NO10G03510, NO10G03510 (gene) Nannochloropsis oceanica

Overview
NameNO10G03510
Unique NameNO10G03510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr10:1001635..1002915 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1001635..1002915 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.2 bits (430), Expect = 1.100e-38
Identity = 128/375 (34.13%), Postives = 175/375 (46.67%), Query Frame = 0 
Query:    1 MKAWQEAVDETNNNNALG-SNTNDRALAAGNDADEVDADGRWANRCTWRGDASQCVLCGSVPDDRVP--LEQGRRRRPSHLPYHGGMHSCRFSPRH-HGEAQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAGFR-----------EPLARHHGGVGARG--------------------------------------------------------------------GPVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSG 288
            M+AW+EA +ETN N  L     N RALA   D   VD +GRWA +    G  +QCV+CG  P          G      H+       + R S R     A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+  +  G+   F            + L +   GV + G                                                                     PVQHAV  Q YT+LLE FAMK +VVVELFQGT+  G
Sbjct:  738 MEAWKEATEETNRNPLLSLVQGNSRALAETADPTAVDENGRWAEQVYVGGKETQCVMCGVGPGPSSSHWSTGGNDTATCHVTEE---CTSRSSFRDILAAAKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCNADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPSHGSGCGKGLKFNVQMTAPDAASVKDLQKIFEGVASNGESLLDTINKYDERDVPFCDVKVSKPSTLFFPSIDTAQGIKFYQGLFTGNVLDKGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGDVVVELFQGTEKKG 1109
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.5 bits (389), Expect = 6.300e-34
Identity = 99/243 (40.74%), Postives = 138/243 (56.79%), Query Frame = 0 
Query:    1 MKAWQEAVDETNNNNALG-SNTNDRALAAGNDADEVDADGRWANRCTWRGDASQCVLCGSVPDDRVP--LEQGRRRRPSHLPYHGGMHSCRFSPRH-HGEAQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAG 235
            M+AW+EA +ETN N  L     N RALA   D   VD +GRWA +    G  +QCV+CG  P          G      H+       + R S R     A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+    HG   G
Sbjct:  736 MEAWKEATEETNRNPLLSLVQGNSRALAETADPTAVDENGRWAEQVYVGGKETQCVMCGVGPGPSSSHWSTGGNDTATCHVTEE---CTSRSSFRDILAAAKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCNADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPS----HGSGCG 971
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005853420.1 (hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526] >EKU22939.1 hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 141.7 bits (356), Expect = 4.200e-30
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0 
Query:  252 PVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIGETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD 351
            PVQHAV  Q YT+LLE FAMK  VVVELFQGT+  GV VA VPGG+  GE REV+WTAP P++G  GNRAY+RAYH GMP I+++S++FDLLP SVL++
Sbjct:   49 PVQHAVVGQPYTVLLENFAMKGNVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 147
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: EWM25329.1 (hypothetical protein Naga_101034g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 1.200e-29
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0 
Query:  252 PVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIGETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD 351
            PVQHAV  Q Y +LLE FAMK +VVVELFQGT+  GV VA VPGG+  GE REV+WTAP P++G  GNRAY+RAYH GMP I+++S++FDLLP SVL++
Sbjct:   19 PVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: EWM20010.1 (hypothetical protein Naga_102329g1 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 4.100e-25
Identity = 65/143 (45.45%), Postives = 95/143 (66.43%), Query Frame = 0 
Query:   97 AQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAG 235
            A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+    HG   G
Sbjct:   42 AKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCGADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPS----HGSGCG 180
The following BLAST results are available for this feature:
BLAST of NO10G03510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853421.11.100e-3834.13hypothetical protein NGA_0438900, partial [Nannoch... [more]
XP_005854415.16.300e-3440.74hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853420.14.200e-3066.67hypothetical protein NGA_0438800, partial [Nannoch... [more]
EWM25329.11.200e-2965.66hypothetical protein Naga_101034g2, partial [Nanno... [more]
EWM20010.14.100e-2545.45hypothetical protein Naga_102329g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03510.1NO10G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03510.1NO10G03510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03510 ID=NO10G03510|Name=NO10G03510|organism=Nannochloropsis oceanica|type=gene|length=1281bp
ATGAAAGCTTGGCAAGAGGCCGTGGACGAGACTAACAACAACAATGCTCT
CGGTAGCAACACCAACGATCGTGCCTTGGCTGCAGGAAACGATGCCGACG
AGGTGGACGCCGACGGCCGGTGGGCGAACAGGTGTACGTGGCGCGGTGAT
GCCTCGCAGTGTGTGCTGTGCGGGTCGGTCCCGGACGACCGAGTCCCACT
GGAACAGGGACGCAGGCGACGACCCAGCCACCTGCCATATCACGGAGGCA
TGCACTCCTGCAGATTCAGTCCAAGGCATCATGGGGAAGCTCAGAGGAGC
CTTGCCGGATGGGAAGACTTAGTATTGTCGCCCGCGGCGAAGGGCTGGGC
CAAGACGGTGGGCTCCAAGTACACGGCGCGTCTCTTGCAAGATATCGACG
ATCACCAGGCGGAGAATCCCGGGGCGGATATCAAGCTGCCGGACACGAAC
ATTTTGACCTACGACATTTTCCTGTACTGCCCCGTGGCCGATGCGGAGTG
TGAGTATAGCCAGGCAAACATGAAGGCGGCATTCCAAGACTATCTCGACG
ATGTGGCGCAGGAGGAGACTGCGTTCAAGATTTCGTCGGCGACTGCAGCG
GTGCATCCGGCTATCTCTAAAATTGTGAATGATGCTGACGGAGACTTTGT
GTCGGCCATTGGGGCGCCGGCGCTAGAGGgtgtgggaagggcctctcgtt
ttctcttttcgtgacggcgcccgacaaatcttcggtgacggatgtgaaga
ctatcctggaaaagcaggtaccgacagtgatacttctggccttcatcaac
gaccaagggagcaggaagcatccttctgcagcgtgagcgtgacgaagcgc
tcagcaatgtttttcccgtccgtggacacggcggcagggaagagcttcta
tcagaagCTTTACACGGGCAACGCGCTGGATTCCGGGAGCCTCTGGCCCG
ACATCACGGTGGTGTCGGCGCACGAGGTGGCCCCGTTCAGCACGCAGTGG
CGGATCAGTCCTACACACTTTTGTTGGAGGGCTTTGCCATGAAGGCGGAA
GTGGTGGTGGAGCTGTTCCAGGGCACGCAGAGCAGCGGGGTGGAGGTGGC
CAGGGTCCCTGGTGGCATGGGCATCGGCGAGACACGCGAGGTGGCTTGGA
CGGCTCCTGCGCCCATGAATGGGGACGGTGGGAATCGGGCTTACGTGCGC
GCCTACCACGTTGGGATGCCGGGCATCTTTGCACAGAGCGAGGTCTTTGA
TCTCTTGCCCTTGTCTGTGCTGGATGACTAA
back to top

protein sequence of NO10G03510.1

>NO10G03510.1-protein ID=NO10G03510.1-protein|Name=NO10G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKAWQEAVDETNNNNALGSNTNDRALAAGNDADEVDADGRWANRCTWRGD
ASQCVLCGSVPDDRVPLEQGRRRRPSHLPYHGGMHSCRFSPRHHGEAQRS
LAGWEDLVLSPAAKGWAKTVGSKYTARLLQDIDDHQAENPGADIKLPDTN
ILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAA
VHPAISKIVNDADGDFVSAIGAPALEALHGQRAGFREPLARHHGGVGARG
GPVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIG
ETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD
*
back to top
Synonyms
Publications