NO11G00960, NO11G00960 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO11G00960 vs. NCBI_GenBank
Match: EWM25134.1 (40s ribosomal protein s8 [Nannochloropsis gaditana]) HSP 1 Score: 349.0 bits (894), Expect = 1.100e-92 Identity = 183/215 (85.12%), Postives = 192/215 (89.30%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 216 MGI+RDSRHKRRHTGGKRPSYRKKRKFE+GRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSET A+KTRILDVVYNASNNELVRTKTLVKSA+VQIDA PFRQY+EQHYGQEVGS K KS+H LRKLAKRKG+LE+HLEEQFASGRLLA I+SRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK Sbjct: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGS--KXXXXXXXXXXXXXXXXXKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_005856295.1 (small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526] >EKU20075.1 small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 305.8 bits (782), Expect = 1.000e-79 Identity = 160/192 (83.33%), Postives = 169/192 (88.02%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADG 193 MGI+RDSRHKRRHTGGKRPSYRKKRKFE+GRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSET A+KTRILDVVYNASNNELVRTKTLVKSA+VQIDA PFRQY+EQHYGQEVGS K KS+H LRKLAKRKG+LE+HLEEQFASGRLLA I+SRPGQSGRADG Sbjct: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGS--KXXXXXXXXXXXXXXXXXKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_009524162.1 (hypothetical protein PHYSODRAFT_285611 [Phytophthora sojae] >EGZ21445.1 hypothetical protein PHYSODRAFT_285611 [Phytophthora sojae]) HSP 1 Score: 273.1 bits (697), Expect = 7.500e-70 Identity = 152/213 (71.36%), Postives = 170/213 (79.81%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLA--KRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGGKR YRKKRKFELGR A TKL G KRVH VR RGG+LKFRAL LETGNF+W +E A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK A+ TE E VKKS+H LRKLA +R +L+ L+EQ ASGRLLA I+SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRETGGKRKQYRKKRKFELGRQPANTKL----GGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKTEEEEVKKSDHVLRKLAARQRTRELDAKLDEQVASGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKK 202
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CCA22399.1 (40S ribosomal protein S82 putative [Albugo laibachii Nc14]) HSP 1 Score: 271.6 bits (693), Expect = 2.200e-69 Identity = 148/213 (69.48%), Postives = 169/213 (79.34%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGGKR YRKKRKFELGR A TKL G KRVH VR RGG+ KFRALRLETGNF+W SE ++KTRILDVVYNASNNELVRTKTLVKSA+V IDATPFRQ+YE HYG ++G KK A T + E KKS+H +RKLA+R+ + L+EQF SGR+LAC++SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRDTGGKRKQYRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAIVSIDATPFRQWYETHYGVKIGQKKN------AETTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDEQFTSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CBJ28525.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 270.0 bits (689), Expect = 6.300e-69 Identity = 147/213 (69.01%), Postives = 168/213 (78.87%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGG+R YRKKRKFE+GRPAA TKL G KRVH VR RGGN+K+RALRL++GNF+W +E +KTRILDVVYNASNNELVRTKTLVK+A+V +DA PF+ +YE HYG +G KK + A E EAV KS+H RKLAKR+ D L T L+EQ ASGR LACI+SRPGQSGR DGYILEGKELEFYQK LAKKK Sbjct: 1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKL----GHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGK-----KAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 204
BLAST of NO11G00960 vs. NCBI_GenBank
Match: GAX92731.1 (40S ribosomal protein S8 [Pythium insidiosum]) HSP 1 Score: 270.0 bits (689), Expect = 6.300e-69 Identity = 148/213 (69.48%), Postives = 168/213 (78.87%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGGKR YRKKRKFELGR A TKL G KRVH VR RGGN KFRALRL+TGNF+W +E ++KTRILDVVYNASNNELVRTKT+VK +V IDATPFRQ+YE HYG ++G KK A +T + EA KKS+H RK+A R+ D L+ L+EQFASGRLLA I SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRETGGKRKQYRKKRKFELGRQPANTKL----GHKRVHTVRVRGGNTKFRALRLDTGNFSWGTEVLSRKTRILDVVYNASNNELVRTKTIVKGCIVSIDATPFRQWYEAHYGAKIGQKKN------AVETADDEA-KKSSHVQRKIANRQRDRVLDVKLDEQFASGRLLAAIASRPGQSGRADGYILEGKELEFYQRKLATKK 202
BLAST of NO11G00960 vs. NCBI_GenBank
Match: OWZ16065.1 (40S ribosomal protein S8-2 [Phytophthora megakarya]) HSP 1 Score: 269.6 bits (688), Expect = 8.200e-69 Identity = 149/213 (69.95%), Postives = 169/213 (79.34%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRK--GDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 +GI+RDSRHKRR TGGKR YRKKRKFELGR A TKL G KRVH VR RGG+LKFRAL LETGNF+W +E A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK A+ E E VKKS+H LRKLA R+ +L+T ++EQ +SGRLLA I SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 12 VGISRDSRHKRRETGGKRKQYRKKRKFELGRQPAATKL----GGKRVHTVRTRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKQEEEDVKKSSHVLRKLANRQRTRELDTKIDEQVSSGRLLAVIASRPGQSGRADGYILEGKELEFYQRKLATKK 213
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_008905363.1 (40S ribosomal protein S8 [Phytophthora parasitica INRA-310] >ETI47179.1 40S ribosomal protein S8 [Phytophthora parasitica P1569] >ETK87132.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETL93691.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETM46929.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETN09530.1 40S ribosomal protein S8 [Phytophthora parasitica INRA-310] >ETO75860.1 40S ribosomal protein S8 [Phytophthora parasitica P1976] >KUF89735.1 40S ribosomal protein S8 [Phytophthora nicotianae]) HSP 1 Score: 265.8 bits (678), Expect = 1.200e-67 Identity = 148/213 (69.48%), Postives = 167/213 (78.40%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGGKR +RKKRKFELGR A TKL G KRVH VR RGG+LKFRALRLETGNF+W +E A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK A E E VKKS+H LRKLA R+ L+ ++EQ SGRLLA I+SRPGQSGRADGY+LEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKL----GGKRVHAVRVRGGHLKFRALRLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------APQHEEEEVKKSDHVLRKLANRQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKK 202
BLAST of NO11G00960 vs. NCBI_GenBank
Match: EPZ31448.1 (40S ribosomal protein S8-B [Rozella allomycis CSF55]) HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67 Identity = 143/213 (67.14%), Postives = 166/213 (77.93%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKR HTG KR YRKKRKFELGR A TKL G KR+H VR RGGN KFRA+RL+TGNF+W SE +KTRI+DVVYNASNNELVRTKTLVKSA+VQIDATPFRQ+YE HYG +G KK +A AA T +A KKSNH RK+ RK D ++ L++QF++GRL ACI+SRPGQSGR DGYILEGKELEFY K++ +K Sbjct: 1 MGISRDSRHKRSHTGAKRAQYRKKRKFELGRQPANTKL----GAKRIHPVRVRGGNTKFRAMRLDTGNFSWGSEAITRKTRIIDVVYNASNNELVRTKTLVKSAIVQIDATPFRQWYEAHYGSLLGKKK----LAKAASTEAGDAEKKSNHVQRKIESRKKDAHVDQALDDQFSTGRLYACISSRPGQSGRCDGYILEGKELEFYVKKIKARK 205
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CCI48864.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67 Identity = 145/213 (68.08%), Postives = 167/213 (78.40%), Query Frame = 0 Query: 1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212 MGI+RDSRHKRR TGGKR +RKKRKFELGR A TKL G KRVH VR RGG+ KFRALRLETGNF+W SE ++KTRILDVVYNASNNELVRTKTLVKSAVV IDATPFR +YE HYG ++G KK T + E KKS+H +RKLA+R+ + L++QF SGR+LAC++SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAVVSIDATPFRHWYETHYGVKIGVKKN------TESTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDDQFMSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203 The following BLAST results are available for this feature:
BLAST of NO11G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G00960 ID=NO11G00960|Name=NO11G00960|organism=Nannochloropsis oceanica|type=gene|length=648bpback to top protein sequence of NO11G00960.1 >NO11G00960.1-protein ID=NO11G00960.1-protein|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bpback to top Synonyms
Publications
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