRAGFTVLRQGVASATITDNAVVGIVTATTALRYKELESQLMTICDSFRAY 264          
BLAST of NO11G01100 vs. NCBI_GenBank
Match: XP_005788828.1 (hypothetical protein EMIHUDRAFT_423306 [Emiliania huxleyi CCMP1516] >EOD36399.1 hypothetical protein EMIHUDRAFT_423306 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 125.6 bits (314), Expect = 2.600e-25
Identity = 98/264 (37.12%), Postives = 131/264 (49.62%), Query Frame = 0
Query:   32 STKQYAETTPGDS-SRLGFLQRVVGQVA-GVGLAVNMAPLLMDG-KVGFVQPAQAAGLAKINNELAGYGLPPILDVPGGFSPLVEVYGKAAGA------RKER---DTLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSANVYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNIQALWIATTATRWKKIGDDCITMADSFRVY 284
            S+ +     PG+  SR G L R     A    L+   A +  DG  V  V      G   +   L   G PP+  V  G SPLV+  G A  A      +KER    TLLV+FLYPS W+V  P++ +NGE G I+A +Y KGD A F     P  GK  +  ++ F  + T  + Q +A+VY++ KV K +     ++G     ++F Y LLT AGFTVDRKG A V  VG  I  L   TT  R+K +  D     +SFR Y
Sbjct:   19 SSIKLGRAAPGEGLSRRGLLARSAALAALPAPLSALAAGVASDGTTVRGVNEGMPTGEKDVAKFLQQQGFPPLPKV-NGLSPLVQYIGAAPPANIDGSKQKERAFDSTLLVKFLYPSGWLVETPTLTENGEAGKIAANNYLKGDFADFVAAKLP-PGKTLESIDKAF--LTTFLVSQMTADVYEDVKVGKVK-RLTAADGMDVAYIDFGYTLLTRAGFTVDRKGTACVHVVGGAIVGLVTGTTGQRFKSLEADLRACTESFRAY 277          
BLAST of NO11G01100 vs. NCBI_GenBank
Match: XP_005778537.1 (hypothetical protein EMIHUDRAFT_443487 [Emiliania huxleyi CCMP1516] >EOD26108.1 hypothetical protein EMIHUDRAFT_443487 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 124.0 bits (310), Expect = 7.500e-25
Identity = 97/264 (36.74%), Postives = 130/264 (49.24%), Query Frame = 0
Query:   32 STKQYAETTPGDS-SRLGFLQRVVGQVA-GVGLAVNMAPLLMDG-KVGFVQPAQAAGLAKINNELAGYGLPPILDVPGGFSPLVEVYGKAAGA------RKER---DTLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSANVYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNIQALWIATTATRWKKIGDDCITMADSFRVY 284
            S+ +     PG+  SR G L R     A    L+   A +  DG  V  V      G   +   L   G PP+  V  G SPLV+  G A  A      +KER    TLLV+FLYPS W+V  P++ +NGE G I+A +Y KGD A F     P  GK  +  ++ F  + T  + Q + +VY++ KV K +     ++G     ++F Y LLT AGFTVDRKG A V  VG  I  L   TT  R+K +  D     +SFR Y
Sbjct:   19 SSIKLGRAAPGEGLSRRGLLARSAALAALPAPLSALAAGVASDGTTVRGVNEGMPTGEKDVAKFLQQQGFPPLPKV-NGLSPLVQYIGAAPPANIDGSKQKERAFDSTLLVKFLYPSGWLVETPTLTENGEAGKIAANNYLKGDFADFVAAKLP-PGKTLESIDKAF--LTTFLVSQMTGDVYEDVKVGKVK-RLTAADGMDVAYIDFGYTLLTRAGFTVDRKGTACVHVVGGAIVGLVTGTTGQRFKSLEADLRACTESFRAY 277          
The following BLAST results are available for this feature:
BLAST of NO11G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
CEL93488.15.700e-3342.38unnamed protein product [Vitrella brassicaformis C... [more]
XP_005827071.12.500e-2837.55hypothetical protein GUITHDRAFT_113828 [Guillardia... [more]
KOO31222.16.100e-2737.13hypothetical protein Ctob_006538 [Chrysochromulina... [more]
XP_005788828.12.600e-2537.12hypothetical protein EMIHUDRAFT_423306 [Emiliania ... [more]
XP_005778537.17.500e-2536.74hypothetical protein EMIHUDRAFT_443487 [Emiliania ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002161NSK002161Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01100.1NO11G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591019gene_4988Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g30gene5390Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01100.1NO11G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01100 ID=NO11G01100|Name=NO11G01100|organism=Nannochloropsis oceanica|type=gene|length=870bp
ATGAAGCAGTCCGCGGCGCTTTTGTGCGTGCTGATGGGCGTGGCCCAAGG
CTTTGTCTTGCCGCAGCCGATGAGACTGGGGGAGGGTTGCGCAAGCACCA
AACAGTACGCGGAGACCACACCGGGCGACAGCAGCCGACTGGGATTCTTG
CAACGCGTGGTGGGGCAGGTGGCTGGCGTGGGGCTTGCGGTGAACATGGC
ACCCTTGCTCATGGATGGTAAGGTCGGATTTGTGCAGCCGGCGCAAGCGG
CGGGCTTGGCCAAGATCAACAACGAGTTGGCGGGCTACGGCTTGCCTCCT
ATTCTTGATGTTCCCGGAGGCTTCTCGCCATTGGTAGAAGTGTACGGCAA
AGCCGCGGGCGCCAGGAAAGAGCGTGATACGTTGTTGGTGCAGTTCTTGT
ACCCGAGTTTGTGGGTGGTGAGCAAGCCCAGCATTGACAAGAATGGGGAG
GAAGGCACTATCTCGGCCGGGGACTACCAAAAGGGCGACTCGGCCGCCTT
CTTTGTGGGGGACGGGCCCGAATCCGGCAAGATCGACCAGCAGTCGAACG
AGTATTTTGGGGAGGTGGTAACCCGCGCCATCGGACAAAAGAGCGCGAAT
GTCTACCAGAATTTCAAGGTGCTGAAAAAACGCCCGGGGGCCAAGGGGTC
GAATGGAGCGCAGTACACGATTGTGGAGTTTAAGTACGAGCTCTTGACTG
GCGCGGGCTTCACGGTGGACCGGAAGGGCGTGGCGAGCGTGACGCAGGTC
GGTAAGAATATACAGGCGTTGTGGATCGCCACGACGGCGACGCGCTGGAA
GAAGATTGGGGATGACTGTATTACCATGGCCGACTCTTTCCGGGTGTACG
ACGGAATCGCCCCTGCATAG
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protein sequence of NO11G01100.1

>NO11G01100.1-protein ID=NO11G01100.1-protein|Name=NO11G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MKQSAALLCVLMGVAQGFVLPQPMRLGEGCASTKQYAETTPGDSSRLGFL
QRVVGQVAGVGLAVNMAPLLMDGKVGFVQPAQAAGLAKINNELAGYGLPP
ILDVPGGFSPLVEVYGKAAGARKERDTLLVQFLYPSLWVVSKPSIDKNGE
EGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSAN
VYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQV
GKNIQALWIATTATRWKKIGDDCITMADSFRVYDGIAPA*
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Synonyms
Publications