NO11G00440, NO11G00440 (gene) Nannochloropsis oceanica

Overview
NameNO11G00440
Unique NameNO11G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5642
Alignment locationchr11:188268..193951 -

Link to JBrowse

Properties
Property NameValue
DescriptionC6 finger domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:188268..193951 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO11G00440 vs. NCBI_GenBank
Match: EWM25191.1 (c6 finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 6.900e-16
Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = 0 
Query:  772 EELDVLSFLRVGKDLTTAGAACCSVAWCNGTPVERHVNERFHAMFMPRSTFLASSLLPFLLWAEFIAPEAREIFFDSLLALSLTKAAAAAVETKMYLPVLDRWGLKLPATVHLRVFLSGDGELSAAMLLIEP 904
            +E  +L+FLRVGK ++  G ACC++ +     V   VNERF   FM R++  AS+L+P LLW + IA E+R+ + D  L L +   +    E +  L V DR G+ +PA V LR F+S +G + A ML IEP
Sbjct:  440 DEERMLTFLRVGKGISHCGPACCTIGFHRDAGVSVDVNERFENRFMSRNSLQASTLIPPLLWQQCIASESRDAYVDIFLNL-VFGPSPVPTEVRSELLVQDRGGVIVPARVCLRYFVSDNGNMHAIMLAIEP 570
The following BLAST results are available for this feature:
BLAST of NO11G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25191.16.900e-1641.67c6 finger domain-containing protein [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007480NSK007480Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00440.2NO11G00440.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G00440.1NO11G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|319686gene_10271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00440.2NO11G00440.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G00440.1NO11G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00440 ID=NO11G00440|Name=NO11G00440|organism=Nannochloropsis oceanica|type=gene|length=5642bp
ATGTCCCTACCAAAACGGCGTGGAAGTGACGAGGGGCGTTGTAGCAAGTC
GCAACCAAGCAATGTCCGTGACGGTGACTTGGGCACGGATGAAAAGCGAC
GACGAAAGGAAGCAGTCGTAACTGCAGCACCACCACCAGCAGCAGCACCA
CCACCACCATCACCACTAGGAGGAGAAGAGGTTGTAGCTGCAACACTCGC
CTCCGGCTTCGGTAGCGTTGTTGTAGGCGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGCGGAATGTACGGGAGCTGTTATCCTTATAACGTGTCAATG
TATTCGAACGTTGCTGGTGGCGGGGAGGGTAGAGGAGGAGTAGGAGATGA
AGGAAGAGGAGGAGGAGGAGGGAGGCTTGAAGGGAAAGGAGAGGGAGAAA
TGGGGCTAGGAGGAAGGGTGCGGATGGAGAGGGGGGGGACGTGCGGAGAG
TGCAAGCTGAGTAAGgtatgtatgtattcgtatacttatgggtgtattca
tttgatattcgatgtgagggagggaggaaggaagtggcgaaggagggata
gattgtcctgtggagagggacgaggaagcaaaggaggaggaggaggacga
ggaagaggaggaggaggagggaagtacggcaggaaggagggaagaggttg
gcggagattttaagctgacttcacgttcaggagtatgttccgctattccc
tttctcctcgttgacttacaccttccctactttcctcctttcctcgcctc
tctccctcccctccctccctccttccctccctccttccctctctcccttc
cttccccttcctccctccccctggtgcagGTAAAGTGCGACAGAGCCCAA
CCTGTCTGCGGTCGGTGCAAGCGGCGGAATCTTGTATGCGTGCCCCAGAT
GCGAGGGCCAGGGCGGCCGGTGGGATCCTATGCTAGATCCGCCCCTGGCA
Ggtgagggagggagggaggggggggggggagagggagggagggagggagg
gaggaaaggagggggagagatttatccgtaataaatggtgtttcttggaa
gtgttagaaaggcactcagaaggggaagagaaggagaggcaggaacatga
gacattctgactacagcggtatatatttacacaatccattcctccctcct
ttcctccctcctttcctccccccctcccccctccctccctccccccttcc
ctccttgccaccctagTCGCGACCCCGACGATCTCAAGCAGCAACAACAG
CAGCAGATGTACCTCCAGGACCAGGAGTACTACCAACAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTACCATTACAAC
CATAATCACCATCACCAGCAGCAGCAGCAACACAACCACACAGGATCTTT
GGAACGACCGTACCCGGACCAACCACCCCCCGGCCCCTCCCTCTCGTCCT
CCTTCGGCCCTCCCTTCTTCCCTCCCCCTCCTCCTCCCTACGCGCGATCC
ACCTACCCTGGCAATTACCAACACTACCAACCACAGCAACAGCAGCAACA
ACAGTACCATCAGTATCAACTGCAGCAACACCATTATCCGCAGCAGCAGT
ATCAGCAGCACCAGCAACAGCAACAGCAACAGCCGCAGCAGCAGGCGATG
TCTgtcgctgcctcccctttcctaccccccccccccctcctctctgtcct
ccctcccttcctcctccctcttcaagAACACCCCGGCATTTTCGGACTTT
ATCCATCCAGTGGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCG
GCGGGGGGGGGAAGCTCCTCCCCACCCCGAGAGCAACATAGATgtacgtc
cctccttccctccctccctccttccctccctccctttctcccttcttcca
atcccaagcccacctcatcaccctctgtaccattcccaccttccctccct
ccctccctccctccctccctcttcctttctcagATGGAGACCCATATCCG
CGCCGCCTCTTCCCTCGAAAAGCTTGCCCGCGGACATCTCCCTCCCTCCC
TCCCTCACTCCCTTCCTCATTCCAATCCCAACACCACTATCGCCACCTTC
TCCTCCTCTTTCTCCGTCTCCTCCTCCACCAATCCTGCCCTCACCAACGG
CAGCACCAACGGCAGCAGCAACGGTCTCAGCAACGGTTTCAGCAACGGTT
TCAGCCACCTTCCACCTCCCACCCGCGACAACAACAGCAGCAGCAGGTCT
TCCTTCTTCCCCTCTTCCTTTCCCCCTCCCTCCTCCCCTCCCTCCTCCCC
TCCCCCCTTTCAAGCGACCTACAGCCAGCATAATGCTCCTCCGCCACCTC
CTCCTCTTCCTCCTTCTTCTTCCCTTCCTTCGATTCCCTCCCCTCCTCCC
TCTTCCTCCTCCTCCCACCAACTCGCCACAGCAGCAACAACAGCAACAGC
AGCCGCAACAGCAGCCGCAACGGTGCCAACAAAGTTTGAAGAGGAAGGAG
GAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
AACGGAGGAAGGCTCTTGTCACGTGTGGCGGCATTCCTACACTCCAACAC
TATCGACGAGCAAAGGGCCCGTGCTACCTTgtaagccccccccccccctc
cctccctccctctctccccccctccctccttctctcccgccctccctctt
tcctgcctgttccctccacctcccctgctccatcttgtgtgtggtgcacc
atttccctcatcattctcccttcccgccctccctatctttatccctccct
ccccctccagGCTCTCCTGGCATGGTTGGAATAGGCATCATGATGACCGT
GATTGCACGGAGGATATACTTGCCCCTCTCGCAGCCCTGATGGGTGTCTC
CCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTGCTG
CGAAGGGCCCCGGGAAAAAGGAGGAGGAGGAGAAGGGAGGGAAAGAGGGG
AAGGTGGAGGCGGAGAAGGAGAAGAGGGGGGATTTGAAAAAGGTGCTTGA
AGCAGCAGTAGCAGTAGCAACAGCACAGAAAGAGGAAAATGAGAAGGAGG
AGAAGGAGGAGGGAGGAAGGGTGGGAGGGAGGGAAGGAGGGGCGAGGAAA
CGTTGGAAGGTCTCTCCAGCCTCTCTGAATGCCGCCTTGGCGTCTGCTGC
CGCCCTACAGAGGGAGGGAGGGATGGAGGCGGAGGGAGGGAAGGAGGGAG
GGAAGAAGGAGGGGGTCATGCCCCTTCTGACGAAGGAGGAGTTGGACGTG
CTTTCTTTTTTGCGCGTGGGAAAGgtacgtgtactccctccctccttccc
tccctccctccttccctccctcccccctccctccctccctccttcctccc
gtccacctttcacttgtccttgccatccttcactccttgcctccctcttc
ccccctctatcctctccctctcatctcttaccaccctttcctcctgctct
cccttccaagGATTTGACGACTGCAGGCGCTGCCTGCTGTTCTGTCGCCT
GGTGCAACGGAACGCCCGTTGAGCGACACGTTAACGAACGTTTCCACGCC
ATGTTCATGCCCAGgtaggtagggagggagggagggacggaaggcagtca
cgtaaagtgattagagtagaagcgtttcaccgtgctcatgccaaggtcga
aagggagggaaggaaggagggagggagggagggagagaaggagggacgga
gggaggggggtcgccttctgtcctacactgcttccaagtcctcccttcct
cgccccttccctccctctccctctgcccctccctctcctccccggtgagc
cgagtgcatggcacccacaacccacacccctctttccctccctccctccc
tcccctccccccctcagATCGACCTTCCTGGCCTCCTCCCTCCTCCCCTT
CCTCCTCTGGGCCGAGTTCATCGCACCGGAGGCACGAGAAATATTCTTTG
ACTCACTCCTGGCCTTGTCCTTGACGAAGGCGGCAGCGGCGGCGGTGGAA
ACCAAGATGTATCTACCGgtacgtgaggagggagggagggagggagggag
ggagggaggtagggagggagggagggaagaaaggatgacaacgggaactt
cttgccaattaccaaccttccctccctctctccctctttccctccctcag
GTCCTCGACAGGTGGGGATTAAAGCTACCGGCTACGGTGCATCTACGTGT
CTTTTTGTCCGGTGATGGCGAGTTAAGTGCCGCCATGCTCTTGATCGAGC
CCCGCTCCTACGGGTAGTGAAGGTGAAATGGATTCAAAGGGGTGTGCTGC
ATGTACCTTTTACATGTTTCAGGCCTTCAAAGCGAACTTCAAAGCGAAGC
GTTTCAAACCGTTTCAAATTGATTCCAACCGTTTGATTCATTCGCACCGG
ACTCCTTCGATCGAGGGAATGATTCAACAAGTGAGTCTATAAATCAATAA
ACCGTAAATTGATAAATTCACCTTAATTAAAATATAACAAGGGGTGTGTT
TGACTCTCCCAAAAATCCTTCACTAGACTATTTGAGGAGTTTAGGCCCTT
AAATAGCGAAGTCGAGCTGTCTAGGGGTAGGGCAGCGTCTCAAGTGCTAC
AAGTAGGAGTTAAGGGCTCCTCCTTCCCAGGCTCTTACAAAGCAACACTG
CCTTAAATAGGGGAAATGACCATTTTGGTAGTACAAGCTTCCTTTACATG
CCTGCCTCGCCACCGATCACATAAGAACAAAACATATGGACCGTATGTGG
TCTTGTGGCTGTGTGAGGACACAAAATTGACGAAAGTAGTTACACAGAAA
GCATTATCCGCCTTGTTCACATTACCCCGTTCATGTCCTTGCGCCCACGG
GGGCCACTAGGCAGGCACCCCAAAAAATAATGCTGCTGTCGGTACATGTG
GATGGCAAGAAGCACATGTACACATGTTGACAATGGACTCCTGGGTCGCG
TTAATGGTGTGTGTTTTGCTATTTGAGGGCTCCTTTCGCTATTTGAGGAT
GCCTTTGCTATTTGATGGTTATCCTCCCGGTCGAATACACTCCTGGGCCA
GATCTTAAATAGAAATCTTAGGTAAATATGTAAGGGTAGCTGCTGGTTAC
GGTTGCGGAGTTGAGCAGCCCCTTTAATTAACAATAAATATATAGAGAAT
TAAACCATTAATGGATCATCCATTTTTTGGGAAAGTCAATAATAAATAAA
TAGGAGGTCAATAACAATTGCCTTCCAAATATTACCATGTATGCGAGAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGGAGAG
AGAGAGGAGAGAGAGGGATGAAATGAGAGAGACGGCCTTTCCTGGCCACG
AATATGAAGGTCACAAAGAAGTAGAAGACGAAGAGTGGAGAGAGAAAAGA
AATGGAGAGATTAATTGTTGGAGGAGGAGGAGGAGGAGAAACGTGGGGAC
GGTTTCTCGGAGATTGGGAAATTGGACGAAAATTCGATATTTGAAGGGAC
AAATCGATACCCGGAGAAATCACCAATTATAGTCTCCACGAG
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protein sequence of NO11G00440.2

>NO11G00440.2-protein ID=NO11G00440.2-protein|Name=NO11G00440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=908bp
MSLPKRRGSDEGRCSKSQPSNVRDGDLGTDEKRRRKEAVVTAAPPPAAAP
PPPSPLGGEEVVAATLASGFGSVVVGGGGGGGGGGGGGMYGSCYPYNVSM
YSNVAGGGEGRGGVGDEGRGGGGGRLEGKGEGEMGLGGRVRMERGGTCGE
CKLSKVKCDRAQPVCGRCKRRNLVCVPQMRGPGRPVGSYARSAPGSRDPD
DLKQQQQQQMYLQDQEYYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQYHYNHNHHHQQQQQHNHTGSLERPYPDQPPPGPSLSSSFGPPFFPPP
PPPYARSTYPGNYQHYQPQQQQQQQYHQYQLQQHHYPQQQYQQHQQQQQQ
QPQQQAMSNTPAFSDFIHPVERGGGGGGGGGGRRGGEAPPHPESNIDMET
HIRAASSLEKLARGHLPPSLPHSLPHSNPNTTIATFSSSFSVSSSTNPAL
TNGSTNGSSNGLSNGFSNGFSHLPPPTRDNNSSSRSSFFPSSFPPPSSPP
SSPPPFQATYSQHNAPPPPPPLPPSSSLPSIPSPPPSSSSSHQLATAATT
ATAAATAAATVPTKFEEEGGGGGRGGGGGGGGGGGGNGGRLLSRVAAFLH
SNTIDEQRARATLLSWHGWNRHHDDRDCTEDILAPLAALMGVSLPPSLPP
SLPSSLPPAAKGPGKKEEEEKGGKEGKVEAEKEKRGDLKKVLEAAVAVAT
AQKEENEKEEKEEGGRVGGREGGARKRWKVSPASLNAALASAAALQREGG
MEAEGGKEGGKKEGVMPLLTKEELDVLSFLRVGKDLTTAGAACCSVAWCN
GTPVERHVNERFHAMFMPRSTFLASSLLPFLLWAEFIAPEAREIFFDSLL
ALSLTKAAAAAVETKMYLPVLDRWGLKLPATVHLRVFLSGDGELSAAMLL
IEPRSYG*
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protein sequence of NO11G00440.1

>NO11G00440.1-protein ID=NO11G00440.1-protein|Name=NO11G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=908bp
MSLPKRRGSDEGRCSKSQPSNVRDGDLGTDEKRRRKEAVVTAAPPPAAAP
PPPSPLGGEEVVAATLASGFGSVVVGGGGGGGGGGGGGMYGSCYPYNVSM
YSNVAGGGEGRGGVGDEGRGGGGGRLEGKGEGEMGLGGRVRMERGGTCGE
CKLSKVKCDRAQPVCGRCKRRNLVCVPQMRGPGRPVGSYARSAPGSRDPD
DLKQQQQQQMYLQDQEYYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQYHYNHNHHHQQQQQHNHTGSLERPYPDQPPPGPSLSSSFGPPFFPPP
PPPYARSTYPGNYQHYQPQQQQQQQYHQYQLQQHHYPQQQYQQHQQQQQQ
QPQQQAMSNTPAFSDFIHPVERGGGGGGGGGGRRGGEAPPHPESNIDMET
HIRAASSLEKLARGHLPPSLPHSLPHSNPNTTIATFSSSFSVSSSTNPAL
TNGSTNGSSNGLSNGFSNGFSHLPPPTRDNNSSSRSSFFPSSFPPPSSPP
SSPPPFQATYSQHNAPPPPPPLPPSSSLPSIPSPPPSSSSSHQLATAATT
ATAAATAAATVPTKFEEEGGGGGRGGGGGGGGGGGGNGGRLLSRVAAFLH
SNTIDEQRARATLLSWHGWNRHHDDRDCTEDILAPLAALMGVSLPPSLPP
SLPSSLPPAAKGPGKKEEEEKGGKEGKVEAEKEKRGDLKKVLEAAVAVAT
AQKEENEKEEKEEGGRVGGREGGARKRWKVSPASLNAALASAAALQREGG
MEAEGGKEGGKKEGVMPLLTKEELDVLSFLRVGKDLTTAGAACCSVAWCN
GTPVERHVNERFHAMFMPRSTFLASSLLPFLLWAEFIAPEAREIFFDSLL
ALSLTKAAAAAVETKMYLPVLDRWGLKLPATVHLRVFLSGDGELSAAMLL
IEPRSYG*
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Synonyms
Publications