NO10G03570, NO10G03570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO10G03570 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.4 bits (760), Expect = 4.800e-77 Identity = 153/271 (56.46%), Postives = 197/271 (72.69%), Query Frame = 0 Query: 1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272 MRF + L V A + S+K GGP+ RVKRM+ T TAAT+ + + +IQDSW+ D +L A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T DG+HRALT EERRMTELV RVE GD A +L D +ADSLW IDLSE KGK P+ ++ LR+I M E+P FDLITG+DPLV+KVL+DPSMLF Sbjct: 1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268
BLAST of NO10G03570 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana]) HSP 1 Score: 207.2 bits (526), Expect = 6.500e-50 Identity = 110/199 (55.28%), Postives = 143/199 (71.86%), Query Frame = 0 Query: 1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVE 200 MRF + L V A + S+K GGP+ RVKRM+ T TAATA + + +IQDSW+ D +L A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T DG+HRALT EERRMTELV RVE Sbjct: 1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVE 196
BLAST of NO10G03570 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana]) HSP 1 Score: 114.8 bits (286), Expect = 4.400e-22 Identity = 69/222 (31.08%), Postives = 116/222 (52.25%), Query Frame = 0 Query: 57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLVKKVLTDP 268 +DSWA + LK A+RL++GDH +++ +M L +++ I+S P +L+A P+ +LPG AL K +D+T D + IL R F A++ + +P E+++K A HR L E + ++ L +V GD A E+ D V D LW G +D ++ GK P + + +R ++PA +D++T DDP + +++TDP Sbjct: 101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFITQLMTDP 309
BLAST of NO10G03570 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 105.9 bits (263), Expect = 2.100e-19 Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 0 Query: 57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLV 261 +DSWA + LK A+RL++GDH +++ +M L +++ I+S P +L+A P+ +LPG AL K +D+T D + IL R F A++ + +P E+++K A HR L E + ++ L +V GD A E+ D V D LW G +D ++ GK P + + +R ++PA +D++T DDP + Sbjct: 101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFI 302
BLAST of NO10G03570 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 65.1 bits (157), Expect = 4.000e-7 Identity = 45/182 (24.73%), Postives = 82/182 (45.05%), Query Frame = 0 Query: 88 NEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSEL--KGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDP 268 +E+K +SDP + TP ++ L +KE T D + +ET++ + + ++ + +P +A M +N P L+AR++ G+ A ELQ + D G IDL+E+ G+ P I+++ R+ E+P +D I +DP+ +K + P Sbjct: 9 DELKATWSDPVVFRFLRDQTPFLKAFKPLRPL--FSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDP-----------------EWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAP 171 The following BLAST results are available for this feature:
BLAST of NO10G03570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03570 ID=NO10G03570|Name=NO10G03570|organism=Nannochloropsis oceanica|type=gene|length=1800bpback to top protein sequence of NO10G03570.1 >NO10G03570.1-protein ID=NO10G03570.1-protein|Name=NO10G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bpback to top Synonyms
Publications
|