NO11G01040, NO11G01040 (gene) Nannochloropsis oceanica

Overview
NameNO11G01040
Unique NameNO11G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr11:388942..390378 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:388942..390378 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO11G01040 vs. NCBI_GenBank
Match: EWM25159.1 (hypothetical protein Naga_100016g35 [Nannochloropsis gaditana])

HSP 1 Score: 225.7 bits (574), Expect = 1.600e-55
Identity = 127/246 (51.63%), Postives = 157/246 (63.82%), Query Frame = 0 
Query:    1 MAYVLNPRFLMGLSLTVICLALALGAVLTGEFANGMAVVSGSEGYASVKLGLWYGKSKRAGRREVFRYQWCDVDSPSFHGPHCTQLQVARTAACXXXXXXXXXXXXXXXXXXCTIKIPMEGQLTRMAAGLSATASFCFVVCLAVWTILVLSLSEKGDDSKAHLAIGMSWLAEGGAFIIAFLLTINMLQTAKRIEQEAS-ASILNAEEKTGWVEAGKASAAGGGDNPRKIEKPRAGRRSHGGGDLEA 246
            MA +LN  +L G+ +T +C+  ALGAVLT EFA+GMA+VSGS+G+A V LGLW+G +  AGRR+VFR +WCD  SPSF GP+C QLQV R AAC                    ++   E  LT++ AG  + A+ CF  CL VW  LV+SLS K +DSKA L+IGMSWLAEGGAFI+AFLL I MLQTA RIE EA  A+ +N   + G   +           P K EKPR+ R SHG GDLEA
Sbjct:    1 MALILNRLYLPGVFMTALCVIFALGAVLTAEFASGMAMVSGSDGFAKVNLGLWHGIAHIAGRRQVFRLEWCDASSPSFDGPYCAQLQVCRVAACAGVCLLVAVSVLLALLATNAVRTRFEAPLTKIVAGTFSMAALCFGTCLGVWVALVVSLSTKEEDSKARLSIGMSWLAEGGAFILAFLLAIKMLQTATRIEGEARIATDMNKRARNGTQTS----------YPNKPEKPRS-RPSHGAGDLEA 235
The following BLAST results are available for this feature:
BLAST of NO11G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25159.11.600e-5551.63hypothetical protein Naga_100016g35 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002167NSK002167Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01040.1NO11G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100016g35gene5385Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01040.1NO11G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01040 ID=NO11G01040|Name=NO11G01040|organism=Nannochloropsis oceanica|type=gene|length=1437bp
GTTGTTTTATCCCAGGGTGTTTCTCGCTCGCCATTGACACCGCGCCACGA
TGGGCCACCGTCTGACGGCTTTGCAAGTCGTTCCCACGTGGTTTGGACAA
TCAAATTCTCGATTACGCTTGCGTTTCTTGTCCAACAACACATGTTTACT
CCTTATCTGAGGTTCTTATGTATGATGTTAAATCGCAGGTCGCGCCCTTG
CAACAAGACTTTCAAGCGAACCGAGAACACACTTCAGCTAGCGGCGCGCT
CCGTGCCCCACGGCCCCGTCTTCCCCCAGCGAGCACCACGGGAGCCAAGA
CATCTCAAGTATGGCTTATGTATTGAATCCTCGTTTCTTGATGGgtaagt
gtttgctgggattgttgtgcatgccttttgtcccgaatctttcttgtctg
tctccttgccctgagctccaacgtacgcccgactccgccccggcgcttgc
tgtctttgacgaagtggagggtgttaagcaatcattttctctttagctcc
gtcactttgtatcgcatatcattaacaatgaagccttcgcctagcttcct
cattatgtcaggactgtgcgtccttctgtgctcctacatccagtctcggc
cacggcctcctcctttcccccacactaacctctttcattcccatctcaaa
tcaaccctacattattgaatttcacatcatatactgacagGATTATCTTT
GACCGTCATATGCTTGGCCCTGGCGTTGGGTGCCGTCCTGACAGGGGAGT
TTGCCAATGGGATGGCCGTGGTCAGCGGCAGTGAAGGCTATGCATCCGTG
AAGTTGGGTTTGTGGTACGGTAAATCCAAAAGGGCAGGTCGGCGCGAAGT
ATTTCGATACCAGTGGTGCGATGTCGATAGCCCTTCCTTCCACGGGCCCC
ACTGCACACAACTGCAGGTTGCTCGAACTGCGGCATGCACGGGTGTCTGT
CTTCTGGTCGCCCTGGTGGTCCTCCTTGTTCTCCTCACCACCTGCACCAT
AAAGATTCCTATGGAGGGGCAGTTGACGCGGATGGCTGCGGGATTGTCCG
CGACGGCCTCATTCTGTTTTGTGGTATGTTTGGCCGTGTGGACGATTCTG
GTCCTGTCGTTAAGCGAAAAGGGAGATGACAGCAAGGCCCACCTAGCGAT
CGGTATGTCCTGGCTGGCGGAAGGTGGTGCGTTTATCATCGCCTTCCTCC
TCACCATCAACATGCTTCAAACGGCCAAAAGAATAGAGCAGGAGGCGTCG
GCCTCCATCCTGAATGCCGAAGAGAAGACTGGCTGGGTGGAGGCAGGCAA
GGCAAGTGCTGCTGGCGGCGGTGACAACCCCAGGAAAATAGAAAAGCCAC
GGGCTGGCAGGCGCTCGCATGGCGGAGGAGACCTTGAGGCATAAGCATTC
ATATGTAAATGATTAACAAGTTATCTTTAAAGGAAAA
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protein sequence of NO11G01040.1

>NO11G01040.1-protein ID=NO11G01040.1-protein|Name=NO11G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MAYVLNPRFLMGLSLTVICLALALGAVLTGEFANGMAVVSGSEGYASVKL
GLWYGKSKRAGRREVFRYQWCDVDSPSFHGPHCTQLQVARTAACTGVCLL
VALVVLLVLLTTCTIKIPMEGQLTRMAAGLSATASFCFVVCLAVWTILVL
SLSEKGDDSKAHLAIGMSWLAEGGAFIIAFLLTINMLQTAKRIEQEASAS
ILNAEEKTGWVEAGKASAAGGGDNPRKIEKPRAGRRSHGGGDLEA*
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Synonyms
Publications