NO11G00590, NO11G00590 (gene) Nannochloropsis oceanica

Overview
NameNO11G00590
Unique NameNO11G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr11:253608..255020 -

Link to JBrowse

Properties
Property NameValue
DescriptionLeucine-rich repeat, ribonuclease inhibitor subtype
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:253608..255020 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO11G00590 vs. NCBI_GenBank
Match: EWM25141.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 224.6 bits (571), Expect = 6.600e-55
Identity = 146/311 (46.95%), Postives = 182/311 (58.52%), Query Frame = 0 
Query:   23 QPTHLATLPFPLGWQLICDNLMTPDIMRLAQTSRDHLGVGFSMVQHLVLRLDDADQDHG-GNEGTHA--ASQSVTMQLSHLLARCPHLETLSCWSLASKKSIYLGRAL------CLQPCFP--RLRVLALTNAGLGAEGLRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRG-GSGDGTTDKGGDVHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSXXXXXXXXXXXXXXGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLEILSLDGNVLGPTGTAHLAHAF 322
            QP  LA LP+P+GW+L+CD L T DI+ LAQT+ +HL +GFSM+QHL LR+ + D++ G   EG  +   S++V   L+  L+RC  L++LSC SL   K   LG A+      CL    P  R+RVLAL++AGL  EGL  LLPS    PALEELLLDGNALGNQGV+A +R LRG G  D     GG V     +  + Q LKVLSLA+NGIG  GA ELALLL+G G+               G     S++L                   Q+Q  +  H C  LE L LDGNVLGP+GTAHLA AF
Sbjct:   32 QPIPLARLPYPVGWRLVCDFLGTHDIIHLAQTTSEHLNMGFSMIQHLTLRIREEDENLGRKGEGCQSMCTSRAVGSHLARFLSRCVELDSLSCRSLTFSKGECLGDAMRQLRIRCLHSPSPLSRVRVLALSHAGLRVEGLLHLLPSLHLFPALEELLLDGNALGNQGVRAFSRSLRGLGWKD---SDGGRVSERFSSMGTGQCLKVLSLASNGIGTAGANELALLLSGAGNG-------DVRAWNGGDAHPASAVLE----------------TSQHQSLSQRHPCALLEALCLDGNVLGPSGTAHLARAF 316
The following BLAST results are available for this feature:
BLAST of NO11G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25141.16.600e-5546.95Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002212NSK002212Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00590.1NO11G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590830gene_4923Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g82gene5340Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00590.1NO11G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00590 ID=NO11G00590|Name=NO11G00590|organism=Nannochloropsis oceanica|type=gene|length=1413bp
ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC
TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT
TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT
TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA
GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG
AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG
TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC
TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC
CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT
CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT
ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC
GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT
GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT
ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC
TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT
CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG
CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA
TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA
ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT
TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC
TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC
TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA
TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG
GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC
GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG
ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA
CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC
GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT
GCTAGTGTTGTAA
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protein sequence of NO11G00590.1

>NO11G00590.1-protein ID=NO11G00590.1-protein|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MWIPSTEARANTAANEPLSRLRQPTHLATLPFPLGWQLICDNLMTPDIMR
LAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGNEGTHAASQSVTMQLSHL
LARCPHLETLSCWSLASKKSIYLGRALCLQPCFPRLRVLALTNAGLGAEG
LRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRGGSGDGTTDKGGD
VHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSAGAAAPPP
PPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLE
ILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEGLRELLSA
FAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLNLNFTFIG
EHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATAATVGDVG
GIGGRRGERREDGREAVLVL*
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Synonyms
Publications