NO10G03600, NO10G03600 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03600
Unique Name	NO10G03600
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5319
Alignment location	chr10:1028535..1033853 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1028535..1033853 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

[Close]

BLAST of NO10G03600 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 8.800e-16
Identity = 65/195 (33.33%), Postives = 98/195 (50.26%), Query Frame = 0

Query:  164 CSPVDGPDLERMVAGSSTCGVILLTKGSMVPYF---TENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSGGSLDIRFVSVFKAYGRAPSEDLRIVAGGVALVRLGGFFRGTAVIFREPTQTFKAFQGALERPYQRR--RKYGGHVLVLGGSFFCYGCQIIRWNPYGGILLNVFQLGRDFLVVAGTSVMTGV 354
            C P  G +L +M    S C +I L  G +       +++ + +STRK+I+G+PI LP I      +R+F +V+GG+LD++FV  ++  G   +  + ++ GG ALV LGG F    VIF             L  P   R  R +GG V V GG             P G +   ++ +G D LVVAG +V++GV
Sbjct:  152 CVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADS-KRIFHIVAGGNLDLQFVRTYRGGGELIA-TIPVLRGGTALVELGGRFSAFGVIFTNAPPV--GMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQP-GVLFREIYVVGADLLVVAGVAVLSGV 341

[Close]

BLAST of NO10G03600 vs. NCBI_GenBank
Match: XP_005852474.1 (hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526] >EKU23358.1 hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.1 bits (196), Expect = 5.000e-11
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 0

Query:  234 GGSLDIRFVSVFKAYGRAPSE--------------DLRIVAGGVALVRLGGFFRGTAVIFREPTQTFKAFQGALERPYQRRRKYGGHVLVLGGSFFCYGCQIIRWNPYG 329
            GG L++R V ++K  G +                   ++  G    V LGG FRG+ V+FR    T + F   L+ P + RR +GGHV V GG F CYGC  I  +PYG
Sbjct:    3 GGKLELRSVCLYKGSGESLGALGGGRKLQSGLGIGKTKLTMGPAVYVHLGGVFRGSGVVFRSMRGTLEGFLKTLQEPLEARRTFGGHVFVAGGQFLCYGCFFIGVSPYG 111

[Close]

BLAST of NO10G03600 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-9
Identity = 60/192 (31.25%), Postives = 92/192 (47.92%), Query Frame = 0

Query:  164 CSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENTMVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSGGSLDIRFVSVFKAYGRAPSEDLRI-VAGGVALVRLG--GFFRGTAVIFREPTQTFKAFQGALERPYQRRRKYGGHVLVLGGSFFCYGCQIIRWNPYGGILLNVFQLGRDFLVVAGTSVMTG 353
            C+P  G  L  +V  + +C VI LT G  V Y  +  + V    +I+G P+ LP I     + R F V + G LD+RFV V++    A  +++ + + GGVA +R G  G F G  ++  +           L       R YGG +L+  G+     C ++   P G +L  V+ +G   LVV+G   MTG
Sbjct:  188 CTPDTGVQLRSLVE-TGSCPVITLTPG--VRYVLDEEIHVRRAVVIIGRPLTLPVI-DAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLR---VTARLYGGFLLLEAGTLRVRDCHMLLQRP-GVLLREVYTVGGYILVVSGNLFMTG 371

The following BLAST results are available for this feature:

BLAST of NO10G03600 vs. NCBI_GenBank

BLAST of NO10G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13


Match Name	E-value	Identity	Description
EWM25479.1	8.800e-16	33.33	hypothetical protein Naga_100207g1 [Nannochloropsi...	[more]
XP_005852474.1	5.000e-11	36.70	hypothetical protein NGA_0689200 [Nannochloropsis ...	[more]
EWM26817.1	2.700e-9	31.25	Pectin lyase fold/virulence factor [Nannochloropsi...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL052	nonsL052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR004	ncniR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO10G03600.1	NO10G03600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO10G03600.1	NO10G03600.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO10G03600 ID=NO10G03600|Name=NO10G03600|organism=Nannochloropsis oceanica|type=gene|length=5319bp
ATTTACTGGCTTTCTGGCTCCCCCTGTTCTTCTTGAATCCACATGCTACC
TACGCCAGAAAGACTGATAAAAAGCGATTGCTTGGCCCTGTGATCACTCG
GCCCTTTTAAAGCTGATTAGACACTTGTCGAATCGCAATCGCTCACTTTG
CTGCAACATGCGACCAAGCGACATGCCAAACTATGGGCCCCTCGACTCTA
CTCGCTTCCTGGCTCGCCCTGTTCTTCTTGGAACTCACGTGCCACTAAAG
CTCGCGAGAAAAACAAATAGCGACCGCTAGGCGTCTTGCTTTCTTTTGGC
CACTTTTGAAGCTGAAAGACATTTGTTGAACCGCATCGCTCACTTGACCG
CAACGAGTTACCAAGCGGCACGCCAAATCATCGGTCCCCACCGAGGCATA
CGGGCGGTTGAGTTGAATGGGAAGCAAGCGTCCACCGCCCGCTTGAAATG
AAGTCTGTGATTGTTGGTCAGCCTCTTAAGAGCATTCCATGCTCCGCATA
AGCTATGGCCGTTCACATCCACACTATCACTCTCACACCACTCCTCGCCT
TCCCTCGCCCTTTCCTGTAGACTAAGGTGCAAGACGAGCAGAACAGAACA
CAGGGTCCCAGCTGTCCGTATCATTTCCGTCCCATGACTTCCGGAGCGAC
CATGAACGAGGCCGGGCCCCAAGAGGAGTCCCGACGCCGTCGCCGGCGTG
TTCTACTGGGCTCGCTGGGTGCAGTGTGTCTGATCGTCGGTGCCGCGTTG
GCCATAACCTTTGCTGGAAAGGGCCAGGGCAAGAATAAGCCGGAGCCGGC
GGCCACTGTAGAGGGGAATTTGTCTCCGATGGGAGACCTTCCAGGCCTTG
TGAAGGATTCAGgtgagaaaacataagggaaggacggcaggaaatggagg
gtgcacaccctgtgcgcagaactgaccccctgagttgacatcttggagct
ctagtggtggtggtgctggtggtgctgcccgtactatctgaatgtgtaca
atgtcgagccccctcattgaatgtatcttcttatgccttcgacgaacgta
tcttgtgtccctgccattctcttcttggccgctttaatcgcatcaagggg
cagctccgacacctccggtgcaccgattctttgccggctttgctccccta
actcgctccttttgcccctctccttttccccctcttgcaccgctctgatg
atcagcagcattaccccttaccataacgattcaatcgtttctctgacaca
tctccgtttcccacctccctctctcctgcgctacagTGCTGTCAACCACC
GCGGGCACCACCGGTGCCGCTCCGAAATCCGTAGGTACGACGGTGACGCC
CGCTGTCCCCACAGCATCGAAGGCAGCGCCTGCTGAGGGTACTGGCGACC
TCACGTTTCAGAACTTCCTCGAAACCGGCACGGTGGGAGGCGTTGGCCTC
GGCGCGGCACTGGGTGCTTTGCCCGGGGCCTCGACCGTGAATGGAGCCTT
CAACGGCTTGGCGAGTAATTTGGCCAACCTGGCAGGCCTTCGTGTCTGCT
CTCCCGTGGATGGTCCTGATCTGGAGCGAATGGTGGCGGGCTCGAGCACT
TGCGGCGTCATTCTCCTGACGAAGGGCTCTATGGTCCCATACTTCACGGA
GAACACGATGGTTGTGTCAACCCGCAAGATTATCGTGGGCCACCCTATTG
ACCTTCCTCAAATTAGGACGGTAGGGAAACTAGAGCGGGTCTTTGACGTG
GTGTCGGGGGGCTCCTTGGACATTCGTTTCGTGAGCGTCTTCAAAGCATA
CGGCCGAGCACCCTCAGAGGACCTCCGTATCGTCGCCGGGGGTGTTGCGT
TGGTGCGCTTGGGAGGCTTCTTCCGCGGTACGGCCGTGATTTTCCGCGAG
CCTACTCAGACTTTCAAAGCCTTTCAAGGCGCGCTGGAGCGCCCCTATCA
GCGTCGCCGCAAGTATGGCGGGCACGTCCTGGTCTTGGGAGGCTCCTTCT
TTTGTTACGGATGTCAGATAATCCGGTGGAACCCTTATGGCGGGATTCTT
TTGAACGTTTTCCAGCTTGGTCGTGATTTCTTGGTTGTTGCCGGGACGAG
CGTCATGACTGGCGTCTATCATTTGGCCTTCACACCTTTCGGAAGCGCAG
TCAGCGTTGGAAATGCTATCGCTGTCCTGGGCGGCGTCAGTGTTCGCATT
GGCGGCGGAACAGAGGGGGTTGCGATTCTCAAGGGACAATTTGgtaggtc
gtgcgtgggtgaaggagacgagggatagaaggggaacagtagcaaaaagg
cattcaatagcatcatgacaggtcatcattggcgaagtaggaaagccttg
gacgcacgaaagccttggacgcacctaacactcatccccaaccaaaatac
acacacgaacataatcatactcgcgcacgacagGTGCCGGCCAGAATATA
TTCGTGGGCGGTGGGGTGCTCGTGAATGTGGGCCATCAGCAGCAGACCGC
CTTTGTGTGCCTTGTGCGTGCGGGCTACGGCATGACTGCTATGGGTGCTG
GGGTGTTTGTACTTATTGCGGAGCTTGAGAACCGTGCGTGGGGTGTGGCT
TCCATCTTCGGTGCCGGGCAGGTGTACTCCAACGGCGCGGGCGTTATGGA
CAAGACTGGTGGAGAGGTCGTCAACAGTGCTATTTCGGCCTTCCAAGCCC
TGGCCGGCGGGTCCGCgtacgtcagatttctctctctataccccgttcct
tctctcatgtttcattgcttacagaggagactagagtgtgtttttgtctt
gctgaaatatatgcaataccttttgggggttgtgtgacaggaagcggcca
aggtacagcactcactccatccatatttttttcctccttctatttctccc
acccatgatagCTATTTGGGCGCGGGTGACATGAACATTGTGGGCGAACA
GTTTGCGCGACTTGCTTTAACCCTGGACCAGAATGGCGTTGGCATGACTT
TCTTTAACGGGGCTGGGCACGGAACTATGATCTACGTCCCCAGTTTGGTG
ATTTGCCTCGTCCGTTCTCAGAAGATTCTCGGTGCCGAGgtacgtctggc
tatgcgagatgcgaattccgtctgtccgtttcgcgtttttgatgatcgat
gtgtctgtcggtccctctcctctgattctaattttggtttttgtccttgt
cctcgtatgtattgtttcgcctctctgtgtttcctgtatcgattgtgttt
gtgcccgcaacctacctgtctctgcactcatccacggactcttaactgag
tgctctcgcgggactgaaccctggtagttgaagggcttgtctgtaatctg
tcggcgttttttcctcacacacacacactctccccatcgctttcttcgat
gaatatgcccccccatgaagtgtggtctcatatatctctttgatgtctca
ctccaacttgtttagGTCTTCCAAGGAGCCGGGTTTCACACAGAAGTCAA
CAATACACGCTGGACAATTCAATTGGTGAATGCGCAAATGCCGGGTTATG
AAGGCTGGATCGGGCTGGGTGCCTCTCTGATGATCCGGTCGCGGACCACT
GTCAGGCGTCTGGTGAACTACCGCGCTGCCAAGAAAGTGGCTTGGGTGGT
GAATGGGGTCGGTGTCAACGAATCGCTGAGGAGCAACTTCAACATTTTTA
CCGACAAGAACGGCACGACAGTCCTGAAGCCGCACGCTAAAAATGGCAAG
CACCGACTCCTGGAAGCTGTGGATGAACTTGTGAGCAGTGCTGCCAGCAC
ATCCAACAGGCGGGCCCTTATTAAAGGTTTTAGTCGTCCTGCTTTGAGCA
TGGCCGACAGTGTGATGGACTCGAAGAAGGTTCAGCCTCCTAACCCCGGG
ATTCTGGCCGAAAAACTGCAGGCCCTGGTGTCGGGTTTGAAGAATAAACG
CCGTCTCAAAGGGCAAGCCGCGGTCAACCCCACCCGTATCATGAACATGT
TCCAAGGCCTGTCGCCAGCCTCGCTCATGAAAGCTTGGCAAGAGGCCGTG
GACGAGACTAACAACAACAATGCTCTCGGTAGCAACACCAACGATCGTGC
CTTGGCTGCAGGAAACGATGCCGACGAGGTGGACGCCGACGGCCGGTGGG
GCGAACAGGTGTACGTGGGCGGCGGTGATGCCTCGCAGTGTGTGCTGTGC
GGGGTCGGTCCCGGGACGACCGAGTCCCACTGGAACAGGGACGCAGGCGA
CGACCCAGCCACCTGCCATATCACGGAGGCATGCACTCCTGCAGATTCAG
TCCAAGGCATCATGGGGAAGCTCAGAGGAGCCTTGCCGGATGGGGAAGAC
TTAGTATTGTCGCCCGCGGCGAAGGGCTGGGCCAAGACGGTGGGCTCCAA
GTACACGGCGCGTCTCTTGCAAGATATCGACGATCACCAGGCGGAGAATC
CCGGGGCGGATATCAAGCTGCCGGACACGAACATTTTGACCTACGACATT
TTCCTGTACTGCCCCGTGGCCGATGCGGAGTGTGAGTATAGCCAGGCAAA
CATGAAGGCGGCATTCCAAGACTATCTCGACGATGTGGCGCAGGAGGAGA
CTGCGTTCAAGATTTCGTCGGCGACTGCAGCGGTGCATCCGGCTATCTCT
AAAATTGTGAATGATGCTGACGGAGACTTTGTGTCGGCCATTGGGGCGCC
GGCGCTAGAGGGGTGTGGGAAGGGCCTCTCGTTTTCTCTTTTCGTGACGG
CGCCCGACAAATCTTCGGTGACGGATGTGAAGACTATCCTGGAAAAAGCA
GGTACCGACAGTGATGAACTTCTGGCCTTCATCAACGACCAAGGGGAGCA
GGAAGCATCCTTCTGCAGCGTGAGCGTGACGAAGCGCTCAGCAATGTTTT
TCCCGTCCGTGGACACGGCGGCAGGGAAGAGCTTCTATCAGAAGCTTTAC
ACGGGCAACGCGCTGGATTCCGGGAGCCTCTGGCCCGACATCACGGTGGT
GTCGGCGCACGAGGTGGCCCCCGTTCAGCACGCAGTGGCGGATCAGTCCT
ACACACTTTTGTTGGAGGGCTTTGCCATGAAGGCGGAAGTGGTGGTGGAG
CTGTTCCAGGGCACGCAGAGCAGCGGGGTGGAGGTGGCCAGGGTCCCTGG
TGGCATGGGCATCGGCGAGACACGCGAGGTGGCTTGGACGGCTCCTGCGC
CCATGAATGGGGACGGTGGGAATCGGGCTTACGTGCGCGCCTACCACGTT
GGGATGCCGGGCATCTTTGCACAGAGCGAGGTCTTTGATCTCTTGCCCTT
GTCTGTGCTGGATGACTAA

protein sequence of NO10G03600.1

>NO10G03600.1-protein ID=NO10G03600.1-protein|Name=NO10G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1167bp
MTSGATMNEAGPQEESRRRRRRVLLGSLGAVCLIVGAALAITFAGKGQGK
NKPEPAATVEGNLSPMGDLPGLVKDSVLSTTAGTTGAAPKSVGTTVTPAV
PTASKAAPAEGTGDLTFQNFLETGTVGGVGLGAALGALPGASTVNGAFNG
LASNLANLAGLRVCSPVDGPDLERMVAGSSTCGVILLTKGSMVPYFTENT
MVVSTRKIIVGHPIDLPQIRTVGKLERVFDVVSGGSLDIRFVSVFKAYGR
APSEDLRIVAGGVALVRLGGFFRGTAVIFREPTQTFKAFQGALERPYQRR
RKYGGHVLVLGGSFFCYGCQIIRWNPYGGILLNVFQLGRDFLVVAGTSVM
TGVYHLAFTPFGSAVSVGNAIAVLGGVSVRIGGGTEGVAILKGQFGAGQN
IFVGGGVLVNVGHQQQTAFVCLVRAGYGMTAMGAGVFVLIAELENRAWGV
ASIFGAGQVYSNGAGVMDKTGGEVVNSAISAFQALAGGSAYLGAGDMNIV
GEQFARLALTLDQNGVGMTFFNGAGHGTMIYVPSLVICLVRSQKILGAEV
FQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVN
YRAAKKVAWVVNGVGVNESLRSNFNIFTDKNGTTVLKPHAKNGKHRLLEA
VDELVSSAASTSNRRALIKGFSRPALSMADSVMDSKKVQPPNPGILAEKL
QALVSGLKNKRRLKGQAAVNPTRIMNMFQGLSPASLMKAWQEAVDETNNN
NALGSNTNDRALAAGNDADEVDADGRWGEQVYVGGGDASQCVLCGVGPGT
TESHWNRDAGDDPATCHITEACTPADSVQGIMGKLRGALPDGEDLVLSPA
AKGWAKTVGSKYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPV
ADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDA
DGDFVSAIGAPALEGCGKGLSFSLFVTAPDKSSVTDVKTILEKAGTDSDE
LLAFINDQGEQEASFCSVSVTKRSAMFFPSVDTAAGKSFYQKLYTGNALD
SGSLWPDITVVSAHEVAPVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQ
SSGVEVARVPGGMGIGETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIF
AQSEVFDLLPLSVLDD*

Synonyms

Publications