NO11G00240, NO11G00240 (gene) Nannochloropsis oceanica

Overview
NameNO11G00240
Unique NameNO11G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3053
Alignment locationchr11:100445..103497 +

Link to JBrowse

Properties
Property NameValue
DescriptionTrypsin Inhibitor-like, cysteine rich domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:100445..103497 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036084Ser_inhib-like_sf
Homology
[Close]
BLAST of NO11G00240 vs. NCBI_GenBank
Match: EWM25201.1 (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 1.800e-41
Identity = 116/272 (42.65%), Postives = 150/272 (55.15%), Query Frame = 0 
Query:    1 MRPAAEAPSCRPLHHALLFILAIIGLAQCVSFVNAVAPNGPLHTVGLNEEEHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKEREVLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTPAGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAIEVALAGFDPITDRLTPLEDEEKGKKEGGKPPFSIPRFPPLGRSGXXXXXXXXXXXXXXXNEVLGTVTGGLWP 273
            +R A++A S  P    L+F+  ++     VS   A+  +   +T     EE D   S S H +LR   DH     ADL GTK +    N        ERE+ VPPAA+E T     P CPKNA ++FCA++PKCA TC+ H   S+     GVVKMCN+MCYQRC+CLPDFYLL+GFC+ E+ CLSI +A + +KKRQA+E AL GFDP  DR+ P +D     +E G                            XXX++VLG VTGGLWP
Sbjct:    2 LRYASKARSL-PASLLLVFLFGLL-TTFFVSCATAIETSTTAYT-----EELDARTSSS-HSNLRPRTDHPFDRLADLEGTKGS---LNGKIRPKSSEREIFVPPAAEEETL-NPLPRCPKNAHYSFCAIEPKCAATCAEH-RDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQAVEEALKGFDPKMDRIFPRDD---SLEERGGXXXXXXXXXXXXXXXFPFGTGSEDGILXXXSDVLGAVTGGLWP 257
[Close]
BLAST of NO11G00240 vs. NCBI_GenBank
Match: XP_005855530.1 (hypothetical protein NGA_0618700 [Nannochloropsis gaditana CCMP526] >EKU20824.1 hypothetical protein NGA_0618700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 149.8 bits (377), Expect = 1.500e-32
Identity = 90/201 (44.78%), Postives = 119/201 (59.20%), Query Frame = 0 
Query:    1 MRPAAEAPSCRPLHHALLFILAIIGLAQCVSFVNAVAPNGPLHTVGLNEEEHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKEREVLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTPAGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAIE 202
            +R A++A S  P    L+F+  ++     VS   A+  +   +T     EE D   S S H +LR   DHT    ADL GTK +    N        ER++ VPPAA+E T     P CPKNA ++FCA++PKCA TC+ H   S+     GVVKMCN+MCYQRC+CLPDFYLL+GFC+ E+ CLSI +A + +KKRQ  E
Sbjct:    2 LRYASKARSL-PASLLLVFLFGLL-TTFFVSCATAIETSTTAYT-----EELDARTSSS-HSNLRPRTDHTFDRLADLEGTKGS---LNGKIRPKSSERDIFVPPAAEEETL-NPLPRCPKNAHYSFCAIEPKCAATCAEH-RDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVRE 189
[Close]
BLAST of NO11G00240 vs. NCBI_GenBank
Match: EWM25202.1 (Trypsin Inhibitor-like, cysteine rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 3.300e-32
Identity = 90/201 (44.78%), Postives = 118/201 (58.71%), Query Frame = 0 
Query:    1 MRPAAEAPSCRPLHHALLFILAIIGLAQCVSFVNAVAPNGPLHTVGLNEEEHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKEREVLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTPAGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAIE 202
            +R A++A S  P    L+F+  ++     VS   A+  +   +T     EE D   S S H +LR   DH     ADL GTK +    N        ERE+ VPPAA+E T     P CPKNA ++FCA++PKCA TC+ H   S+     GVVKMCN+MCYQRC+CLPDFYLL+GFC+ E+ CLSI +A + +KKRQ  E
Sbjct:    2 LRYASKARSL-PASLLLVFLFGLL-TTFFVSCATAIETSTTAYT-----EELDARTSSS-HSNLRPRTDHPFDRLADLEGTKGS---LNGKIRPKSSEREIFVPPAAEEETL-NPLPRCPKNAHYSFCAIEPKCAATCAEH-RDSQEKEATGVVKMCNRMCYQRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQVRE 189
The following BLAST results are available for this feature:
BLAST of NO11G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25201.11.800e-4142.65Trypsin Inhibitor-like, cysteine rich domain prote... [more]
XP_005855530.11.500e-3244.78hypothetical protein NGA_0618700 [Nannochloropsis ... [more]
EWM25202.13.300e-3244.78Trypsin Inhibitor-like, cysteine rich domain prote... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00240.1NO11G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609781gene_10252Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100722g4gene5299Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00240.1NO11G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00240 ID=NO11G00240|Name=NO11G00240|organism=Nannochloropsis oceanica|type=gene|length=3053bp
ATAGGAGACGCAAGTAAGACATAACAAAAAGGCCTGCAGAATGAGACCCG
CGGCTGAAGCCCCGTCTTGCCGGCCCCTGCACCACGCCCTCCTGTTCATC
CTCGCTATTATTGGTCTTGCACAATGTGTCTCTTTCGTCAACGCTGTTGC
TCCTAATGgtacgtctgatctctccctctttttcctacccctcgattgtt
ccacctcatcctgccgtgctttccgacagGACCCCTCCACACTGTCGGCC
TGAACGAGGAAGAGCACGACACCCTCGCATCCGGATCCCTCCATCCTCAT
TTACGCCGTGCCCGGGACCACACCTCTGGCAGTTGTGCAGACCTCCATGG
gtaggtgctgggtcttggaggaagggcgggatggatggatgggtgagagg
gtgggagggagggtaggagggagggtcatcggagtatcttcttaactagt
atgggacaccataaatttcgtatctcatccccatcctccctcctttattt
cattaccagTACCAAAGAAAACACCGAAGAGTTCAATTTCTTCCAGTTCA
TGGACGGAAAAGAGCGAGAGGTCCTCGTTCCTCCGGCGGCACAAGAAACG
ACGCGTGGCACCACTACTCCCGTCTGCCCCAAGAACGCCCGTTTCGCTTT
TTGTGCCGTTGATCCGgtatgtaggaagtgagggaaagggagcggggagg
ggtggcaagggaggaagggaggaagggaggataaaagggaggtgcaagtg
aactgaaagcaaaaagaagacaagcgtctgacctccccccctctctcatc
cttctctccctacctcccctaacccctccttccttcctttgctagAAATG
TGCACTTACCTGCTCTAATCACATAGAGCACTCCAAAGGGGGGACACCGG
CAGGTGTGGTAAAAATGTGCAACAAAATGTGCTATCAGCGCTGTGAGTGT
CTACCTGATTTTTATCTGCTCGAGgtagggagggagggaaggagggaggg
agggaggaagggagggagggaggaagtgaaggagggaatcgagagtggag
acatgctatattttctcataattacggtgcctgtcaaataaccatcgaag
tgacggcggaatcatcatgcgatctacacaacggcctaatgattaccctc
ctcctcttttcccttcctccctcctcctccctccctccttccctccctcc
cttcttccctcctcccctccttccctccctcctcctctcacagGGCTTCT
GCGTCCCGGAAGATGATTGTCTCAGCATTAAGGAAGCCACGTCACCAGCC
AAGAAACGGCAGgtcagaaacagaggaacagagggagggaggagcgaagg
aaggaaggaaggaaggaaggaagcgagggagggagggagggaggaagggg
ttggtggtgggaacacatgaaaaggagagcatgtagatatccatccagct
gactgcagtctctacgtctccctccatctctccttttctcctttttcttc
cgtttctcctttttcttccgtttcttctttttcttcttcttcttcttctt
cttcttcttcttcttcttactttcttttcttccgtggcactgaaactccc
catttccctcctcctcttttcctccctcttgtcccccttcagGCCATCGA
AGTGGCGTTGGCGGGCTTCGACCCCATCACGGACCGTCTCACTCCCCTTG
AGGACGAGGAGAAAGGGAAGAAGGAGGGAGGAAAGCCTCCCTTTTCCATT
CCTCGTTTTCCCCCTTTGGGGCGCTCCGGGGGCGGCGGTACCGAAGAGGG
AGGAGATGACATCATCGATGATGTGAATGAAGTTTTGGGCACCGTCACAG
GAGGGCTTTGGCCGGGTGGGGAGCAGgtaaggaggaaaaggaagggagag
agggaagggagggagggaaagaggaagggagggaggcagggaggccaatt
tctgagtacctacggtctcgctcttccccgtgtacagGGAAAGGACAAGC
GTCGTAAAGAGGAAGGGGAGGAAGACGAAGAAGAAGAGGAAGAGGAGGAG
GAAAACGAGGGAAGGCTGGGCGGCTCTATCCACGTGGGTCGCACTACGGT
ATCAGgtacttgctgacatggacgacctagatttctttcttctctccctt
ccttcctctctccctctgtcatttcctccccattttctcaaaaatattga
tatttatcgtttctaccatctatgaaacacttacgtttccccccccttct
tcatccctccacttccagTGAATATTGCCGCCAATGAAGGACTGGAGTTT
GTGGAGGATGAACAGGCATTGGGAGAGGCAGGGAGATAAATGTCTGGCGA
AAGAGAAGAAGGGGGAAAGTATGAACACGTTGTCTATAGGCGTTGCTGTA
CCTAAATTTAAAGAAGTGCATGAACCTATCCATTGGGGGTCTGTCATGCT
CGCTCTAATTTTGCTGCCGAGTGTCGAAGGAAAACAAACGTTTTCCGTCC
CAAGCCTGAAGTTGGCCACAGAAGAACCTTTCCATATTGTGGTATTAATG
CCAATTTCTCCCGATTCCTACACATTGTGGTTTCTAAACGTCCCCCCCTC
CCTCCTGATACCCCGTCCACGTTCGGTCACGTCATCATTCAGACGATAGT
TCATTGTCACCTTTCCGATGTTCATCGACACACACTTTATTTGTTTGTCT
ACATCAAGGCTGAAGTCTTTCCATACGCTATACGCGGAAAGGAAGTGTGC
GCTTGAGGGGGGGCCACCATTAATGAGCCTCATTTTTCTCAGACACTCTC
TCCCTTCCCAAGCATCCCATGAAAATCGTCCCTCTACTCCCACTTGCACG
GCTTTCCTCCCATTCAATCATTCTAAACATATATACGTATCTTGTGGTCC
TTTTCCCAACCTTTTCGTGCATCAAAAAGGACAAAAGCCACTGAATCGAA
AGAGCTCTTTATGTTCGTGAACCATGTCAACATATCTCCCATGCAACATT
TGACACCCCTCGAACAATCACTCCATTCAGTCGACATTTTCACACAAAAA
AAC
back to top

protein sequence of NO11G00240.1

>NO11G00240.1-protein ID=NO11G00240.1-protein|Name=NO11G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MRPAAEAPSCRPLHHALLFILAIIGLAQCVSFVNAVAPNGPLHTVGLNEE
EHDTLASGSLHPHLRRARDHTSGSCADLHGTKENTEEFNFFQFMDGKERE
VLVPPAAQETTRGTTTPVCPKNARFAFCAVDPKCALTCSNHIEHSKGGTP
AGVVKMCNKMCYQRCECLPDFYLLEGFCVPEDDCLSIKEATSPAKKRQAI
EVALAGFDPITDRLTPLEDEEKGKKEGGKPPFSIPRFPPLGRSGGGGTEE
GGDDIIDDVNEVLGTVTGGLWPGGEQGKDKRRKEEGEEDEEEEEEEEENE
GRLGGSIHVGRTTVSVNIAANEGLEFVEDEQALGEAGR*
back to top
Synonyms
Publications