NO11G00180, NO11G00180 (gene) Nannochloropsis oceanica

Overview
NameNO11G00180
Unique NameNO11G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr11:77358..78974 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:77358..78974 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G00180 vs. NCBI_GenBank
Match: XP_005855533.1 (hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526] >EKU20827.1 hypothetical protein NGA_0619000 [Nannochloropsis gaditana CCMP526] >EWM25204.1 hypothetical protein Naga_100311g4 [Nannochloropsis gaditana] >EWM25205.1 hypothetical protein Naga_100311g4 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 5.300e-58
Identity = 112/224 (50.00%), Postives = 149/224 (66.52%), Query Frame = 0 
Query:    4 FLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSASNIPPL--SSLLAKAAAVXXXXXXXXXXXXXXSQIAEGEHCKVQFKWVVSRNQRPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNTRIQGFRVVFYPYQVPGSGPPEEDDPSSLSFSHVEALETIPILHETWAWAE--EGGRGGKQGPFVVSMDDYTVAWI 224
            +L   V  L+L S+ G   LRG +  +      D+ T+L    P+  +  P   S L    +                 ++ +G HCK+Q+KW VS++Q+ S+DG+LGVIM+LD AGR+SDE+TTPAFREW  G T+EDE+EFA+CP+ +IQGFR+VFYPYQVPG+GPPE+DDP ++SFSHVEALE  P+LHE+W W E  E    GK+GPFV SM+ YTVAWI
Sbjct:    7 YLLQCVFLLVLPSMGGKAVLRGPESVVA-----DSTTNLEADPPTIISYSPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQQNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHAKIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTEGAEDREIGKKGPFVASMERYTVAWI 225
The following BLAST results are available for this feature:
BLAST of NO11G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855533.15.300e-5850.00hypothetical protein NGA_0619000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR081ncniR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00180.2NO11G00180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G00180.1NO11G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611672gene_10704Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100311g4gene5292Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00180.2NO11G00180.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G00180.1NO11G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00180 ID=NO11G00180|Name=NO11G00180|organism=Nannochloropsis oceanica|type=gene|length=1617bp
ACGACGCTTTCCATGGTGAAGCTTCAAGTATATTGGTAATATTCAACTAT
TTGGTAGGATACTGACGGGTGCGAGACTGATCATCATTATCTCTGGTAGA
AGAGTCCATGATTGATAAATTGTCTCATTTCACTCAACTCAACAAATTCC
TCTTGCGAGTGCACCCTCCGGAAGGGCTTTGTATGACGCGTGAGGAGCAG
CAGACGGACATGCACCGTGCAGAGCACCGCGGATCCATACACCCTGCACT
TAGGTCTCTTACACATATTGCAGCTTTGCTCGCCCTCGAGAATTGTCGTG
CTTAGCCTGTAAATCTGCTCGTCATCCTCTTTAGACAGAAAAATGGGCCC
AACTTGGAGGAAATAACGTCAACTAGCTAACGGCCTCGCCGAATCTCGCT
AATACCCTTATGGGACGCAACAAAAGGCGATGAGAGGGCACGCCAGCACA
CGCACCACACAGGGACATTTATTGACAACAATAAGAATGTAAAAGAAGCA
AGGGCACGTGTGTAGGGATTGCGTCGATGGTTGTTGGCTTTCCTTTCTCC
TTTCAGCAGCGTCATCATCTCTCCACTCTTATTTGCACACATACCACAAA
AACCACAGCGCACAATGTGCACCTTCCTATCCCACCTCGTGCCCTTCCTC
CTGCTCCAGAGCTTGAATGGTCACCCCACTCTGCGGGGCGCGGACAAGTC
TCTCACATTTAAGATTGACAACGACACCGAGACAGATCTGCGAGTCCATC
GTCCCTCTGCCTCAAACATACCGCCACTGTCGTCTCTTCTTGCCAAAGCA
GCTGCTGTATCAGAGACACCCGCGGGAGCCGCTGCTGCAGCAGCTGCCGA
GTCACAAATCGCAGAAGGGGAGCACTGCAAGGTGCAATTTAAGTGGGTCG
TCTCGCGGAATCAGCGGCCCTCGTCGgtaagaaaggaaggaggaatggag
ggagggtaggagggagcttgaaagagctgcacatggtcaccccttctatt
ttatctctacagGACGGAGCTCTGGGCGTCATCATGATACTGGACCACGC
CGGCAGAGAAAGCGACGAATCCACGACTCCTGCCTTCCGGGAGTGGGTGG
CCGGCGAGACTTATGAGGACGAGCTTGAATTTGCGCATTGCCCGAATACC
CGGATCCAAGGTTTTCGAGTCGTCTTTTATCCGTACCAGgtaggcagcag
gtacctcttcctctttttctactccctcgatattttcctcccttctcgtt
ctcttccctggacgccttacccccctgcacgcctccctccctccctccct
cgcccagGTGCCTGGCTCCGGTCCGCCGGAGGAGGACGATCCGTCCTCCC
TCTCATTCTCACACGTGGAGGCTCTTGAGACGATTCCTATTCTACACGAG
ACATGGGCGTGGGCGGAGGAAGGGGGAAGGGGAGGGAAACAGGGTCCGTT
TGTTGTGTCAATGGACGACTATACCGTGGCCTGGATTTTGAAGGAATGAA
GGTGAGAGAGGGGAAGGGAAAAAGGGGAAGAAGGATTGGATAGAGGCGGA
GCATGTTTTATTAGGGTGATACAGGGCAAGAAAGCAAGAAGACATATAAA
CGCAATTAAGAGACCCC
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protein sequence of NO11G00180.2

>NO11G00180.2-protein ID=NO11G00180.2-protein|Name=NO11G00180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MCTFLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSAS
NIPPLSSLLAKAAAVSETPAGAAAAAAAESQIAEGEHCKVQFKWVVSRNQ
RPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNT
RIQGFRVVFYPYQVGSRYLFLFFYSLDIFLPSRSLPWTPYPPARLPPSLP
RPGAWLRSAGGGRSVLPLILTRGGS*
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protein sequence of NO11G00180.1

>NO11G00180.1-protein ID=NO11G00180.1-protein|Name=NO11G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MCTFLSHLVPFLLLQSLNGHPTLRGADKSLTFKIDNDTETDLRVHRPSAS
NIPPLSSLLAKAAAVSETPAGAAAAAAAESQIAEGEHCKVQFKWVVSRNQ
RPSSDGALGVIMILDHAGRESDESTTPAFREWVAGETYEDELEFAHCPNT
RIQGFRVVFYPYQVPGSGPPEEDDPSSLSFSHVEALETIPILHETWAWAE
EGGRGGKQGPFVVSMDDYTVAWILKE*
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Synonyms
Publications