NO10G03500, NO10G03500 (gene) Nannochloropsis oceanica

Overview
NameNO10G03500
Unique NameNO10G03500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr10:998366..1000165 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:998366..1000165 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G03500 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.4 bits (760), Expect = 4.800e-77
Identity = 153/271 (56.46%), Postives = 197/271 (72.69%), Query Frame = 0
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 272
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268          
BLAST of NO10G03500 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 207.2 bits (526), Expect = 6.500e-50
Identity = 110/199 (55.28%), Postives = 143/199 (71.86%), Query Frame = 0
Query:    1 MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVE 200
            MRF  + L    V A    + S+K GGP+ RVKRM+   T  TAATA +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+HRALT EERRMTELV RVE
Sbjct:    1 MRFHVIALLIGAVTACHAAE-SEKKGGPMQRVKRMMA--TDATAATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVE 196          
BLAST of NO10G03500 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 4.400e-22
Identity = 69/222 (31.08%), Postives = 116/222 (52.25%), Query Frame = 0
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLVKKVLTDP 268
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A             HR L  E    + ++  L  +V  GD  A  E+ D V D LW G +D  ++  GK P  + +      +R     ++PA +D++T DDP + +++TDP
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFITQLMTDP 309          
BLAST of NO10G03500 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 2.100e-19
Identity = 66/215 (30.70%), Postives = 110/215 (51.16%), Query Frame = 0
Query:   57 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTE----ERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELK-GKVPDIVEQ------LRQITMDEDPAFFDLITGDDPLV 261
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A             HR L  E    + ++  L  +V  GD  A  E+ D V D LW G +D  ++  GK P  + +      +R     ++PA +D++T DDP +
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFA-------------HRGLREEHEGGDPKLKALFDKVAAGDDTAAKEVHDVVFDELWGGLVDKEQMGFGKEPGTMFEPEASKIMRDYVRTQEPALWDMMTMDDPFI 302          
BLAST of NO10G03500 vs. NCBI_GenBank
Match: XP_005854650.1 (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >EKU21707.1 hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 4.000e-7
Identity = 45/182 (24.73%), Postives = 82/182 (45.05%), Query Frame = 0
Query:   88 NEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSEL--KGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDP 268
            +E+K  +SDP     +   TP       ++ L   +KE  T  D +  +ET++  +   +  ++ + +P  +A  M   +N   P                     L+AR++ G+  A  ELQ  + D    G IDL+E+   G+ P I+++ R+    E+P  +D I  +DP+ +K +  P
Sbjct:    9 DELKATWSDPVVFRFLRDQTPFLKAFKPLRPL--FSKEALTPQDGVDAVETFKNAMLKVLATIEAVRDPEGMATLMFNYSNLQDP-----------------EWVSLIARLQAGEKEAQLELQQYILDRELGGLIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAP 171          
The following BLAST results are available for this feature:
BLAST of NO10G03500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005854419.14.800e-7756.46hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
EWM25317.16.500e-5055.28hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
EWM20189.14.400e-2231.08hypothetical protein Naga_101121g1 [Nannochloropsi... [more]
XP_005852429.12.100e-1930.70hypothetical protein NGA_0725900 [Nannochloropsis ... [more]
XP_005854650.14.000e-724.73hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03500.1NO10G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03500.1NO10G03500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03500 ID=NO10G03500|Name=NO10G03500|organism=Nannochloropsis oceanica|type=gene|length=1800bp
ATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGC
CATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGC
GCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTT
ATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAA
GAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACA
TGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACT
TACGCGATGTTGCAAGgtaagacagagggagagactgtgctcatggaaca
gacgaaaaggcaacgacctgtcgcgcgtcactcagcattttccccgtttc
cctgcgcccgcccgcccttcctccctcttccatcctcttcctgcagCCAC
ACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCA
AAGAGGACTTCACGAAAACAGATgtacgtattacaagagaaagcgaatct
aagaaaagtatgcattccttcccctccacagaccctcggcgtccttctct
tcaaaaagggagagaatcaagcagctcttgtatccttcccttggagaaga
tcaaatgctcgcttttcgtatgtgcttccttttttcctttgcctccatcc
ctgacatcacgtctttctcattccatcacatacgcacttcatcgaaatta
tagAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCAT
CAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGC
AGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACC
CACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCG
CGTCGAGgtatgtttctgtctttgtgtggcgatacgtcatcccttcattg
cgttccttatccctcggctgacatttctcatatgaatttaacgtgcaccc
cacccacagAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGT
GGCCGACAGCTTGTGGAATGGAGgtaagcacacgatacttttcgcaatat
gtgggtgtgtgaatggggcgtttatcctcacctacgtgacctctttcatt
ctgtatagctattcctgggggctttcgtatgcgatgaaatgagttgtggg
aaggctacatgcttgcggatgaatgtcctttgctattctttctctgaaat
gtctggtctcagtcaactttctacgtgatactccactccaacaaccactc
cccgcctcgtctagtttttccccccatcacaccttccttgcgatagccac
ggctttgttctaatcaatatcaagcgtcatttctgctgggtgactaaatt
tcgtcactctggatgacaaagtttctctctcaatgattcacccttttctt
ccccactctctaacccccgcccagCTATCGATCTCTCGGAGCTCAAGGGC
AAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGA
TCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAgt
acgttcaaagagagaaaagcagagaaggggaagggagaaaaaggcaagca
gcacaggcacttactttgtatttctacacaaccattacatagGGTGCTCA
CGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAA
back to top

protein sequence of NO10G03500.1

>NO10G03500.1-protein ID=NO10G03500.1-protein|Name=NO10G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM
KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN
GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF
DLITGDDPLVKKVLTDPSMLFGVGASMGDQ*
back to top
Synonyms
Publications