NO10G04040, NO10G04040 (gene) Nannochloropsis oceanica

Overview
NameNO10G04040
Unique NameNO10G04040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1677
Alignment locationchr10:1205112..1206788 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1205112..1206788 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G04040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G04040.1NO10G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585380gene_3803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G04040.1NO10G04040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G04040 ID=NO10G04040|Name=NO10G04040|organism=Nannochloropsis oceanica|type=gene|length=1677bp
GCTTTACTAAAGCGTTTGGGTTAGACCTCAAGCACAGCACTGCGATCAGA
CAGGGACACGTTGCCTTCGCTGCCTCGCCGATTCAGTTCAGTTGAGATTT
GATTGACGCACTAGAGCCCACTTAATTCGCACACCCTCAAAATCACACAC
ACTCACACACACTCACACAATCTCCAATGACAGTGAGATAAGAGGGCAAC
GTCATGCTTGGAGGGGGCGACAGATTCCTCTTCTTCCTTTCACCGAATCA
CCAGCATCTCTTCGCGCCACTTCACCATCCCCTGCCTCCCTGACAGCACG
GTAACCCCACACGCACCCAATCACCACGACGCAAGCCCCTCCCTCACAAC
GAAAGGTTACTGGCCCGCTTGAAGCTAAAGGTGCCTACCTTTTCCCATGA
TTTTTTAGCTGTCGCCATGAAGCGTTGATTCCTTTGCGAAGAAGCTCAGC
ACGCTTGCCTCCCCTTGCCGGCTACCCCTACCACGGATGCATCCTCTCCA
TCCTACCGGCATCGCCTTCGAGCCTTGAAATAGATACTACTCACCTGCTT
TAATCAGGGGCCATAGCTGTGCCTGGGCTGCACGACAGGCTTCTTCATTG
ACCACCCCCGTATGGACGGGCCCGTGGTATCCTTTGTTTTTGACACTTGC
GGCGGTGCCTCGTATACCTCTAGCCGATCGAGTGTGTGCTGTATTATAGC
GCTATGCTACCAGGCCCGTCGAACGAGGACGCTTTCCTTTTCCCTGCCCC
CACCCCTTGACTCACCCATCCATTCTCGGGGCAAAATGAAGGCATGGGTT
AACCCTCCCTGCATGCCTTATGGGTCCCTGCGCCTACTCGCGACCAAGAC
GGGGGACATGATGACAAGGCTGACTGGCACTGCTTCCACGTGGCAAAAAA
TCGACCAAAAAGACATTCACATAACCATCCTCCCTCCCTCCCTCCATCCC
TCCCGCTCTCCCTGTTCTCGGCCCAGACAGGCATGTTCTTCACCAGGCCC
CTTCATCGCTTCGTAGCCAAGACTGTGGCCGTTACTCTGCTGGCCGGCGT
CTGCTTCCACGTCGCGATGGATAATGCCCTTGCCACGCGGGCCCCTCGAC
CTAGTGAGAGGAGGGGTGAGGAAGGGGGGGAGGAGAGGTGGGGTTTGATG
CCTGAGGAGGAGGGGGCCGAGGAGGAGGGGAGGAGGGGAGGGAAGAAGAT
AGAGGAGGAGAGGAGTGGGGTGACGAATCAGAACGAGGCTTTTAAACGGT
TCTTGTCGGAGTTGGAGACGAAGGATGCCAAGACGAGGATTGAGGAGGCG
GCCCAGGGGATGGAGTATTTTATGCAGCCCAAGgtaggagaggaaggaag
gagggaggggggaaccgaaatgcggtgatctgatttctctctcctcctac
aatcacacagGCCTTGGAAGCGGACGTGCGGTTGAAGCGAGTGCAGCGGC
CCACAGACCCTCTTGCCGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCG
TCGTTTTCATAATTCTTGACAGGAAAAAAGAGGGAGGGAGCGAGGGAGCG
AATTAGGGCCAGCGTGATTGGGAGTCGAACTGGTATCTGATGCTGTACAT
TCTGTTGATACTATTAAACATAGACAGAGCGAGAAGACAAGGAAGAAATA
GAAGACAACCTCCATCCCGCACCTTCC
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protein sequence of NO10G04040.1

>NO10G04040.1-protein ID=NO10G04040.1-protein|Name=NO10G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MFFTRPLHRFVAKTVAVTLLAGVCFHVAMDNALATRAPRPSERRGEEGGE
ERWGLMPEEEGAEEEGRRGGKKIEEERSGVTNQNEAFKRFLSELETKDAK
TRIEEAAQGMEYFMQPKALEADVRLKRVQRPTDPLAASPPPPPPPPSSFS
*
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Synonyms
Publications