NO11G00420, NO11G00420 (gene) Nannochloropsis oceanica

Overview
NameNO11G00420
Unique NameNO11G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4181
Alignment locationchr11:181234..185414 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:181234..185414 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007477NSK007477Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00420.1NO11G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00420.1NO11G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00420 ID=NO11G00420|Name=NO11G00420|organism=Nannochloropsis oceanica|type=gene|length=4181bp
ATGCCGCCGTTGTCGACAGGGCCCCAGCCACCCGCAAAATCGGGTGGCCT
TCTGAAGgtaggtacgtgcccaatcctcccacatgctaatgccatattaa
gatgcacgccgtgccacatgcagcgcatatgccttggaaaaattcaacct
gtagatgctcttgatcatgtgtcactctctttcttcctctcctcccttta
aggcaaaggcaaacactctctcttcactgattctgaatccgcctccctct
ccctccctccctcccttccctcgtctcagGAACTGTCCTCGCTTTTCGAG
CGAGGAAAATACAGCCTCTTCTTCCAACACCTCAGCCATCATTCTGTCCA
TGATCGCTCCGCCCTCCAAGCCATTCTCGAGTCCTCCTCCTCCTCCTTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCTCCCCTCCCTCCCT
CTTCTCCTCGCCCGCGCCCTCCACCACTCCCTCCCTTTCCTGGACCCCGC
CCTTGATCAGACACTCTCCTCCTTTTTTAACATCTCCACCTCCTTCTTCA
CTGATGATGATTACCACCTCCTCTGCCTCGTCGGCCTCTCCTCCTCCCTC
TCCCTTCCTCCCTCCCTCTCCCTCCCCCTTGCCCTCCTCGATATGGTCGT
CTCTCCGTCTTCTTCGTTTCGTCTGCGGCGTTACGCCTTTCATTTCTTCT
TTTCCTTCCTCCAGCACCCTACCATCCTTCCCGCCCTCATCCTCACCACC
ATGCCTGAAGAAGACGAGAAAGAGGACGAGGACGAGGAAGGGAAGGAGGG
AAGGCAGGTGAAAAAGGGAGGGCGGGGCCGCCCCCCCAAGAGAAAGAAGG
TGGAAGAGGGCGAGGGGGAGAGAGGGAAGGAAGAAGGGCGGAAGTTTCTA
CACAAAATGCACGCATTGTTTCGCGGAATATTTTCTGAGCAACTGGCAAC
GATTGAGCTTCAGGAGGGAGTGATGGAAAGTGCCTGGAGGTGGATGAGGG
GGGTAGAAAAGGAGGAGAGGAGGAGGGGAAAGAGGAAGATGAAGGAGAGA
AACAAAGAGGGAGGGAGTGTGTATTTGTTGGAGGAGGTGTTACCGGTGGA
GGTGCGGGCGATGATCGAGGAGGAGAAGGCATACAGGCCTTTCCTGAGGC
GTTTGCCCACATGCCTGCAGGAGGGGAATGCGAGGCGGAGGAGGGAGAGG
GAGGGAGGGAGGGAGGGCATGGTTTTGGCGGTGGTCCCTAAAAGGgtgcg
ggtgacgagcgaggagggagggagggagggagggagggagggagggaggc
agggaggcagcccttgctggtgcagagggggccagtctattttgggtcgg
aagaggccagattcactttcctccctccctccctccctcttttacagAAA
GAGAGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACAGACAT
CTTCTTGGCCTTTAAGAAGTTGCGTGAGGTAGCCTTCCTCCCTCCCTCCC
TCCCTTCCTCCCTCCCTCCCTCCCTTCGATTTTACCTGGACGACCCGCTC
GTCCAGGCTGCTTTGCTAGGACCTCTTCCTCCCTCCCGCCCTGCCTCCCT
CCCTCTCCCTTCCTGTTCCGTCTCTGTGGCATCTTTTGTCTCCTCCACCA
TCACCGCGGCCGGAAGAGAGGGAGGCCGGGAGGGAGGGAGGGCGGGCGGG
AGGGTGTATTTCGAGGTGGTATTCGCGTCGGAGGAGGAGATGAAGGAAGT
GAGAGCCTTCATGGAGGGCAGGTTGGGAAAACACCAATGGCAGGAGGGAG
GGAGGGAGGGAGGGGCGAAGGAGAAGCCGCAGAGCAATGGATGTACCGTG
GAAGGAAGGGAGGGAGGGTGGAAGCGAGAGAGGGAGGAAGACAATAAGGA
GGAAGAAGAGGGAAAGAAGGAAGACAAAAAGCAAAAGAAGATGAATGAAG
TGGAGGGAGGGAGGGAGGATAGGAGGGAGGGAGGGCAGTGGTCACCGGAA
CCGAAGAAAACAATGAAGGCGTCGGTGGCCTCGACGAGGACAATGCTGGC
CTTTCTGACGGGAGGAGGACGCGGAGGAAGTAGGGAGGGAGGGAGGGAAG
GGGGGAGGGAGGGAGGGAGAGAGGGAGGGAGAGAAGGAAGGGTGAAGGCC
TTGTCGGTTCGGGTGCTGATGGAAGAGGAGACGGAGGTGGAGGAGGAGGA
AAAGGAGAGAGGGAGGAAAGGGGGGAGGAAGGAAGTGAGGGAGGAAGGGA
GGGAGGAAGGGAGGGAGGAAGTGAGTATGAAGCAGAAGCTTCGACCGATT
CGGCCTCTCTTCAAAGGCCGAAGGATGCCGCTGGGGAAGAGAGGGGGGGA
AGGAGGGGTGGGAGAGGACGAGGGGAGGGAGGAAGAAGGGCAGGCGAAAG
AAATGTGGGACGCGTCACCCCCGCCGTTGATGCTGGAGGAGGAGGAGGAT
GAGGAGGAGGAGGAGGAGGAGGAGGAAGATAGGAAAAAGCCGAAGGATAC
AATTAGTCTGCTGGCGAGAGAGGCGTTGGATGAGTTTAGGGAAGGGAGGG
AGGGAAGGGAGAAAGGAAGGGGGAAGATAGGGATGAGGAAGACAAAGATG
AAGGAAGAGGGGAAGGAGGGAGGGAGGGAGGGAGGAAGGAAGAGGGGGGA
AACGTCGAACAGTCGGCCAGGACGATTGGAATTCGAGATTGTCCGTCGTC
CGCTCTCTTCATCAGGGGGTGTTGGAAGAAAGGTAAGGAAGGAAGGAGGG
AAGGAAGGAGGGAAGAAAGGAGGGAGGGAAGGGATGAAGCAGGCAATAAA
GACGGTTAGGGTTATTGGAACGGAAGGAGGCGGAGGCGGGGTAGGGGTAG
AGGGAGGGGGAGGAGGGGGAGGCAGGAGCTGCAGTAAAGAGAAAGCGGGA
AAATGTATCTTTCCTCGTCCCCTGGCGAGGCTATCTGCAGCTGCTGATGC
TGAGAAGAAGCACGGCGTGTTCCACCGTCATTCCCGCCCTGGGGTCCCAC
CCCCCGGCTCTCTTATCTCACAGATTTCGAGCATTACTATGCCCTCCCTG
TTGGAGGTAGATATGGAAGGGGGAAGGGAGGGGGGGAGGGAAGGAGGGCG
GGGGGATGCGATAGTAAAGCACTTGCAGCGGGAGAGGGCGGAGGTGGCAG
CGGCGGCGGCTGCGAAGAGGAAGGAGCAAGAGGAGGAGAAGAGGAGGCAA
AAAAAGAGGGAGAAAGAAAGGGAGATTGAAGAGGAAAAGCGACGGCAGCA
CCAGGAGGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTACGACAAACATCTCTCTCATCATCATCATCAGCAGCAGCAGCA
GCAGGCGGGATGAATATGGCGATGCAGGACGAGGAGGAAAAAGAACATGT
GACGGAGGCTCTGCGGCAAGAACAGCAATTAGTGGCCAAAAGGGGGGTCG
CAGCAGCAGCAGGAGCAGGATCACGAGCAGGAGCAGCAGGAGCAGGAACA
AGAGCAGGAACAGCAGGAGCAGGATCAAGAGCAGCACGTCGGCGTAGCAC
CGGCAGCGCCACAACCATTAAGAAACCCTCAGGCAAGAAGCGTAAGTATG
AGGAAGAGGAGAAGGGAGGGAAGCAGCATCCACCACAGCAGTTGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAAGAAGAAAGTGATGGAGAA
TGAGAAGCGAAGGGCAATGCTCCTCCTCCTCCACGCGGGGGCAGAAGCCC
GACTGACGGCCCATTTCACGGCCGTTGAGAACGCCATGGTGGGCTTGAGG
GAGGCGCAGCGATCGTGGAGGAAGGAAGGGGAAGCGGCACTGGCGTGCCT
TGTGCGGTTTCAGCAGGAAGTGCACGAGGAGGAGGCGGAGGAAGAGGAGG
AAGGGGGGGATAACGAGGGGAAGGAGGGAGGGAAGGAGAGGGAGAATGAG
GGGCAGgtgcgtgaggggagggagggagggaggaagaaggcaacgaagga
gggacgtgggataggaaagtaagcagaggagaagaaggaaatggagcagc
gacagtagcaccggcagcgaaaagagaagaaccgtgtaccccaaaaacac
caccagCAGCAGAAGCAGCATCAGCAAAAATGTGACCGTGACGGCGCGAA
GGCATTGGGTGAGCTGAAGAGCCCCTTGTGA
back to top

protein sequence of NO11G00420.1

>NO11G00420.1-protein ID=NO11G00420.1-protein|Name=NO11G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1219bp
MPPLSTGPQPPAKSGGLLKELSSLFERGKYSLFFQHLSHHSVHDRSALQA
ILESSSSSFSSSSSSSSSSSFLPSLPLLLARALHHSLPFLDPALDQTLSS
FFNISTSFFTDDDYHLLCLVGLSSSLSLPPSLSLPLALLDMVVSPSSSFR
LRRYAFHFFFSFLQHPTILPALILTTMPEEDEKEDEDEEGKEGRQVKKGG
RGRPPKRKKVEEGEGERGKEEGRKFLHKMHALFRGIFSEQLATIELQEGV
MESAWRWMRGVEKEERRRGKRKMKERNKEGGSVYLLEEVLPVEVRAMIEE
EKAYRPFLRRLPTCLQEGNARRRREREGGREGMVLAVVPKRKEREEEEEE
EEEEEETDIFLAFKKLREVAFLPPSLPSSLPPSLRFYLDDPLVQAALLGP
LPPSRPASLPLPSCSVSVASFVSSTITAAGREGGREGGRAGGRVYFEVVF
ASEEEMKEVRAFMEGRLGKHQWQEGGREGGAKEKPQSNGCTVEGREGGWK
REREEDNKEEEEGKKEDKKQKKMNEVEGGREDRREGGQWSPEPKKTMKAS
VASTRTMLAFLTGGGRGGSREGGREGGREGGREGGREGRVKALSVRVLME
EETEVEEEEKERGRKGGRKEVREEGREEGREEVSMKQKLRPIRPLFKGRR
MPLGKRGGEGGVGEDEGREEEGQAKEMWDASPPPLMLEEEEDEEEEEEEE
EDRKKPKDTISLLAREALDEFREGREGREKGRGKIGMRKTKMKEEGKEGG
REGGRKRGETSNSRPGRLEFEIVRRPLSSSGGVGRKVRKEGGKEGGKKGG
REGMKQAIKTVRVIGTEGGGGGVGVEGGGGGGGRSCSKEKAGKCIFPRPL
ARLSAAADAEKKHGVFHRHSRPGVPPPGSLISQISSITMPSLLEVDMEGG
REGGREGGRGDAIVKHLQRERAEVAAAAAAKRKEQEEEKRRQKKREKERE
IEEEKRRQHQEEEAAAAAAAAAAAAAAVRQTSLSSSSSAAAAAGGMNMAM
QDEEEKEHVTEALRQEQQLVAKRGVAAAAGAGSRAGAAGAGTRAGTAGAG
SRAARRRSTGSATTIKKPSGKKRKYEEEEKGGKQHPPQQLQQQQQQQQQQ
QQKKKVMENEKRRAMLLLLHAGAEARLTAHFTAVENAMVGLREAQRSWRK
EGEAALACLVRFQQEVHEEEAEEEEEGGDNEGKEGGKERENEGQQQKQHQ
QKCDRDGAKALGELKSPL*
back to top
Synonyms
Publications