NO11G00040, NO11G00040 (gene) Nannochloropsis oceanica

Overview
NameNO11G00040
Unique NameNO11G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1558
Alignment locationchr11:7764..9321 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:7764..9321 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G00040 vs. NCBI_GenBank
Match: XP_005852508.1 (hypothetical protein NGA_0728000 [Nannochloropsis gaditana CCMP526] >EKU23323.1 hypothetical protein NGA_0728000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 85.1 bits (209), Expect = 4.100e-13
Identity = 68/181 (37.57%), Postives = 78/181 (43.09%), Query Frame = 0 
Query:    1 MPPTAPIVYPHQVPALAKAHARXXXXXXXXXXXXXXTGWRLLAVASVLSIWIVTKLLESETLPKVRREEADEEAAANKPARVATTQRRTGRREEGGVGSLLRGWVRGLLMGEVDATQXXXXXXXXXXXXXXXXXXXXXXXXXRGKRVK-EAWVEAEHEFSVTPEWEKARQLVELARMMRQQ 181
            MPPT   ++PHQVPALAK   R              TGWRLLAVASVLSIWIVTKLLESETLPKV  EE +                                          +                             G+  + EAW E EH FSV P+ E+ARQLVELARM R++
Sbjct:  226 MPPT---IFPHQVPALAK--TRVGTAPSSSSSASTATGWRLLAVASVLSIWIVTKLLESETLPKVHAEEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEG----------------------------GREARAEAWAELEHAFSVFPDEERARQLVELARMRREE 373
The following BLAST results are available for this feature:
BLAST of NO11G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852508.14.100e-1337.57hypothetical protein NGA_0728000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR081ncniR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00040.1NO11G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|355682gene_10721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00040.1NO11G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00040 ID=NO11G00040|Name=NO11G00040|organism=Nannochloropsis oceanica|type=gene|length=1558bp
ATGCCTCCGACTGCCCCCATTGTCTACCCGCATCAAGTCCCTGCCTTGGC
CAAAGCCCACGCCCGCATGCACTCCTCCGCAAGCTCCGCCTCATCTTCGT
CTGCGGCCACGGGTTGGCGCCTCTTGGCCGTGGCAAGCGTGTTATCAATA
TGGATAGgtacgtataaataatcatctcgcgccccaccatttctcgatgt
ctctctcctcccactttgcctccctccccttcccattccgacattttgga
ctaatgcacttgtattaagactttagaaccaggtatatctcgccacccaa
ccacatccgctttgcatgagacttgctccctgctattcctctcaaatctc
cttccctctctccccttcctgcttgcactcacccactctctcttccctgt
ttaatcagTGACCAAGCTGCTGGAAAGTGAGACCCTTCCCAAAGTGCGAC
GAGAGGAAGCGGACGAAGAAGCAGCAGCAAACAAACCGGCGAGGGTTGCC
ACCACGCAGAGGAGGACGGGAAGGCGGGAGGAAGGAGGAGTTGGATCGTT
GTTGAGGGGGTGGGTGAGGGGATTGCTGATGGGTGAGGTCGACGCGACGC
AGAGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGGAAGATAGGGGATAGAGGAGGGGGGAGGGGAAAGCGCGTGAAGGAAGC
GTGGGTGGAGGCGGAGCATGAGTTTAGTGTGACGCCCGAGTGGGAGAAGG
CCAGGCAGCTGGTGGAACTAGCGAGGATGATGAGGCAGCAGGATGGgtag
aggggaggcagggagagaaagagagagggaggactttgaggtgttggagg
aggagaaagaggaggagacgacgactaagacgacggagaggaagaaacag
gaagaggggtcgtccagtaaagtgagacgccagtgaggagatgtgaggtg
aaggggaagcggtagTCAAGAAGAGAATAGGGGGAGTGAGGGCACCCATT
TCGGGTGCTACGGGGGCAAGGAGAAGAAGGAGGAGGAGGAGGAAGAGGAG
GAGGAGGAGGAGAAGAACAGGGAACGACCTCGAGCCCCCACgtgagtcag
cggatgggaggcagggggagggaaggagggagggagggagggaattgagg
cagggaatgtaaattatctaaatcccggacgcaccatgtcctgaggcctc
gactcatcctcacgctgctccattcattatttcctctcttggtctctttc
cttccaccctcctccctcctctccacgctgctgcctgtccgagggggtgc
agACGCACAAGCAGCCTCAATGCGGCTGAGAATGAGAAGGGGGGTCACGG
CCGCAGCCAAAACAAGTACATGGGTCGCAGTGAAGGAGCGGGGGCTGGGC
GGGCGGGGCAGGCGCCGAGTCCTCGGGCCATTCGACCGGAAGACATGCCT
TTCATGCCTTTTGTACCTTTTATGCCTACCGTGCCTGCCATGCCTATGAT
GCCTTTCCGCCGAGTCGGGATTGTGGGTGCTGCAGGCACTGCTGCTTCCG
CTGATTAA
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protein sequence of NO11G00040.1

>NO11G00040.1-protein ID=NO11G00040.1-protein|Name=NO11G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MPPTAPIVYPHQVPALAKAHARMHSSASSASSSSAATGWRLLAVASVLSI
WIVTKLLESETLPKVRREEADEEAAANKPARVATTQRRTGRREEGGVGSL
LRGWVRGLLMGEVDATQREEEEEEEEEEEEEEEGKIGDRGGGRGKRVKEA
WVEAEHEFSVTPEWEKARQLVELARMMRQQDGQEENRGSEGTHFGCYGGK
EKKEEEEEEEEEEEKNRERPRAPTRTSSLNAAENEKGGHGRSQNKYMGRS
EGAGAGRAGQAPSPRAIRPEDMPFMPFVPFMPTVPAMPMMPFRRVGIVGA
AGTAASAD*
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Synonyms
Publications