NO10G03520, NO10G03520 (gene) Nannochloropsis oceanica

Overview
NameNO10G03520
Unique NameNO10G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr10:1003155..1004820 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1003155..1004820 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO10G03520 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 223.0 bits (567), Expect = 1.100e-54
Identity = 136/291 (46.74%), Postives = 166/291 (57.04%), Query Frame = 0 
Query:   15 AVSVGNAIAVLGGVSVRIGGGTEGLRFSRDNL-VPARIYSWAWVLVNVGHQQQTAFVCLVRAGYGMTAMGAGVFVLIAELENRAW---------------VWLPSSVPGRCTPTARALWTRLV---------------ESRQQCYFGLPSPGRRVRFGD---------------CLVRSQKILGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVNYRAAKKVAWVVNGVGVNESLRSNFNIFTDKNGTTVLKPHAKNGKHRLLEAVDEL 260
            A+SVGNA+ V GGV++RIGGGT G    +        I+    V+VNVGHQQQTAFVCL+RAGY MTA+G+GV VLIAELENRAW                 +     G     A +++  +V               E   +    L   G  + F +                +VRSQKILGAE F GAGF T VNNTRWTIQ+VNA +PGYEGWIGLGA+L +RSRTTVRR+VN+R     AWVVNG GV  S     NIF +K+G  + KP+    K RLL AVDE+
Sbjct:  361 AISVGNAMGVFGGVNIRIGGGTIGSSVLKGQFGAGQNIFVGGGVIVNVGHQQQTAFVCLIRAGYAMTAVGSGVMVLIAELENRAWGVAAINGAGQVYANGAGVLDKTGGEVVNCASSVYQAIVGGSSYLGTGDMNIVGEQYARVTVTLDQNGVGLTFFNGAGQTSLIYVPSFVSAVVRSQKILGAEAFLGAGFFTNVNNTRWTIQVVNAGIPGYEGWIGLGAALFVRSRTTVRRVVNFR-FNPYAWVVNGQGVPGSAYRENNIFVNKDGIRINKPNP--SKSRLLAAVDEM 648
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BLAST of NO10G03520 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 143.7 bits (361), Expect = 8.200e-31
Identity = 96/241 (39.83%), Postives = 114/241 (47.30%), Query Frame = 0 
Query:   64 QQQTAFVCLVRAGYGMTAMGAGVFVLIAELENRAWVWLPSSVPGRCTPTARALWTRLVESRQQC--YFGLPSPGRRVRFG-------------------------------------------DCLVRSQKILGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVNYRAAKKVAWVVNGVGVNESLRSNFNIFTDKNGTTVLKPHAKNGKHRLLEAVDEL 260
            QQQTAFVCL RA +GMTA+G+GV VLIAELENRAW     +  G+       +  +       C   F     G  V  G                                                              F T VNNTRWTIQ+VNA +PGYEGWIGLGA+L +RSRTTVRR+VN+R     AWVVNG GV  S     NIF +K+G  + KP+    K RLL AVDE+
Sbjct:  413 QQQTAFVCLNRANFGMTAVGSGVMVLIAELENRAWGVAAITGAGQVYSNGAGVLDKTGGEVVNCAISFFQALAGGSVYLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTNVNNTRWTIQVVNAGIPGYEGWIGLGAALFVRSRTTVRRVVNFR-FNPYAWVVNGQGVPGSAYRENNIFVNKDGIRINKPNP--SKSRLLAAVDEM 650
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BLAST of NO10G03520 vs. NCBI_GenBank
Match: EWM25326.1 (hypothetical protein Naga_100880g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 1.100e-30
Identity = 95/241 (39.42%), Postives = 114/241 (47.30%), Query Frame = 0 
Query:   64 QQQTAFVCLVRAGYGMTAMGAGVFVLIAELENRAWVWLPSSVPGRCTPTARALWTRLVESRQQC--YFGLPSPGRRVRFG-------------------------------------------DCLVRSQKILGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVNYRAAKKVAWVVNGVGVNESLRSNFNIFTDKNGTTVLKPHAKNGKHRLLEAVDEL 260
            QQQTAFVCL RA +GMTA+G+GV VLIAELENRAW     +  G+       +  +       C   F     G  V  G                                                              F T VNNTRWTIQ+VNA +PGYEGW+GLGA+L +RSRTTVRR+VN+R     AWVVNG GV  S     NIF +K+G  + KP+    K RLL AVDE+
Sbjct:  413 QQQTAFVCLNRANFGMTAVGSGVMVLIAELENRAWGVAAITGAGQVYSNGAGVLDKTGGEVVNCAISFFQALAGGSVYLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFTNVNNTRWTIQVVNAGIPGYEGWVGLGAALFVRSRTTVRRVVNFR-FNPYAWVVNGQGVPGSAYRENNIFVNKDGIRINKPNP--SKSRLLAAVDEM 650
[Close]
BLAST of NO10G03520 vs. NCBI_GenBank
Match: EWM20181.1 (hypothetical protein Naga_101226g1 [Nannochloropsis gaditana])

HSP 1 Score: 68.6 bits (166), Expect = 3.400e-8
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  144 LVRSQKILGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVNYRAAKKVAWVVNGVGVNESLR-----------SNFNIFTDKNG 238
            + R+Q ILG+E + G GF + +N TR + Q+VN    G+E W+G GA+  I++ +  +R++NYR     AWVV G  +  S +              NIF +K G
Sbjct:  113 IARAQFILGSESYLGTGFFSSINQTRHSYQVVNGAWGGHEYWVGPGAAAFIKTYSFSKRVINYR-TNPYAWVVAGTMIAGSYKPTNTTPKVVTNRGDNIFVNKTG 216
[Close]
BLAST of NO10G03520 vs. NCBI_GenBank
Match: XP_005852474.1 (hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526] >EKU23358.1 hypothetical protein NGA_0689200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-8
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 
Query:  144 LVRSQKILGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTVRRLVNYRAAKKVAWVVNGVGVNESLR-----------SNFNIFTDKNG 238
            + R+Q ILG+E + G GF + +N TR + Q+VN    G+E W+G GA+  I++ +  +R++NYR     AWVV G  +  S +              NIF +K G
Sbjct:  322 IARAQFILGSESYLGTGFFSSINQTRHSYQVVNGAWGGHEYWVGPGAAAFIKTYSFGKRVINYR-TNPYAWVVAGTMIAGSYKPTNTTPKVVTNRGDNIFVNKTG 425
The following BLAST results are available for this feature:
BLAST of NO10G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005854415.11.100e-5446.74hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853421.18.200e-3139.83hypothetical protein NGA_0438900, partial [Nannoch... [more]
EWM25326.11.100e-3039.42hypothetical protein Naga_100880g2, partial [Nanno... [more]
EWM20181.13.400e-835.24hypothetical protein Naga_101226g1 [Nannochloropsi... [more]
XP_005852474.14.400e-835.24hypothetical protein NGA_0689200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03520.1NO10G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03520.1NO10G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03520 ID=NO10G03520|Name=NO10G03520|organism=Nannochloropsis oceanica|type=gene|length=1666bp
ATGACTGGCGTCTATCATTTGGCCTTCACACCTTTCGGAAGCGCAGTCAG
CGTTGGAAATGCTATCGCTGTCCTGGGCGGCGTCAGTGTTCGCATTGGCG
GCGGAACAGAGGGGTTGCGATTCTCAAGGGACAATTTGgtaggtcgtgcg
tgggtgaaggagacgagggatagaaggggaacagtagcaaaaaggcattc
aatagcatcatacaggtcatcattggcgaagtaggaaagccttggacgca
cgaaagccttggacgcacctaacactcatccccaaccaaaatacacacac
gaacataatcatactcgcgcacgacagGTGCCGGCCAGAATATATTCGTG
GGCGTGGGTGCTCGTGAATGTGGGCCATCAGCAGCAGACCGCCTTTGTGT
GCCTTGTGCGTGCGGGCTACGGCATGACTGCTATGGGTGCTGGGGTGTTT
GTACTTATTGCGGAGCTTGAGAACCGTGCGTGGGTGTGGCTTCCATCTTC
GGTGCCGGGCAGGTGTACTCCAACGGCGCGGGCGTTATGGACAAGACTGG
TGGAGAGTCGTCAACAGTGCTATTTCGGCCTTCCAAGCCCTGGCCGGCGG
GTCCGCgtacgtcagatttctctctctataccccgttccttctctcatgt
ttcattgcttacagaggagactagagtgtgttttgtcttgctgaaatata
tgcaataccttttggggttgtgtgacaggaagcggccaaggtacagcact
cactccatccatattttttcctccttctatttctcccacccatgatagct
atttgggcgcgggtgacatgaacattgtgggcgaacagtttgcgcgactt
gctttaaccctggaccagaatggcgttggcatgactttctttaacggggc
tgggcacggaactatgatctacgtccccagTTTGGTGATTGCCTCGTCCG
TTCTCAGAAGATTCTCGGTGCCGAGgtacgtctggctatgcgagatgcga
attccgtctgtccgtttcgcgtttttgatgatcgatgtgtctgtcggtcc
ctctcctctgattctaattttggtttttgtccttgtcctcgtatgtattg
tttcgcctctctgttttcctgtatcgattgtgtttgtgcccgcaacctac
ctgtctctgcactcatccacggactcttaactgagtgctctcgcggactg
aaccctggtagttgaaggcttgtctgtaatctgtcggcgttttttcctca
cacacacacactctccccatcgctttcttcgatgaatatgcccccccatg
aagtgtggtctcatatatctctttgatgtctcactccaacttgtttagGT
CTTCCAAGGAGCCGGGTTTCACACAGAAGTCAACAATACACGCTGGACAA
TTCAATTGGTGAATGCGCAAATGCCGGGTTATGAAGGCTGGATCGGGCTG
GGTGCCTCTCTGATGATCCGGTCGCGGACCACTGTCAGGCGTCTGGTGAA
CTACCGCGCTGCCAAGAAAGTGGCTTGGGTGGTGAATGGGGTCGGTGTCA
ACGAATCGCTGAGGAGCAACTTCAACATTTTTACCGACAAGAACGGCACG
ACAGTCCTGAAGCCGCACGCTAAAAATGGCAAGCACCGACTCCTGGAAGC
TGTGGATGAACTGTGA
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protein sequence of NO10G03520.1

>NO10G03520.1-protein ID=NO10G03520.1-protein|Name=NO10G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MTGVYHLAFTPFGSAVSVGNAIAVLGGVSVRIGGGTEGLRFSRDNLVPAR
IYSWAWVLVNVGHQQQTAFVCLVRAGYGMTAMGAGVFVLIAELENRAWVW
LPSSVPGRCTPTARALWTRLVESRQQCYFGLPSPGRRVRFGDCLVRSQKI
LGAEVFQGAGFHTEVNNTRWTIQLVNAQMPGYEGWIGLGASLMIRSRTTV
RRLVNYRAAKKVAWVVNGVGVNESLRSNFNIFTDKNGTTVLKPHAKNGKH
RLLEAVDEL*
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Synonyms
Publications