NO10G03380, NO10G03380 (gene) Nannochloropsis oceanica

Overview
NameNO10G03380
Unique NameNO10G03380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr10:954315..955133 +

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Properties
Property NameValue
DescriptionPeptide methionine sulfoxide reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:954315..955133 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0033743peptide-methionine (R)-S-oxide reductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0030091protein repair
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR028427Met_Sox_Rdtase
IPR002579Met_Sox_Rdtase_MsrB
Homology
BLAST of NO10G03380 vs. NCBI_GenBank
Match: EWM25556.1 (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 292.0 bits (746), Expect = 2.000e-75
Identity = 141/219 (64.38%), Postives = 164/219 (74.89%), Query Frame = 0
Query:   55 NQPTRRGFLGKWLGGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKSGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKD-GGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGEVEGWVAKLPKSK 273
            N+PTRR  + KWLGG+G                                    P+S MG+DLTPLST +ALKAAD+LKL + ERRILFEAGTEMPG+G+TANG K S+K DG+WVSA+SGVPLFD++AKYNSGTGWPSF Q  DPAHVIER+DP+D  GKP+FL RVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNA A+RF+PR EV+GW+A LPK+K
Sbjct:   68 NEPTRRAVIAKWLGGVG----LSVAATAALGTLFFPRRPLETQAAEMSAPAATPRSSMGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGVKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAMRFVPREEVDGWMASLPKAK 282          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: XP_005855531.1 (methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526] >EKU20825.1 methionine sulfoxide reductase b, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.1 bits (627), Expect = 1.200e-61
Identity = 115/143 (80.42%), Postives = 130/143 (90.91%), Query Frame = 0
Query:  112 MGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKD-GGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGAL 254
            MG+DLTPLST +ALKAAD+LKL + ERRILFEAGTEMPG+G+TANG K S+K DG+WVSA+SGVPLFD++AKYNSGTGWPSF Q  DPAHVIER+DP+D  GKP+FL RVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNA A+
Sbjct:    1 MGLDLTPLSTNEALKAADKLKLSKQERRILFEAGTEMPGSGMTANGIKYSSKADGLWVSALSGVPLFDAKAKYNSGTGWPSFTQVVDPAHVIERVDPRDVDGKPQFLWRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAAAM 143          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: CBJ27561.1 (Methionine-R-sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 197.2 bits (500), Expect = 6.600e-47
Identity = 94/154 (61.04%), Postives = 111/154 (72.08%), Query Frame = 0
Query:  108 PKSGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGK-PRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            P S  G DL PL+  +     D  KL  +++ +L +AGTE P  G T NG+ G  K +G WVSAVSGVPLF S  KY+SGTGWPSF+   DP HVIER+DPKD    P+FLQRVEVLDRKSGTHLGHVF+DGP PTGKRYCMNA ++ FIP+ E
Sbjct:   86 PFSKSGYDLDPLTAEEVDARVD--KLTELQKVVLTQAGTERPFQGKTVNGYNGGIKAEGTWVSAVSGVPLFSSDTKYDSGTGWPSFYAPIDPEHVIERVDPKDAASMPKFLQRVEVLDRKSGTHLGHVFNDGPKPTGKRYCMNAASMAFIPKEE 237          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: CEM29185.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 172.9 bits (437), Expect = 1.300e-39
Identity = 84/153 (54.90%), Postives = 104/153 (67.97%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGEVE 263
            S  G D+TP++  +  KAA  L   + +  I  +AGTEM  TG T NG+K +TKE G+WV A+SG+PLF S  KY+SGTGW SF +  DP HVIER DPKD     F +R EVLD KSG HLGHVFDDGP P  KRYCMNA +++F+P   V+
Sbjct:   77 SKSGYDVTPMTDEEVQKAAQGLTSKQYD--INLKAGTEMAFTGETVNGYKWNTKEKGMWVGAISGLPLFSSDDKYDSGTGWLSFLKPVDPMHVIERKDPKDMAFGPFERRTEVLDAKSGAHLGHVFDDGPPPLKKRYCMNAASMKFVPAEPVK 227          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: XP_005652026.1 (methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169] >EIE27482.1 methionine-R-sulfoxide reductase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 171.4 bits (433), Expect = 3.900e-39
Identity = 84/151 (55.63%), Postives = 102/151 (67.55%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            S +G D+TPL  T      +  K+    R I  EAGTE   TG T NG+    K++GVWVSA+ G+PLF S  K++SGTGWPSF+   DP HVIE    KD   P F+ R EV+D +SG HLGHVF+DGP PTGKRYCMNAGAL+FIP+GE
Sbjct:   66 SKLGYDITPL--TQGKLKEEAAKVDANTRYIALEAGTERAFTGKTINGYSHDNKKEGVWVSAIGGLPLFSSDTKFDSGTGWPSFYAPIDPEHVIE---VKDSSIP-FMPRTEVIDARSGAHLGHVFNDGPRPTGKRYCMNAGALKFIPKGE 210          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: KXZ44249.1 (hypothetical protein GPECTOR_70g480 [Gonium pectorale])

HSP 1 Score: 169.1 bits (427), Expect = 1.900e-38
Identity = 85/151 (56.29%), Postives = 102/151 (67.55%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            S  G D+TPLS  +A +AA    L   ++ +  EAGTE   TG T NG+    K+ GV+VSAV G+PLF S  K+NSGTGWPSFF   DP H+IE  D        ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NA AL+FIP GE
Sbjct:   36 SRSGYDVTPLS--EAERAAAAQGLTSFQQHVTMEAGTERAFTGKTVNGYSHDNKQRGVYVSAVGGLPLFTSDTKFNSGTGWPSFFAPVDPDHIIEVTD----YSIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 180          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: OLQ14971.1 (Peptide methionine sulfoxide reductase MsrB [Symbiodinium microadriaticum])

HSP 1 Score: 166.4 bits (420), Expect = 1.200e-37
Identity = 82/157 (52.23%), Postives = 103/157 (65.61%), Query Frame = 0
Query:  108 PKSGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKD-GGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGEVEG 264
            P++    +++  + T+A K+     L + E+R+L EA TE   TG T NGF    KE+G +VS +SG PLF S+AKYNSGTGWPSF+       V+ER DP D    P+   R EVLDR SGTHLGHVFDDGP PTGKRYC+NA AL+F+P    EG
Sbjct:   54 PRARAVEEMSDAAVTEAAKS-----LSKFEQRVLLEAATEPAFTGKTTNGFAWDNKEEGTYVSPISGEPLFSSKAKYNSGTGWPSFWAPVSSDTVLERTDPGDMDNLPKMFWRTEVLDRASGTHLGHVFDDGPPPTGKRYCINAAALKFVPGTAPEG 205          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: XP_002957178.1 (hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis] >EFJ41676.1 hypothetical protein VOLCADRAFT_121603 [Volvox carteri f. nagariensis])

HSP 1 Score: 164.5 bits (415), Expect = 4.700e-37
Identity = 82/151 (54.30%), Postives = 101/151 (66.89%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            S  G D+TPLS  +   AA+ L     ++ +  E GTE   TG T NG+    K+ GV+VSA+ G+PLF S  K+NSGTGWPSFF   DP H+IE     D   P ++ R+EVLD +SG HLGHVFDDGPAPTGKRYC+NA AL+FIP GE
Sbjct:   78 SRSGYDVTPLSDEERRAAAEGLT--PFQKHVTLEHGTERAFTGSTVNGYSHDNKQRGVYVSALGGLPLFSSDTKFNSGTGWPSFFAPLDPDHIIE---VPDYSIP-YMPRIEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 222          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: PNW85637.1 (hypothetical protein CHLRE_03g195850v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 164.1 bits (414), Expect = 6.200e-37
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            S  G D+TPL+  +  +AA+ L     ++ +  E GTE   TG T NG+    K+ G +V A+ G+PLF S  K+NSGTGWPSFF   DPAH++E +D        ++ RVEVLD +SG HLGHVFDDGPAPTGKRYC+NA AL+FIP GE
Sbjct:   80 SRAGYDVTPLTAEERQRAAEGLT--DFQKYVTLEHGTERAFTGKTVNGYTHDNKQRGTYVCALGGLPLFSSDTKFNSGTGWPSFFAPIDPAHIVEVVDM----SIPYMPRVEVLDARSGAHLGHVFDDGPAPTGKRYCINAAALKFIPAGE 224          
BLAST of NO10G03380 vs. NCBI_GenBank
Match: PRW60826.1 (methionine sulfoxide reductase B [Chlorella sorokiniana])

HSP 1 Score: 162.5 bits (410), Expect = 1.800e-36
Identity = 82/151 (54.30%), Postives = 98/151 (64.90%), Query Frame = 0
Query:  110 SGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPGTGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPAHVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNAGALRFIPRGE 261
            S  G D+TPL+T + + AA  L     +R +  +AGTE   TG T +G     K  G +VSAV G+PLF S+ KY+SGTGWPSFF+  DP HVIE  D        F+ RVEVL  +SG HLGHVF DGP PTG+RYCMNA ALRFIP GE
Sbjct:   30 SASGYDITPLTTEERIAAAKPLT--DFQRNVTLQAGTERAFTGKTVDGSPHDNKRKGTYVSAVGGLPLFSSEHKYDSGTGWPSFFKPLDPEHVIEVADT----SIPFMPRVEVLCARSGAHLGHVFTDGPRPTGRRYCMNAAALRFIPEGE 174          
The following BLAST results are available for this feature:
BLAST of NO10G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25556.12.000e-7564.38peptide methionine sulfoxide reductase [Nannochlor... [more]
XP_005855531.11.200e-6180.42methionine sulfoxide reductase b, partial [Nannoch... [more]
CBJ27561.16.600e-4761.04Methionine-R-sulfoxide reductase [Ectocarpus silic... [more]
CEM29185.11.300e-3954.90unnamed protein product [Vitrella brassicaformis C... [more]
XP_005652026.13.900e-3955.63methionine-R-sulfoxide reductase [Coccomyxa subell... [more]
KXZ44249.11.900e-3856.29hypothetical protein GPECTOR_70g480 [Gonium pector... [more]
OLQ14971.11.200e-3752.23Peptide methionine sulfoxide reductase MsrB [Symbi... [more]
XP_002957178.14.700e-3754.30hypothetical protein VOLCADRAFT_121603 [Volvox car... [more]
PNW85637.16.200e-3752.32hypothetical protein CHLRE_03g195850v5 [Chlamydomo... [more]
PRW60826.11.800e-3654.30methionine sulfoxide reductase B [Chlorella soroki... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001213NSK001213Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03380.1NO10G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585628gene_3857Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101420g2gene4950Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03380.1NO10G03380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03380 ID=NO10G03380|Name=NO10G03380|organism=Nannochloropsis oceanica|type=gene|length=819bp
ATGCGCCTACTCTTCACCAACCCAGTCACCTTGCTTTCGCTCGGCCTTGT
CTTGACCACCACCAGCCTCAGCATGCGTCGTGCCACCGCATTCTCCTTTC
CGCACCGCGTTTCCCAAGCTACTTCCATGTCCTCCTCCTCCTCGCCGACT
CCTCCTCCTTCCAACCAACCCACTCGCCGCGGCTTCCTGGGAAAATGGCT
CGGAGGCATAGGGCTTGGTGTGGCAGCCAGCGCCGCGGTCGGCGCATTTG
TTTTTCCCAGTCGTCCGCATGATGCAACAGCGGCAGCAGCTGCAGCAGCA
GGAGGAAGCGCCACCGCTGTTCCGAAGAGCGGGATGGGTATTGATTTGAC
GCCTCTTTCGACCACCGACGCCTTGAAAGCTGCCGATGAGCTCAAGTTAG
GGAGGATGGAAAGGAGGATACTCTTCGAGGCGGGAACTGAAATGCCTGGT
ACCGGAGTGACGGCTAATGGCTTCAAGGGCAGCACCAAGGAGGATGGCGT
ATGGGTCAGCGCCGTGAGCGGCGTCCCTCTCTTTGATTCTCAGGCCAAGT
ACAACAGTGGGACAGGGTGGCCCTCCTTTTTCCAGGCTGCGGACCCAGCC
CATGTGATTGAGAGGCTGGATCCGAAAGATGGGGGAAAGCCCCGGTTTCT
GCAGCGGGTGGAGGTGTTGGACCGTAAAAGTGGCACGCACCTTGGGCATG
TCTTCGATGACGGGCCCGCTCCGACGGGGAAGCGGTATTGCATGAACGCG
GGGGCGTTGCGGTTCATCCCACGGGGGGAGGTGGAGGGGTGGGTAGCGAA
GTTGCCCAAAAGCAAGTAG
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protein sequence of NO10G03380.1

>NO10G03380.1-protein ID=NO10G03380.1-protein|Name=NO10G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MRLLFTNPVTLLSLGLVLTTTSLSMRRATAFSFPHRVSQATSMSSSSSPT
PPPSNQPTRRGFLGKWLGGIGLGVAASAAVGAFVFPSRPHDATAAAAAAA
GGSATAVPKSGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPG
TGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPA
HVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNA
GALRFIPRGEVEGWVAKLPKSK*
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Synonyms
Publications