NO10G03950, NO10G03950 (gene) Nannochloropsis oceanica

Overview
NameNO10G03950
Unique NameNO10G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr10:1168127..1170010 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1168127..1170010 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO10G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03950.1NO10G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629552gene_3813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03950.1NO10G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03950 ID=NO10G03950|Name=NO10G03950|organism=Nannochloropsis oceanica|type=gene|length=1884bp
AATCACATCCTATTAATCCTTCCTCTCCTGACCAACCTCCTCCTCACCCC
ACCATAGTAGGCCAGGCACCATGCCGCCCGCTCCTCTTCCTCCTCATCCT
TCCACTGCTCCTCTTCCTCCTCATCCTTCTACTGCTCCTCCTCCTCCACC
TCCCCTCCGCCCTGGCTGGACCCCAGCCCTCGCTCAACGGTTCCTCAGGC
ACTGCCTCGAAGAGAAGCATATGGCCATGGAGTTGGCACCCTCGGTCGTG
GAACATGTCGGCTGGATACTTCGAgtaagtgtgatacagagggaagcgag
acgctgaagagaaaagaagtagccaaactttaagaactcattttcctcca
ctctaaatggatacctgaatacacagGGCTTACGCGCTATTCAGCAGCCG
TACGAGCCAATCTCCTCCTCTTTCCCTACTGACTTTGACAGTCACAAGGA
TCTATATACATTCTTCCTCCGCCTCCGCACCTATAACAATAGCAGTAGCA
GCAGTCAGAGTGCCACCGCCGTCTACCCCTCTCATACTCTCGCCCGTGCA
AATAAAAAGGCGACGCAGGACTGCGAGAAGTGTAATCTTGACGAGAAGAC
TGAGAAGGAGGAAGCCATTTACGCGTTCGTGGACAAAGAGGGGGTTGGGA
GGATGCGACGACGACGgtacgtacgttggtagggtggaaagggagggaag
catgggagggaaggaaggaggagtattggattcgtgcctagagagatcga
aggtggaaagcaaagcttgacggatcgtaaaggcgcaaggaatagtaata
atggcgcgatcactcagtcctctcctctccttctaactttcccattactt
cctatttctttcttatttctctctcttccttaagTCACTACATGCTGCTC
AAGCGATTCGCCGACGGTTACGCTGGTCGAGAGAACGAGGAGGTGGGGGA
AGGGGAGATGGAGGATGAACGAGGACAGGAGGATGGTAGGGGGGAAAATA
AATTGAAGAAAGGGCTGCAAGAGAGCGTCAGCCAGGCTACCGTGAGTGAT
AAGGGGATGGTTGTGGAGAAGGAGGGCACTGATGGGGAGGTCGCGGAGGA
GGTAGAGGGCAAAGAGACCGTGAAGGATGAGGGGAAGAAAGAGGAGGAGG
AGATGTCGGCGCGGCCCATCTGTTTTTTCTCGAAAGGCACTAAGTTTGAC
GCTAGTGACGATGGTATCAAGGGTGGTGCTGACGCTGGTGTTGGTGGAGT
AAGCACGGGAGGTGAGGACCCCAAGAGGGGGGACAAAGACAAACAGGTGG
AGCAGCAGGAGCAGCAGCAGGGGCCAATGGAGGAAGAGAAGGAAGGAGAT
GGTCGTCGTAGTCGCGATTGGTGCCTTCAGGATTGCACAGACAGTACCTG
TGTAGCGCTATGGCTGGAAGGGGAGGAGGAGGTGGGGGAGAAGGGGGGAG
GTGAAGGGAGGGGCATGGGAGGAAGGAAGGTCGTTGGAGATAAAAAGAAA
AGGATGAGTGAGGAGGCGCAGTGACGGTAGAATAAGGCAAGAAAGTTTAG
GTTGGTATCCATATCACTTCTGCTACCTCCACCAGCAACAATGGGATAAG
CGACAGATGTGTCGCAAGGGGTAAGACGGGAATGCTAGCATCCAAGGGAA
AAGGCGGAGAGGAAGGAGATGAAGGCCATCAGAGGATGGTCACGACGCCG
AGATGAATTGTCTGTGGGAGGCAACAAGAAAGTGGACTGAGGGGAAAGAA
AAGAATGTTGAGTGACAAAATCATAGCGGCTGTTGCTGGGGGGGTGGAGT
AAGAAGGAAGAAGCACAACGAAACAACCAGGCCAAGCGAGCAATGTATGC
CTTTGTGTATACGTCTACATGTCGACGGAAAAAG
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protein sequence of NO10G03950.1

>NO10G03950.1-protein ID=NO10G03950.1-protein|Name=NO10G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MPPAPLPPHPSTAPLPPHPSTAPPPPPPLRPGWTPALAQRFLRHCLEEKH
MAMELAPSVVEHVGWILRGLRAIQQPYEPISSSFPTDFDSHKDLYTFFLR
LRTYNNSSSSSQSATAVYPSHTLARANKKATQDCEKCNLDEKTEKEEAIY
AFVDKEGVGRMRRRRHYMLLKRFADGYAGRENEEVGEGEMEDERGQEDGR
GENKLKKGLQESVSQATVSDKGMVVEKEGTDGEVAEEVEGKETVKDEGKK
EEEEMSARPICFFSKGTKFDASDDGIKGGADAGVGGVSTGGEDPKRGDKD
KQVEQQEQQQGPMEEEKEGDGRRSRDWCLQDCTDSTCVALWLEGEEEVGE
KGGGEGRGMGGRKVVGDKKKRMSEEAQ*
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Synonyms
Publications