NO10G03460, NO10G03460 (gene) Nannochloropsis oceanica

Overview
NameNO10G03460
Unique NameNO10G03460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr10:980860..981813 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:980860..981813 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03460 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 141.4 bits (355), Expect = 1.900e-30
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0 
Query:    1 MQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKKVLTDPSMLF 110
            MQK +++M P T   DG+HRALT EERRMTELV RVE GD  A  +L D +ADSLW   IDLSE KGK P+ ++ LR+I M E+P  FDLITG+DPLV+KVL+DPSMLF
Sbjct:  160 MQKYSDAMSPVTQNPDGSHRALTEEERRMTELVRRVEEGDPEATGQLHDRIADSLWGNTIDLSEFKGKEPEALKVLREIVMKEEPKVFDLITGEDPLVRKVLSDPSMLF 268
The following BLAST results are available for this feature:
BLAST of NO10G03460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854419.11.900e-3063.30hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03460.1NO10G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03460.1NO10G03460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03460 ID=NO10G03460|Name=NO10G03460|organism=Nannochloropsis oceanica|type=gene|length=954bp
ATGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGG
CACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCG
CCCGCGTCGAGgtatgtttctgtctttggtgtggcgatacgtcatccctt
cattgcgttccttatccctcggctgacatttctcatatgaatttaacgtg
caccccacccacagAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGAC
AACGTGGCCGACAGCTTGTGGAATGGAGgtaagcacacgatacttttcgc
aatatgtggtgtgtgaatggggcgtttatcctcaactacgtgacctcttt
cattctgtatagctattcctgggggctttcgtatgcgatgaaatgagttg
tgggaaggctacatgcttgcggatgaatgtcctttgctattctttctctg
aaatgtctggtctcagtcaactttctacgtgatagtccactccaacaacc
actccccgcctcgtctagtttttccccccatcacaccttccttgcgatag
ccacggctttgttctaatcaatatcaagcgtcatttctgctgggtgacta
aatttcgtcactctggatgacaaagtttctctctcaatgattcacccttt
tcttccccactctctaacccccgcccagCTATCGATCTCTCGGAGCTCAA
GGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACG
AGGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAA
AAgtacgttcaaagagagaaaagcagagaaggggaagggagaaaaaggca
agcagcacaggcacttactttgtatttctacacaaccattacatagGGTG
CTCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCA
GTAA
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protein sequence of NO10G03460.1

>NO10G03460.1-protein ID=NO10G03460.1-protein|Name=NO10G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MQKVANSMQPSTLQADGTHRALTTEERRMTELVARVENGDSAAVDELQDN
VADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFFDLITGDDPLVKK
VLTDPSMLFGVGASMGDQ*
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Synonyms
Publications