NO10G03880, NO10G03880 (gene) Nannochloropsis oceanica

Overview
NameNO10G03880
Unique NameNO10G03880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2272
Alignment locationchr10:1132041..1134312 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1132041..1134312 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022203DUF3727
Homology
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BLAST of NO10G03880 vs. NCBI_GenBank
Match: EWM25583.1 (hypothetical protein Naga_102870g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 3.300e-37
Identity = 74/98 (75.51%), Postives = 91/98 (92.86%), Query Frame = 0 
Query:  138 KIDPDFADRPAPPPGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEGKTFTLMKFVQPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLES 236
            +IDPDFADRPAPPPG+ ++ P+Y+FDARD+SY+EDEEED+EDMAEPICDF ++ KTFT+MKFVQPYFVV +R AG EG+WELL+G++AEQVFDWVLES
Sbjct:    7 QIDPDFADRPAPPPGAKSEAPYYDFDARDDSYEEDEEEDLEDMAEPICDFTYQDKTFTVMKFVQPYFVVGEREAGKEGAWELLVGDKAEQVFDWVLES 104
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BLAST of NO10G03880 vs. NCBI_GenBank
Match: EWM25584.1 (hypothetical protein Naga_100377g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 3.700e-28
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0 
Query:   42 LVTRGGKEYMIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKEMGATLVRSAGTLTIEGDVEIYDE 115
            LVTRGGKEYMIGLPIDTPVVVVD+KMNALE+GFD RLP MLPTVEATL +MGATL+RSAGTLTIEGDVEIYDE
Sbjct:  106 LVTRGGKEYMIGLPIDTPVVVVDEKMNALELGFDARLPEMLPTVEATLTDMGATLLRSAGTLTIEGDVEIYDE 178
The following BLAST results are available for this feature:
BLAST of NO10G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25583.13.300e-3775.51hypothetical protein Naga_102870g1, partial [Nanno... [more]
EWM25584.13.700e-2890.41hypothetical protein Naga_100377g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001248NSK001248Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03880.3NO10G03880.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G03880.2NO10G03880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO10G03880.1NO10G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|414935gene_3819Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100377g1gene4924Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03880.3NO10G03880.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G03880.2NO10G03880.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO10G03880.1NO10G03880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03880 ID=NO10G03880|Name=NO10G03880|organism=Nannochloropsis oceanica|type=gene|length=2272bp
TTGACCCCCACTTCTTTTTCTTCTTTTATTTGTATTTTATTTTTATATGC
TGTGTGTGTGAGCACGGAGGGCAAAGTGTGTAGATATGGGCCGAGGAGAT
GCAAGCAAGTGGATTCGGAGCGAACTCTTCCTTTCCCTCGTCGTTACCCC
CTTGCCAAATTCCAGCCCGACACTTACACACATCATGCACACACACACAC
AAACAACAACAACGATGATAGGCCACCTTATCATGAAGCTCTCCGTGGCC
TTGGCCCTTTTTGCCCCGTCCCTCTCCTCGGCCTTTCTGTTGCCTGCCGG
CCTCCCCTCCCACCAGTCGACGCACCAGCAACACCAGCATCGATGTGCCG
CATCGGgtgcgtctgccagaataaaaattgggggatacatgatctaaatc
catgcaatatcacatgtcctagtgtgttcacatgcaccggccagcgtgca
taaatcgtgccatcttttcccctcgatcgcatcctgactcccagtcacca
ctatccatcccccccccctctcagCGGCCCCTCGTGTCCCCGCCCCCACA
GCCCTATGGATGGCCAAGGGCAAGAGCGGCAGCAACGACAAGAAGAAGCC
TCAGGAGgtacgtagcttcatgtgtagtacgctgttcttgtgtgctgagg
gagggaggggtagtagcatgatagcgtcatgtcaccatccgcctcctcat
cgcatctctccctccctccctccctccctccctccctccctcttttcctc
catcctttccgcttctccctagATGGAGATCCGCCATTGGGATGAGGATG
ATGAGCCGGAGTTTCTATTGATTACGGACAGCAAGACCCAGGCCACTATC
AATTGCACGGCCGAGACTgtgaggggggagggagggaggaggaagggagg
gagggagggagggaggagagtgtattcgacaggagtggtaggcatatctt
acagtcaatgcaaaatgcacttctctcgtagctgcaatccaaatcgatcc
tttggtctcatcatcccctttctacaacctggcatctctcatctctccct
cccttcctccctccctccctccttccatttttcccagCTCGTGACCCGCG
GCGGCAAGGAGTACATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTA
GTGGACGACAAGATGAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCC
CAGTATGCTCCCCACGgtacgtcttcccctccctccctccctccctccct
ccctccctccctcccttttttgtaccccacgatcgcatgagagcaagggt
cacactcacccctccctccctccctccctccctccccgcctgcctcttgc
agGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGgtgcggagggagggaggggaaggcgggaagagggag
ggagggaaggagggtgagtcaaaggaggcccaaaaccggaaggggaaaca
cgtatccacctccctccctccctccctctcagATCGACCCTGACTTTGCC
GACCGCCCTGCGCCCCCGCCCGGGTCCACAAACGACCCTCCATTCTACGA
GTTTGACGCGCGCGACGAGAGCTACCAGGAGGACGAGGAGGAGGACATGG
AGGATATGGCCGAGCCCATCTGTGATTTTGCCCATGAGgtacgccctccc
tccctccctccctccctcacaagcttttgtccgagccgacgcctactcct
tcttcctgatcccctcctccctccctccctccctccctccctccccccct
tgccagGGCAAGACCTTCACGCTCATGAAGTTCGTCCAACCGTACTTTGT
GGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATGGGAACTACTGATGG
GCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGGAGAGCGgtgagtcc
ccccctccccccctccctccctccctccctccctccctttcttccttgag
atggaaagagccccgtttctgccttttcactgatgtcgcctctgatatct
ccctccctccctccctccctccctccctccctagACCTGGACTACGAGTT
CCAGCTACTGGAGGACGAGAATCAGTAAAGAACCCTCAGAGGGAGATAAG
GGAGGGAGGGAGGGAGGGAATG
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protein sequence of NO10G03880.3

>NO10G03880.3-protein ID=NO10G03880.3-protein|Name=NO10G03880.3|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MAKGKSGSNDKKKPQEMEIRHWDEDDEPEFLLITDSKTQATINCTAETLV
TRGGKEYMIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKEMG
ATLVRSAGTLTIEGDVEIYDEEGEREDEDEDEEGDGPDSLPFEQKIDPDF
ADRPAPPPGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEGKT
FTLMKFVQPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLESDLDYEFQL
LEDENQ*
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protein sequence of NO10G03880.2

>NO10G03880.2-protein ID=NO10G03880.2-protein|Name=NO10G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGRGDASKWIRSELFLSLVVTPLPNSSPTLTHIMHTHTQTTTTMIGHLIM
KLSVALALFAPSLSSAFLLPAGLPSHQSTHQQHQHRCAASAAPRVPAPTA
LWMAKGKSGSNDKKKPQEMEIRHWDEDDEPEFLLITDSKTQATINCTAET
LVTRGGKEYMIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKE
MGATLVRSAGTLTIEGDVEIYDEEGEREDEDEDEEGDGPDSLPFEQKIDP
DFADRPAPPPGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEG
KTFTLMKFVQPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLESDLDYEF
QLLEDENQ*
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protein sequence of NO10G03880.1

>NO10G03880.1-protein ID=NO10G03880.1-protein|Name=NO10G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MHFSRSCNPNRSFGLIIPFLQPGISHLSLPSSLPPSFHFSQLVTRGGKEY
MIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLPTVEATLKEMGATLVRSA
GTLTIEGDVEIYDEEGEREDEDEDEEGDGPDSLPFEQKIDPDFADRPAPP
PGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEGKTFTLMKFV
QPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLESDLDYEFQLLEDENQ*
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Synonyms
Publications