NO11G00840, NO11G00840 (gene) Nannochloropsis oceanica

Overview
NameNO11G00840
Unique NameNO11G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2937
Alignment locationchr11:333715..336651 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:333715..336651 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00840.1NO11G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590923gene_4957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00840.1NO11G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00840 ID=NO11G00840|Name=NO11G00840|organism=Nannochloropsis oceanica|type=gene|length=2937bp
ATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCGATGGAGC
CCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGTGACTGGC
CAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCACTCGCTT
ACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGCTCAAGCA
CGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGGCATACAC
ATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAGGACAAGC
AGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATTCAGAAGT
GTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACAAGCCCAC
GTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATCGTTGATC
CGgtaggggcagaaggtgaagagaaggaactgaggcatctgcctgacgac
aagagactgctattgatgatccacatgctcctcacaacttttcctcccta
tcgctgcaaagagcagggaggaccactgtgcgcaattcccgtgggatttc
tctttgtccccctgttcatagGGTGGCTAGCATCCCTAGGTCGTCCAATT
CTGTACCATCCTCCCCCGTTGCCGCGATTTACACTTTTACCAGCTGTATT
GCTGTACAGGCATTGGTGGAATCGGAAGCCTTGGGGCCTGATGGGCAAGG
GCAATGGAAGAAGCCGACGAAGGCCGCAAAAATATCAAATAGGATGAGGA
CGAGGACGATGGCAGCCTTCATCTGTAATTTGGGAGAGACTGGACGCGCT
GGTCGTTTGgtaaggtcgaacttctagagaaagggcgttccgtgtgcgct
gctgcggacctactcttgcacttcggcaccgagatcgacaccttctggcc
catggagggtcgactgcgtgaacctaaataggtcggttgaccagcttgca
gggaggagtttgcttctatcggcaaatcgcgcttctcgtccatcttgggc
tccggaacgtttggagattgtggtggttccccttgaaacgaagGCGAAGG
AGCAAAACGCTGCCGCCATGCTTTCCATGCTAGCGCCTGCTCACGCCTGT
GGGCCTGCAAAGGGAGGAGCCTTGGAGGCTCACATGCAGgtatttgaggg
gctagaggaattaatttgtcggtacgaactaacagatctctttgcacgcg
ttgattggcatgaccattccttgataaagGCGGGCTGCGCCAGATATGGG
GGCCGGCACACATGCAGCTATACCTTTTTTCTTTCCCTCAATCGATTCTT
TCAACTGCTCCTAGAAAAGTGCAGATCTAAACTTTTCCTGCGCGTCTGTA
TGTTGACCCTTATCGTCACCACATCGAAGgtaaataaatcacaggaggca
ctttctactcatgggttcatcttttctagcatccaattttcaagaacata
tcaggcaaaagtgcgcttcttcccataaaggatttccgcaggaaacaact
gatagcatgctgcatattgtgagggctaattacctttagcttgaaaatcg
tcctttttttctcatgcatgaggaatcagagagtatctccgggtgttcat
ccatttcctccttgttttccacaaaggaaatccatttccttctatgttcg
ttcgtcctcgcagcctcatctgccttctaccgcgttcaatctctaccatt
tctcctctccatcttacccacgtcacctcttcactttcttcccgtgcgca
gCGGTACAATTTTCGTGAAGACACGAAAAGGTCTGAAAATACATGTGGAA
GCTTACAAGCAGAGTCGACATCGACTAAACTAGTCAGCCTCCACAACCGG
GAGAGGCATCCAAAGAGGAGCCAAAGAGGAGATGGATCAGTAGCAGGAGG
AGGAGGGAAAGGAGAAGAAGGAGATGGAGGGGGGGAGGAGGAAGTGGAGG
AGGTGGACGGGAAGGGAGACGAGGAGAAGAAGAAGAAGAAGAAGAAGAAA
GATAAGAGGAGGAGGAAGAAGAAGGAGATCAACAAGAAGGAGAAAGAGGA
GAAGAAGAAGAGGAACAAGAAGAGGAAGAGGAAGAAGGAGGAGGGTGAGA
CGGAGGGAGACGAGGAGGAAATGGACGAGAAGGGAGACGAAAGAGAGATA
GAGGGAGAGAAGGAGGAAAgtaggagaagggagagtgagaaaagagggaa
gggtgcgaggaggattggaaaggggagaaggaggaggaggaggcagaggg
ggaggatcagTAGCAGGAGGAGGAGGAGGAGAAGGGAGAGGCGGCGGAGG
AAGAGGAGGAGATAGGGAGGCGGAGGCGGTGGAAACAGAGGAGGCGGTGG
AAGCAGAGGAGGAGATGGAGGAGGAGGAGGCAGAGGCAGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGCTGAGGCGGAGGAGGAGGAGGAGGTCACGGG
CGGGCCATCCGAGGACTGTATTGGTGTAACACCTGTGAACAGTTCGTGTC
TCGGGACGGCAATGGGGCACGTAACATCCTGCGGGTGTACAGGAGTATGG
TCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTCCGTCAATCGCGGCAG
GATAAGCGGACACTCTATGTGTAGCCTCCCCGCTGACCTCCTCTTTTATC
CCCCTCACCTTTCTCCTCCTGGCCCTGTGTGGGCAGTCCGGAGACTGCCT
GATGAAAAACCTGTCAGTCGCTAGTAAATTTCGGGCAAGGGATAAGGGGT
GAATAGGCAATATTTTATTGTTGGAAGGCTCCCCATCGTATGCAAGTCCT
AGAGGATGTCAGGTTGCATGCGATTGTTCTAGAGGGATGGAGGAACAGAA
AAAAAGAGCTAAATGACACCTCACAGCTCCACTCCAC
back to top

protein sequence of NO11G00840.1

>NO11G00840.1-protein ID=NO11G00840.1-protein|Name=NO11G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MIERTFRGLKKKTGDGALDVDLWNDAGNEKSDWPDARSESSPSSRLYHSL
TAWTGPMPEAFSFMLKHGPLERMLRQSQRARHTHKLNLRDPIVNQALRTS
STSNDDISGMYAAHSEVYLVYSDDLLEPQETSPRGQETFNGDSSVPRSLI
RVASIPRSSNSVPSSPVAAIYTFTSCIAVQALVESEALGPDGQGQWKKPT
KAAKISNRMRTRTMAAFICNLGETGRAGRLAKEQNAAAMLSMLAPAHACG
PAKGGALEAHMQAGCARYGGRHTCSYTFFLSLNRFFQLLLEKCRSKLFLR
VCMLTLIVTTSKRYNFREDTKRSENTCGSLQAESTSTKLVSLHNRERHPK
RSQRGDGSVAGGGGKGEEGDGGGEEEVEEVDGKGDEEKKKKKKKKDKRRR
KKKEINKKEKEEKKKRNKKRKRKKEEGETEGDEEEMDEKGDEREIEGEKE
EIAGGGGGEGRGGGGRGGDREAEAVETEEAVEAEEEMEEEEAEAEEEEEE
EEEEAEAEEEEEVTGGPSEDCIGVTPVNSSCLGTAMGHVTSCGCTGVWSV
EKLVPMIFGSVNRGRISGHSMCSLPADLLFYPPHLSPPGPVWAVRRLPDE
KPVSR*
back to top
Synonyms
Publications