NO11G00770, NO11G00770 (gene) Nannochloropsis oceanica

Overview
NameNO11G00770
Unique NameNO11G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length321
Alignment locationchr11:314104..314424 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransmembrane protein 14
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:314104..314424 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349UPF0136_TM
Homology
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: EWM25087.1 (transmembrane protein 14 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 1.700e-35
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = 0 
Query:    1 MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            MGGSAHA+YAVG +LCAGGLAG+VR +SKPSL AGVGLG++M+VSG +IQ G+D RGHT ALI SGLVV GTLPRA+KTQK+VP A+AL GLVS  YQG+KV EW
Sbjct:    1 MGGSAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: GBG26146.1 (TMEM14 protein-like YJR085C [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 92.0 bits (227), Expect = 1.200e-15
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0 
Query:    1 MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            M G AH +Y +G LL AGG+ G+V+ +S PSLVAG   GT   +SG++IQ  +  RGHT  L  S L++    PRA++T+  VP AV+ +G V   Y G K  EW
Sbjct:    1 MTGEAHLSYTMGGLLAAGGIMGYVKGKSVPSLVAGCCFGTGFAISGWLIQQNDAYRGHTLGLGLSTLLLGAMAPRALRTKAPVPVAVSSLGAVGVVYSGTKALEW 105
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: XP_005831867.1 (hypothetical protein GUITHDRAFT_109307 [Guillardia theta CCMP2712] >EKX44887.1 hypothetical protein GUITHDRAFT_109307 [Guillardia theta CCMP2712])

HSP 1 Score: 87.8 bits (216), Expect = 2.200e-14
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 0 
Query:    1 MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAA-VALVGLVSAFYQGQKVREW 106
            MGGSAH ++ + A+L AGG+  + +  SK SL+AG  +G + L SG +IQ G +  GH  AL +S  +  G   RA++TQK +PA  VA +G+ S  YQG+KV EW
Sbjct:    1 MGGSAHMSFTMAAVLTAGGIYAWTKKGSKASLIAGSAVGALFLGSGLLIQSGQNKSGHLLALASSLALATGMGHRAIQTQKFMPAGLVATLGVASILYQGKKVNEW 106
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: XP_018298401.1 (hypothetical protein PHYBLDRAFT_55743 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD80361.1 hypothetical protein PHYBLDRAFT_55743 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 85.5 bits (210), Expect = 1.100e-13
Identity = 45/104 (43.27%), Postives = 71/104 (68.27%), Query Frame = 0 
Query:    4 SAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQ--KIVPAAVALVGLVSAFYQGQKVREW 106
            S+H A+ + AL   GG+AGF R RS PSL+AGVG+G++  V+GY+I++  D  GH  A++ S L+  G +PRA+KTQ  K VP A++++ + +  Y  +KV ++
Sbjct:    2 SSHTAFTMAALSATGGIAGFARTRSFPSLIAGVGIGSLYGVAGYLIKENKDY-GHETAVVASTLLAGGMIPRAIKTQFKKPVPVALSVISIAAGAYYVKKVIDY 104
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: ORZ23440.1 (transmembrane proteins 14C-domain-containing protein [Absidia repens])

HSP 1 Score: 84.0 bits (206), Expect = 3.200e-13
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 0 
Query:    4 SAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            S H AYA+ AL  AGG+ GF R RS PSL+AGVGLGT+   +GYI Q+  ++ G+  A+ +S ++    +PRA+KT+K VP A+AL  L +  Y  +KV ++
Sbjct:    2 SHHPAYAMSALCFAGGIGGFARTRSLPSLIAGVGLGTLYGAAGYISQE--NVNGYKLAVGSSVVLAGAMIPRAIKTKKPVPIALALTSLAAGAYYTKKVIDY 101
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: OBZ90268.1 (hypothetical protein A0J61_01677 [Choanephora cucurbitarum])

HSP 1 Score: 82.8 bits (203), Expect = 7.100e-13
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:    4 SAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            S H +Y +  L  AGG+AGF R RS PSLVAG+G+G +   +GY++Q+  D  GH  A+  S ++    +PRAVKT+K VP A++L+ L +  Y  +KV E+
Sbjct:    2 SHHPSYTMAGLCAAGGIAGFARTRSVPSLVAGLGVGALYGTAGYLMQENKDY-GHETAVAASVILGGAMIPRAVKTRKPVPIALSLISLAAGSYYVKKVIEY 102
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: XP_023465798.1 (TMEM14-domain-containing protein [Rhizopus microsporus ATCC 52813] >CEG76851.1 Putative UPF0136 domain protein [Rhizopus microsporus] >CEG70328.1 Putative UPF0136 domain protein [Rhizopus microsporus] >CEJ04563.1 Putative UPF0136 domain protein [Rhizopus microsporus] >CEI90588.1 Putative UPF0136 domain protein [Rhizopus microsporus] >ORE11617.1 TMEM14-domain-containing protein [Rhizopus microsporus var. microsporus] >ORE22139.1 TMEM14-domain-containing protein [Rhizopus microsporus] >PHZ12090.1 TMEM14-domain-containing protein [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 82.0 bits (201), Expect = 1.200e-12
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 0 
Query:    4 SAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            S H +Y +  L  AGG+AGFVR RS PSL AG+G+G +   +GY+IQ   D  GH  A+  S ++    +PRA+KT+K VP A++++ L +  Y  +KV E+
Sbjct:    2 SHHPSYTMAGLCAAGGIAGFVRTRSVPSLAAGLGVGALYGAAGYLIQQNRDY-GHETAVAASVILGGAMIPRAIKTRKPVPVALSVISLAAGTYYVKKVIEY 102
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: KZN84913.1 (TMEM14 protein-like protein [Penicillium chrysogenum])

HSP 1 Score: 80.9 bits (198), Expect = 2.700e-12
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = 0 
Query:    6 HAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKT--QKIVPAAVALVGLVSAFYQGQKVREWR 107
            H ++ + ALL AGGLAG+++ RS PSL+AGVGLG     SGY+I++  D  G   AL  S L++   +PR +KT  +  VP A+   GL++++Y  +KVRE+R
Sbjct:    4 HPSFTLAALLPAGGLAGYLKTRSAPSLIAGVGLGISYAYSGYLIKENRDY-GTELALGNSVLLLGSAIPRIIKTGAKAPVPLALGATGLLASYYYQKKVREFR 105
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: SAM02906.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 80.5 bits (197), Expect = 3.500e-12
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 0 
Query:    4 SAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQKVREW 106
            S H AY++ AL   GG+AGF R +S PSL AG+G+G +  V+GY+I + N   GH  A+ TS L+    LPRA+KT+K +P A+A+  L +  Y  +KV ++
Sbjct:    2 SHHTAYSMSALCVTGGIAGFARTKSLPSLFAGIGIGGLYGVAGYLIGE-NANGGHELAVGTSVLLTGAMLPRAIKTRKPLPIALAVTSLAAGAYYTKKVIDY 102
[Close]
BLAST of NO11G00770 vs. NCBI_GenBank
Match: OTA99937.1 (hypothetical protein M426DRAFT_324741 [Hypoxylon sp. CI-4A])

HSP 1 Score: 80.5 bits (197), Expect = 3.500e-12
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:    6 HAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQDGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALV--GLVSAFYQGQKVREWR 107
            H ++ + ALL AGG AGF+R +S+PSL+AG+GLG     SGY+I+ GN   G   AL  S L++   +PR +KT+   P  + L+  G+++ FY  +KVRE+R
Sbjct:    4 HPSFTLAALLAAGGTAGFIRTKSRPSLIAGLGLGASYAFSGYLIK-GNKDYGTELALGNSVLLLGSAVPRVIKTKARAPVPLGLLAAGVLATFYYQKKVREFR 105
The following BLAST results are available for this feature:
BLAST of NO11G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25087.11.700e-3574.29transmembrane protein 14 [Nannochloropsis gaditana... [more]
GBG26146.11.200e-1545.71TMEM14 protein-like YJR085C [Aurantiochytrium sp. ... [more]
XP_005831867.12.200e-1445.28hypothetical protein GUITHDRAFT_109307 [Guillardia... [more]
XP_018298401.11.100e-1343.27hypothetical protein PHYBLDRAFT_55743 [Phycomyces ... [more]
ORZ23440.13.200e-1346.08transmembrane proteins 14C-domain-containing prote... [more]
OBZ90268.17.100e-1344.12hypothetical protein A0J61_01677 [Choanephora cucu... [more]
XP_023465798.11.200e-1243.14TMEM14-domain-containing protein [Rhizopus microsp... [more]
KZN84913.12.700e-1244.66TMEM14 protein-like protein [Penicillium chrysogen... [more]
SAM02906.13.500e-1244.12hypothetical protein [Absidia glauca][more]
OTA99937.13.500e-1243.69hypothetical protein M426DRAFT_324741 [Hypoxylon s... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002196NSK002196Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00770.1NO11G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590900gene_4946Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g65gene5357Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00770.1NO11G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00770 ID=NO11G00770|Name=NO11G00770|organism=Nannochloropsis oceanica|type=gene|length=321bp
ATGGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGC
AGGAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTG
CTGGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAG
GATGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATT
GGTGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGC
CTGCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAA
AAGGTTCGGGAGTGGCGTTGA
back to top

protein sequence of NO11G00770.1

>NO11G00770.1-protein ID=NO11G00770.1-protein|Name=NO11G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQ
DGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQ
KVREWR*
back to top
Synonyms
Publications