NO11G00560, NO11G00560 (gene) Nannochloropsis oceanica

Overview
NameNO11G00560
Unique NameNO11G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length363
Alignment locationchr11:246065..246427 +

Link to JBrowse

Properties
Property NameValue
DescriptionEsterase lipase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:246065..246427 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
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BLAST of NO11G00560 vs. NCBI_GenBank
Match: EWM25102.1 (esterase lipase [Nannochloropsis gaditana])

HSP 1 Score: 85.9 bits (211), Expect = 9.500e-14
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   31 ETVPMLLINAEMDFHLEEDAMELVEELEGGKEGRREGKLMVERKRVVVPGTDHISLVQELGMK-XXXXXXXXXXXTVLEGHVFDFIHRHS 120
            E VP+LL+NAE DFHL ED  EL++EL GG+EG       VER R VVPGTDH+SLV+ LG K            +VLE  VF FIHRH+
Sbjct:  332 ELVPLLLLNAERDFHLNEDTEELLKELRGGREGGD-----VERARAVVPGTDHLSLVEGLGAKRGKEEEGREGERSVLEDLVFSFIHRHA 416
The following BLAST results are available for this feature:
BLAST of NO11G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25102.19.500e-1454.44esterase lipase [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00560.1NO11G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674585gene_10288Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|630648gene_4920Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g85gene5338Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00560.1NO11G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00560 ID=NO11G00560|Name=NO11G00560|organism=Nannochloropsis oceanica|type=gene|length=363bp
ATGGCCTTTGGCCTCACCAGTGCATTTGTTGAGGAGGGCGAGGGGGAGGA
AAGGGGGGGCAAGGGGGAAAGGGAGGTGGGTTTGCCACTGGAAACAGTGC
CTATGTTGTTGATTAATGCGGAGATGGATTTCCACTTGGAGGAAGACGCG
ATGGAGCTGGTGGAGGAGCTGGAGGGAGGGAAGGAGGGAAGGAGGGAAGG
GAAGTTAATGGTTGAGAGAAAGAGGGTGGTTGTACCGGGAACGGATCATA
TTTCGTTGGTGCAGGAATTGGGGATGAAAGAGGGAGGGGGGGAGGGAGGG
AGGGAGGGGAGGACGGTGCTGGAGGGGCACGTGTTTGACTTTATTCACCG
GCACTCACAGTGA
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protein sequence of NO11G00560.1

>NO11G00560.1-protein ID=NO11G00560.1-protein|Name=NO11G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MAFGLTSAFVEEGEGEERGGKGEREVGLPLETVPMLLINAEMDFHLEEDA
MELVEELEGGKEGRREGKLMVERKRVVVPGTDHISLVQELGMKEGGGEGG
REGRTVLEGHVFDFIHRHSQ*
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Synonyms
Publications